Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:21:56 (6254): wrapper (7.7.26015): starting
17:21:56 (6254): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:21:56] Arguments: --nthreads 8
[2025-11-25 17:21:56] Threads: 8
[2025-11-25 17:21:56] Checking for CVMFS
[2025-11-25 17:21:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:21:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:21:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:22:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:22:00] 2.11.2.0 15981 189134 138640 153289 2 75 21115652 25165824 4632 130560 12 66885455 99.881 36485043 2387 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 17:22:00] CVMFS is ok
[2025-11-25 17:22:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:22:00] Checking for apptainer binary...
[2025-11-25 17:22:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:22:00] Running /usr/bin/apptainer --version
[2025-11-25 17:22:00] apptainer version 1.3.2-1.el7
[2025-11-25 17:22:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:22:08] cg-vwn479.simple-grid.lan
[2025-11-25 17:22:08] apptainer works
[2025-11-25 17:22:08] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:22:08] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:22:08] Starting ATLAS job with PandaID=6895341416
[2025-11-25 17:22:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:56:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:56:42] 2025-11-26 14:55:49,808 | INFO     | time since job start (80980s) is within the limit (172800.0s)
[2025-11-26 15:56:42] 2025-11-26 14:55:50,155 | INFO     | monitor loop #5474: job 0:6895341416 is in state 'finished'
[2025-11-26 15:56:42] 2025-11-26 14:55:50,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:56:42] 2025-11-26 14:55:51,056 | INFO     | PID=10131 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 15:56:42] 2025-11-26 14:55:51,056 | INFO     | .. there are 9 such processes running
[2025-11-26 15:56:42] 2025-11-26 14:55:52,058 | INFO     | time since job start (80983s) is within the limit (172800.0s)
[2025-11-26 15:56:42] 2025-11-26 14:55:52,665 | INFO     | monitor loop #5475: job 0:6895341416 is in state 'finished'
[2025-11-26 15:56:42] 2025-11-26 14:55:52,666 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:56:42] 2025-11-26 14:55:54,067 | INFO     | time since job start (80985s) is within the limit (172800.0s)
[2025-11-26 15:56:42] 2025-11-26 14:55:55,173 | INFO     | monitor loop #5476: job 0:6895341416 is in state 'finished'
[2025-11-26 15:56:42] 2025-11-26 14:55:55,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:56:42] 2025-11-26 14:55:56,074 | INFO     | time since job start (80987s) is within the limit (172800.0s)
[2025-11-26 15:56:42] 2025-11-26 14:55:57,679 | INFO     | monitor loop #5477: job 0:6895341416 is in state 'finished'
[2025-11-26 15:56:42] 2025-11-26 14:55:57,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 15:56:42] 2025-11-26 14:55:58,082 | INFO     | time since job start (80989s) is within the limit (172800.0s)
[2025-11-26 15:56:42] 2025-11-26 14:55:59,603 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 15:56:42] 2025-11-26 14:55:59,604 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-26 15:56:42] 2025-11-26 14:55:59,606 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6895341416/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:56:42] 2025-11-26 14:55:59,606 | INFO     | extracted standard info from prmon json
[2025-11-26 15:56:42] 2025-11-26 14:55:59,606 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:56:42] 2025-11-26 14:55:59,607 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:56:42] 2025-11-26 14:55:59,634 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:56:42] 2025-11-26 14:55:59,636 | INFO     | sum of square deviations: 709941831092.0912
[2025-11-26 15:56:42] 2025-11-26 14:55:59,715 | INFO     | sum of deviations: 3027025471164.4204
[2025-11-26 15:56:42] 2025-11-26 14:55:59,715 | INFO     | mean x: 1764128650.6388466
[2025-11-26 15:56:42] 2025-11-26 14:55:59,715 | INFO     | mean y: 2816118.9840667676
[2025-11-26 15:56:42] 2025-11-26 14:55:59,715 | INFO     | intersect: -7519014721.26968
[2025-11-26 15:56:42] 2025-11-26 14:55:59,717 | INFO     | chi2: 30.951095618381576
[2025-11-26 15:56:42] 2025-11-26 14:55:59,719 | INFO     | sum of square deviations: 701893105413.0779
[2025-11-26 15:56:42] 2025-11-26 14:55:59,807 | INFO     | sum of deviations: 3460185429894.881
[2025-11-26 15:56:42] 2025-11-26 14:55:59,807 | INFO     | mean x: 1764128498.1431835
[2025-11-26 15:56:42] 2025-11-26 14:55:59,808 | INFO     | mean y: 2824325.2718964205
[2025-11-26 15:56:42] 2025-11-26 14:55:59,808 | INFO     | intersect: -8693958245.551239
[2025-11-26 15:56:42] 2025-11-26 14:55:59,809 | INFO     | chi2: 27.679196049061204
[2025-11-26 15:56:42] 2025-11-26 14:55:59,810 | INFO     | current chi2=27.679196049061204 (change=10.571191435876733 %)
[2025-11-26 15:56:42] 2025-11-26 14:55:59,810 | INFO     | right removable region: 1312
[2025-11-26 15:56:42] 2025-11-26 14:55:59,811 | INFO     | sum of square deviations: 701892189803.0776
[2025-11-26 15:56:42] 2025-11-26 14:55:59,872 | INFO     | sum of deviations: 2475590503110.7363
[2025-11-26 15:56:42] 2025-11-26 14:55:59,873 | INFO     | mean x: 1764128803.1431835
[2025-11-26 15:56:42] 2025-11-26 14:55:59,873 | INFO     | mean y: 2826565.6130997716
[2025-11-26 15:56:42] 2025-11-26 14:55:59,873 | INFO     | intersect: -6219297821.539078
[2025-11-26 15:56:42] 2025-11-26 14:55:59,874 | INFO     | chi2: 26.10379396171191
[2025-11-26 15:56:42] 2025-11-26 14:55:59,875 | INFO     | current chi2=26.10379396171191 (change=15.66116339284253 %)
[2025-11-26 15:56:42] 2025-11-26 14:55:59,875 | INFO     | left removable region: 10
[2025-11-26 15:56:42] 2025-11-26 14:55:59,876 | INFO     | sum of square deviations: 684398719863.0842
[2025-11-26 15:56:42] 2025-11-26 14:55:59,930 | INFO     | sum of deviations: 2491557139762.902
[2025-11-26 15:56:42] 2025-11-26 14:55:59,930 | INFO     | mean x: 1764128772.6528418
[2025-11-26 15:56:42] 2025-11-26 14:55:59,930 | INFO     | mean y: 2846485.5130568356
[2025-11-26 15:56:42] 2025-11-26 14:55:59,931 | INFO     | intersect: -6419473591.069889
[2025-11-26 15:56:42] 2025-11-26 14:55:59,932 | INFO     | chi2: 17.973670847308693
[2025-11-26 15:56:42] 2025-11-26 14:55:59,932 | INFO     | current memory leak: 3.64 B/s (using 1302 data points, chi2=17.97)
[2025-11-26 15:56:42] 2025-11-26 14:55:59,934 | INFO     | could have reported an average CPU frequency of 2249 MHz (45 samples)
[2025-11-26 15:56:42] 2025-11-26 14:55:59,934 | INFO     | ..............................
[2025-11-26 15:56:42] 2025-11-26 14:55:59,934 | INFO     | . Timing measurements:
[2025-11-26 15:56:42] 2025-11-26 14:55:59,934 | INFO     | . get job = 0 s
[2025-11-26 15:56:42] 2025-11-26 14:55:59,934 | INFO     | . initial setup = 9 s
[2025-11-26 15:56:42] 2025-11-26 14:55:59,934 | INFO     | . payload setup = 160 s
[2025-11-26 15:56:42] 2025-11-26 14:55:59,934 | INFO     | . stage-in = 0 s
[2025-11-26 15:56:42] 2025-11-26 14:55:59,935 | INFO     | . payload execution = 80528 s
[2025-11-26 15:56:42] 2025-11-26 14:55:59,935 | INFO     | . stage-out = 4 s
[2025-11-26 15:56:42] 2025-11-26 14:55:59,935 | INFO     | . log creation = 1 s
[2025-11-26 15:56:42] 2025-11-26 14:55:59,935 | INFO     | ..............................
[2025-11-26 15:56:42] 2025-11-26 14:56:00,117 | INFO     | time since job start (80991s) is within the limit (172800.0s)
[2025-11-26 15:56:42] 2025-11-26 14:56:00,425 | INFO     | 
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | job summary report
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | --------------------------------------------------
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | PanDA job id: 6895341416
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | task id: 47556137
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | errors: (none)
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | pilot state: finished 
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | transexitcode: 0
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | exeerrorcode: 0
[2025-11-26 15:56:42] 2025-11-26 14:56:00,426 | INFO     | exeerrordiag: 
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | exitcode: 0
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | exitmsg: OK
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | cpuconsumptiontime: 299057 s
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | nevents: 1000
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | neventsw: 0
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | pid: 16686
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | pgrp: 16686
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | corecount: 8
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | event service: False
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 13: 2284321, 23: 2284377, 34: 2284405, 45: 2284561, 56: 2284589, 66: 2284617, 77: 2284645, 88: 2284701, 97: 2285271, 99
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | --------------------------------------------------
[2025-11-26 15:56:42] 2025-11-26 14:56:00,427 | INFO     | 
[2025-11-26 15:56:42] 2025-11-26 14:56:00,428 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-26 15:56:42] 2025-11-26 14:56:00,925 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,925 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,926 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,926 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,926 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,926 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:56:42] 2025-11-26 14:56:00,932 | INFO     | job 6895341416 has completed (purged errors)
[2025-11-26 15:56:42] 2025-11-26 14:56:00,933 | INFO     | overall cleanup function is called
[2025-11-26 15:56:42] 2025-11-26 14:56:01,947 | INFO     | --- collectZombieJob: --- 10, [16686]
[2025-11-26 15:56:42] 2025-11-26 14:56:01,948 | INFO     | zombie collector waiting for pid 16686
[2025-11-26 15:56:42] 2025-11-26 14:56:01,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:56:42] 2025-11-26 14:56:01,948 | INFO     | collected zombie processes
[2025-11-26 15:56:42] 2025-11-26 14:56:01,948 | INFO     | will attempt to kill all subprocesses of pid=16686
[2025-11-26 15:56:42] 2025-11-26 14:56:02,046 | INFO     | process IDs to be killed: [16686] (in reverse order)
[2025-11-26 15:56:42] 2025-11-26 14:56:02,974 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:56:42] 2025-11-26 14:56:02,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:56:42] 2025-11-26 14:56:02,977 | INFO     | did not find any defunct processes belonging to 16686
[2025-11-26 15:56:42] 2025-11-26 14:56:02,979 | INFO     | did not find any defunct processes belonging to 16686
[2025-11-26 15:56:42] 2025-11-26 14:56:03,051 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:56:42] 2025-11-26 14:56:03,051 | INFO     | ready for new job
[2025-11-26 15:56:42] 2025-11-26 14:56:03,051 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:56:42] 2025-11-26 14:56:03,056 | INFO     | ***************************************
[2025-11-26 15:56:42] 2025-11-26 14:56:03,056 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:56:42] 2025-11-26 14:56:03,056 | INFO     | ***************************************
[2025-11-26 15:56:42] 2025-11-26 14:56:03,056 | INFO     | 
[2025-11-26 15:56:42] 2025-11-26 14:56:03,056 | INFO     | pilot is running in a VM
[2025-11-26 15:56:42] 2025-11-26 14:56:03,056 | INFO     | architecture information:
[2025-11-26 15:56:42] 2025-11-26 14:56:03,071 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:56:42] 2025-11-26 14:56:03,318 | INFO     | cat /etc/os-release:
[2025-11-26 15:56:42] NAME="CentOS Linux"
[2025-11-26 15:56:42] VERSION="7 (Core)"
[2025-11-26 15:56:42] ID="centos"
[2025-11-26 15:56:42] ID_LIKE="rhel fedora"
[2025-11-26 15:56:42] VERSION_ID="7"
[2025-11-26 15:56:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:56:42] ANSI_COLOR="0;31"
[2025-11-26 15:56:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:56:42] HOME_URL="https://www.centos.org/"
[2025-11-26 15:56:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:56:42] 
[2025-11-26 15:56:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:56:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:56:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:56:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:56:42] 
[2025-11-26 15:56:42] 2025-11-26 14:56:03,318 | INFO     | ***************************************
[2025-11-26 15:56:42] 2025-11-26 14:56:03,822 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-26 15:56:42] 2025-11-26 14:56:03,999 | INFO     | sufficient remaining disk space (495602106368 B)
[2025-11-26 15:56:42] 2025-11-26 14:56:03,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:56:42] 2025-11-26 14:56:04,000 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:56:42] 2025-11-26 14:56:04,000 | INFO     | update_server=False
[2025-11-26 15:56:42] 2025-11-26 14:56:04,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:56:42] 2025-11-26 14:56:04,002 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:56:42] 2025-11-26 14:56:04,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:56:42] 2025-11-26 14:56:04,007 | INFO     | aborting loop
[2025-11-26 15:56:42] 2025-11-26 14:56:04,083 | INFO     | all payload control threads have been joined
[2025-11-26 15:56:42] 2025-11-26 14:56:04,931 | INFO     | all job control threads have been joined
[2025-11-26 15:56:42] 2025-11-26 14:56:05,006 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:05,013 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:05,087 | INFO     | all data control threads have been joined
[2025-11-26 15:56:42] 2025-11-26 14:56:05,091 | INFO     | [payload] control thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:05,116 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:05,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:56:42] 2025-11-26 14:56:05,269 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:05,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:05,938 | INFO     | [job] control thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:05,969 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:06,010 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:06,094 | INFO     | [data] control thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:06,100 | INFO     | [job] validate thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:06,138 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:06,197 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:56:42] 2025-11-26 14:56:06,353 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:06,489 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:06,494 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:10,207 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:56:42] 2025-11-26 14:56:30,681 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:56:42] 2025-11-26 14:56:32,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140694865278784)>', '<ExcThread(monitor, started 140694161172224)>']
[2025-11-26 15:56:42] 2025-11-26 14:56:33,284 | INFO     | PID=10131 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 15:56:42] 2025-11-26 14:56:33,284 | INFO     | .. there are 9 such processes running
[2025-11-26 15:56:42] 2025-11-26 14:56:33,284 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:56:42] 2025-11-26 14:56:33,284 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:56:42] 2025-11-26 14:56:33,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:56:42] 2025-11-26 14:56:33,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:56:42] 2025-11-26 14:56:33,285 | INFO     | [monitor] control thread has ended
[2025-11-26 15:56:42] 2025-11-26 14:56:37,739 | INFO     | all workflow threads have been joined
[2025-11-26 15:56:42] 2025-11-26 14:56:37,740 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:56:42] 2025-11-26 14:56:37,740 | INFO     | traces error code: 0
[2025-11-26 15:56:42] 2025-11-26 14:56:37,740 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:56:42] 2025-11-26 14:56:38,018 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:56:42] 2025-11-26 14:56:38,088 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:56:42] 2025-11-26 14:56:38,123 [wrapper] pilotpid: 10131
[2025-11-26 15:56:42] 2025-11-26 14:56:38,244 [wrapper] Pilot exit status: 0
[2025-11-26 15:56:42] 2025-11-26 14:56:38,709 [wrapper] pandaids: 6895341416
[2025-11-26 15:56:42] 2025-11-26 14:56:39,471 [wrapper] cleanup supervisor_pilot  7276 10132
[2025-11-26 15:56:42] 2025-11-26 14:56:39,568 [wrapper] Test setup, not cleaning
[2025-11-26 15:56:42] 2025-11-26 14:56:39,661 [wrapper] apfmon messages muted
[2025-11-26 15:56:42] 2025-11-26 14:56:39,744 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:56:42] 2025-11-26 14:56:39,827 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:56:42]  *** Error codes and diagnostics ***
[2025-11-26 15:56:42]     "exeErrorCode": 0,
[2025-11-26 15:56:42]     "exeErrorDiag": "",
[2025-11-26 15:56:42]     "pilotErrorCode": 0,
[2025-11-26 15:56:42]     "pilotErrorDiag": "",
[2025-11-26 15:56:42]  *** Listing of results directory ***
[2025-11-26 15:56:42] total 1319588
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:04 pilot3.tar.gz
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc      5112 Nov 22 16:09 queuedata.json
[2025-11-26 15:56:42] -rwx------. 1 boinc boinc     36292 Nov 22 16:09 runpilot2-wrapper.sh
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc       100 Nov 25 17:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:56:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 17:21 run_atlas
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc       105 Nov 25 17:21 job.xml
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc      6392 Nov 25 17:21 init_data.xml
[2025-11-26 15:56:42] -rw-r--r--. 2 boinc boinc 410547987 Nov 25 17:21 EVNT.47483658._000403.pool.root.1
[2025-11-26 15:56:42] -rw-r--r--. 2 boinc boinc     15847 Nov 25 17:21 start_atlas.sh
[2025-11-26 15:56:42] drwxrwx--x. 2 boinc boinc        68 Nov 25 17:21 shared
[2025-11-26 15:56:42] -rw-r--r--. 2 boinc boinc    590099 Nov 25 17:21 input.tar.gz
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc         0 Nov 25 17:21 boinc_lockfile
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc      2785 Nov 25 17:22 pandaJob.out
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc    991543 Nov 25 17:26 agis_schedconf.cvmfs.json
[2025-11-26 15:56:42] drwx------. 5 boinc boinc      4096 Nov 25 17:26 pilot3
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc       533 Nov 26 15:27 boinc_task_state.xml
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc 910302802 Nov 26 15:53 HITS.47556137._003986.pool.root.1
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc      1031 Nov 26 15:54 memory_monitor_summary.json
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc   1516240 Nov 26 15:54 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc   2421770 Nov 26 15:54 log.47556137._003986.job.log.tgz.1
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc        95 Nov 26 15:55 pilot_heartbeat.json
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc      8628 Nov 26 15:55 heartbeat.json
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc      8192 Nov 26 15:56 boinc_mmap_file
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc        29 Nov 26 15:56 wrapper_checkpoint.txt
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc      4885 Nov 26 15:56 pilotlog.txt
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc  10830678 Nov 26 15:56 log.47556137._003986.job.log.1
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc       353 Nov 26 15:56 output.list
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc       620 Nov 26 15:56 runtime_log
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc  13271040 Nov 26 15:56 result.tar.gz
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc       662 Nov 26 15:56 xUPLDm3P4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYDKKDm4UzxMn.diag
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc      8833 Nov 26 15:56 runtime_log.err
[2025-11-26 15:56:42] -rw-r--r--. 1 boinc boinc     21507 Nov 26 15:56 stderr.txt
[2025-11-26 15:56:42] HITS file was successfully produced:
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc 910302802 Nov 26 15:53 shared/HITS.pool.root.1
[2025-11-26 15:56:42]  *** Contents of shared directory: ***
[2025-11-26 15:56:42] total 1303452
[2025-11-26 15:56:42] -rw-r--r--. 2 boinc boinc 410547987 Nov 25 17:21 ATLAS.root_0
[2025-11-26 15:56:42] -rw-r--r--. 2 boinc boinc     15847 Nov 25 17:21 start_atlas.sh
[2025-11-26 15:56:42] -rw-r--r--. 2 boinc boinc    590099 Nov 25 17:21 input.tar.gz
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc 910302802 Nov 26 15:53 HITS.pool.root.1
[2025-11-26 15:56:42] -rw-------. 1 boinc boinc  13271040 Nov 26 15:56 result.tar.gz
15:56:43 (6254): run_atlas exited; CPU time 299545.926381
15:56:43 (6254): called boinc_finish(0)

</stderr_txt>
]]>

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