Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:28:06 (28274): wrapper (7.7.26015): starting
07:28:06 (28274): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 07:28:06] Arguments: --nthreads 12
[2025-11-23 07:28:06] Threads: 12
[2025-11-23 07:28:06] Checking for CVMFS
[2025-11-23 07:28:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 07:28:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 07:28:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 07:28:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 07:28:07] 2.11.2.0 6893 113275 91176 153209 3 81 16332925 20275201 1 130560 0 48489396 99.931 5865768 30920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 07:28:07] CVMFS is ok
[2025-11-23 07:28:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 07:28:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 07:28:07] Further information can be found at the LHC@home message board.
[2025-11-23 07:28:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 07:28:07] Checking for apptainer binary...
[2025-11-23 07:28:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 07:28:07] Running /usr/bin/apptainer --version
[2025-11-23 07:28:07] apptainer version 1.3.2-1.el7
[2025-11-23 07:28:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 07:28:08] c-205-3.aglt2.org
[2025-11-23 07:28:08] apptainer works
[2025-11-23 07:28:08] Set ATHENA_PROC_NUMBER=12
[2025-11-23 07:28:08] Set ATHENA_CORE_NUMBER=12
[2025-11-23 07:28:08] Starting ATLAS job with PandaID=6895342743
[2025-11-23 07:28:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:30:21 (16628): wrapper (7.7.26015): starting
14:30:21 (16628): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 14:30:21] Arguments: --nthreads 12
[2025-11-23 14:30:21] Threads: 12
[2025-11-23 14:30:21] This job has been restarted, cleaning up previous attempt
[2025-11-23 14:30:21] Checking for CVMFS
[2025-11-23 14:30:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 14:30:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 14:30:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 14:30:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 14:30:22] 2.11.2.0 6893 113697 92684 153219 1 49 16841234 20275200 1 130560 0 48653686 99.931 5878898 30947 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 14:30:22] CVMFS is ok
[2025-11-23 14:30:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 14:30:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 14:30:22] Further information can be found at the LHC@home message board.
[2025-11-23 14:30:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 14:30:22] Checking for apptainer binary...
[2025-11-23 14:30:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 14:30:22] Running /usr/bin/apptainer --version
[2025-11-23 14:30:22] apptainer version 1.3.2-1.el7
[2025-11-23 14:30:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 14:30:23] c-205-3.aglt2.org
[2025-11-23 14:30:23] apptainer works
[2025-11-23 14:30:23] Set ATHENA_PROC_NUMBER=12
[2025-11-23 14:30:23] Set ATHENA_CORE_NUMBER=12
[2025-11-23 14:30:23] Starting ATLAS job with PandaID=6895342743
[2025-11-23 14:30:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:39:26]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:39:26] 2025-11-24 02:39:02,391 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 21:39:26] 2025-11-24 02:39:02,398 | INFO     | fitting pss+swap vs Time
[2025-11-23 21:39:26] 2025-11-24 02:39:02,399 | INFO     | sum of square deviations: 23137680460.175697
[2025-11-23 21:39:26] 2025-11-24 02:39:02,402 | INFO     | sum of deviations: 237343375367.38724
[2025-11-23 21:39:26] 2025-11-24 02:39:02,402 | INFO     | mean x: 1763939079.1876485
[2025-11-23 21:39:26] 2025-11-24 02:39:02,403 | INFO     | mean y: 3432832.805225653
[2025-11-23 21:39:26] 2025-11-24 02:39:02,403 | INFO     | intersect: -18090829282.942673
[2025-11-23 21:39:26] 2025-11-24 02:39:02,403 | INFO     | chi2: 6.336125231300444
[2025-11-23 21:39:26] 2025-11-24 02:39:02,404 | INFO     | sum of square deviations: 22323066024.997536
[2025-11-23 21:39:26] 2025-11-24 02:39:02,407 | INFO     | sum of deviations: 386445625862.4112
[2025-11-23 21:39:26] 2025-11-24 02:39:02,408 | INFO     | mean x: 1763938926.6899037
[2025-11-23 21:39:26] 2025-11-24 02:39:02,408 | INFO     | mean y: 3460716.0264423075
[2025-11-23 21:39:26] 2025-11-24 02:39:02,408 | INFO     | intersect: -30532957612.191307
[2025-11-23 21:39:26] 2025-11-24 02:39:02,408 | INFO     | chi2: 3.691623241959577
[2025-11-23 21:39:26] 2025-11-24 02:39:02,408 | INFO     | current chi2=3.691623241959577 (change=41.736895859902404 %)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,409 | INFO     | sum of square deviations: 21527800789.81483
[2025-11-23 21:39:26] 2025-11-24 02:39:02,412 | INFO     | sum of deviations: 486147241460.426
[2025-11-23 21:39:26] 2025-11-24 02:39:02,413 | INFO     | mean x: 1763938774.192214
[2025-11-23 21:39:26] 2025-11-24 02:39:02,413 | INFO     | mean y: 3479825.0705596106
[2025-11-23 21:39:26] 2025-11-24 02:39:02,413 | INFO     | intersect: -39830313582.39836
[2025-11-23 21:39:26] 2025-11-24 02:39:02,413 | INFO     | chi2: 2.4701953155307472
[2025-11-23 21:39:26] 2025-11-24 02:39:02,413 | INFO     | current chi2=2.4701953155307472 (change=33.086472978766786 %)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,414 | INFO     | sum of square deviations: 20751652192.128063
[2025-11-23 21:39:26] 2025-11-24 02:39:02,417 | INFO     | sum of deviations: 506822608550.93634
[2025-11-23 21:39:26] 2025-11-24 02:39:02,417 | INFO     | mean x: 1763938621.6945813
[2025-11-23 21:39:26] 2025-11-24 02:39:02,417 | INFO     | mean y: 3483843.65270936
[2025-11-23 21:39:26] 2025-11-24 02:39:02,418 | INFO     | intersect: -43077614725.94083
[2025-11-23 21:39:26] 2025-11-24 02:39:02,418 | INFO     | chi2: 2.2426672023311647
[2025-11-23 21:39:26] 2025-11-24 02:39:02,418 | INFO     | current chi2=2.2426672023311647 (change=9.21093614618469 %)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,418 | INFO     | right removable region: 405
[2025-11-23 21:39:26] 2025-11-24 02:39:02,419 | INFO     | sum of square deviations: 22323043271.375
[2025-11-23 21:39:26] 2025-11-24 02:39:02,422 | INFO     | sum of deviations: 110364730476.12495
[2025-11-23 21:39:26] 2025-11-24 02:39:02,422 | INFO     | mean x: 1763939231.6875
[2025-11-23 21:39:26] 2025-11-24 02:39:02,423 | INFO     | mean y: 3456515.2548076925
[2025-11-23 21:39:26] 2025-11-24 02:39:02,423 | INFO     | intersect: -8717427797.642134
[2025-11-23 21:39:26] 2025-11-24 02:39:02,423 | INFO     | chi2: 4.230511693437483
[2025-11-23 21:39:26] 2025-11-24 02:39:02,423 | INFO     | current chi2=4.230511693437483 (change=33.23188006861409 %)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,424 | INFO     | sum of square deviations: 21527730151.19704
[2025-11-23 21:39:26] 2025-11-24 02:39:02,427 | INFO     | sum of deviations: 80073661272.09482
[2025-11-23 21:39:26] 2025-11-24 02:39:02,427 | INFO     | mean x: 1763939384.189781
[2025-11-23 21:39:26] 2025-11-24 02:39:02,428 | INFO     | mean y: 3462316.4987834548
[2025-11-23 21:39:26] 2025-11-24 02:39:02,428 | INFO     | intersect: -6557614200.259124
[2025-11-23 21:39:26] 2025-11-24 02:39:02,428 | INFO     | chi2: 4.170666119850626
[2025-11-23 21:39:26] 2025-11-24 02:39:02,428 | INFO     | current chi2=4.170666119850626 (change=1.41461785059457 %)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,428 | INFO     | left removable region: 20
[2025-11-23 21:39:26] 2025-11-24 02:39:02,429 | INFO     | sum of square deviations: 17695189453.600067
[2025-11-23 21:39:26] 2025-11-24 02:39:02,432 | INFO     | sum of deviations: 310869182631.59985
[2025-11-23 21:39:26] 2025-11-24 02:39:02,432 | INFO     | mean x: 1763939201.2
[2025-11-23 21:39:26] 2025-11-24 02:39:02,432 | INFO     | mean y: 3523070.031168831
[2025-11-23 21:39:26] 2025-11-24 02:39:02,432 | INFO     | intersect: -30985370217.987236
[2025-11-23 21:39:26] 2025-11-24 02:39:02,433 | INFO     | chi2: 0.035701774710088334
[2025-11-23 21:39:26] 2025-11-24 02:39:02,433 | INFO     | current memory leak: 17.57 B/s (using 385 data points, chi2=0.04)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,433 | INFO     | could have reported an average CPU frequency of 2362 MHz (18 samples)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,433 | INFO     | ..............................
[2025-11-23 21:39:26] 2025-11-24 02:39:02,434 | INFO     | . Timing measurements:
[2025-11-23 21:39:26] 2025-11-24 02:39:02,434 | INFO     | . get job = 0 s
[2025-11-23 21:39:26] 2025-11-24 02:39:02,434 | INFO     | . initial setup = 2 s
[2025-11-23 21:39:26] 2025-11-24 02:39:02,434 | INFO     | . payload setup = 7 s
[2025-11-23 21:39:26] 2025-11-24 02:39:02,434 | INFO     | . stage-in = 0 s
[2025-11-23 21:39:26] 2025-11-24 02:39:02,434 | INFO     | . payload execution = 25666 s
[2025-11-23 21:39:26] 2025-11-24 02:39:02,434 | INFO     | . stage-out = 3 s
[2025-11-23 21:39:26] 2025-11-24 02:39:02,434 | INFO     | . log creation = 0 s
[2025-11-23 21:39:26] 2025-11-24 02:39:02,434 | INFO     | ..............................
[2025-11-23 21:39:26] 2025-11-24 02:39:02,515 | INFO     | 
[2025-11-23 21:39:26] 2025-11-24 02:39:02,515 | INFO     | job summary report
[2025-11-23 21:39:26] 2025-11-24 02:39:02,515 | INFO     | --------------------------------------------------
[2025-11-23 21:39:26] 2025-11-24 02:39:02,515 | INFO     | PanDA job id: 6895342743
[2025-11-23 21:39:26] 2025-11-24 02:39:02,515 | INFO     | task id: 47556137
[2025-11-23 21:39:26] 2025-11-24 02:39:02,516 | INFO     | errors: (none)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,516 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 21:39:26] 2025-11-24 02:39:02,516 | INFO     | pilot state: finished 
[2025-11-23 21:39:26] 2025-11-24 02:39:02,516 | INFO     | transexitcode: 0
[2025-11-23 21:39:26] 2025-11-24 02:39:02,516 | INFO     | exeerrorcode: 0
[2025-11-23 21:39:26] 2025-11-24 02:39:02,516 | INFO     | exeerrordiag: 
[2025-11-23 21:39:26] 2025-11-24 02:39:02,517 | INFO     | exitcode: 0
[2025-11-23 21:39:26] 2025-11-24 02:39:02,517 | INFO     | exitmsg: OK
[2025-11-23 21:39:26] 2025-11-24 02:39:02,517 | INFO     | cpuconsumptiontime: 292227 s
[2025-11-23 21:39:26] 2025-11-24 02:39:02,517 | INFO     | nevents: 1000
[2025-11-23 21:39:26] 2025-11-24 02:39:02,517 | INFO     | neventsw: 0
[2025-11-23 21:39:26] 2025-11-24 02:39:02,517 | INFO     | pid: 26771
[2025-11-23 21:39:26] 2025-11-24 02:39:02,517 | INFO     | pgrp: 26771
[2025-11-23 21:39:26] 2025-11-24 02:39:02,518 | INFO     | corecount: 12
[2025-11-23 21:39:26] 2025-11-24 02:39:02,518 | INFO     | event service: False
[2025-11-23 21:39:26] 2025-11-24 02:39:02,518 | INFO     | sizes: {0: 2298584, 1: 2298783, 6: 2299045, 11: 2299073, 25678: 2336281, 25682: 2345459, 25688: 2345649}
[2025-11-23 21:39:26] 2025-11-24 02:39:02,518 | INFO     | --------------------------------------------------
[2025-11-23 21:39:26] 2025-11-24 02:39:02,518 | INFO     | 
[2025-11-23 21:39:26] 2025-11-24 02:39:02,518 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 21:39:26] 2025-11-24 02:39:02,544 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,545 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,545 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,545 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,545 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,545 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,546 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,546 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,546 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,546 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,546 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,546 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,547 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,547 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,547 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,547 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,547 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,547 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,548 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 21:39:26] 2025-11-24 02:39:02,548 | INFO     | job 6895342743 has completed (purged errors)
[2025-11-23 21:39:26] 2025-11-24 02:39:02,548 | INFO     | overall cleanup function is called
[2025-11-23 21:39:26] 2025-11-24 02:39:03,565 | INFO     | --- collectZombieJob: --- 10, [26771]
[2025-11-23 21:39:26] 2025-11-24 02:39:03,565 | INFO     | zombie collector waiting for pid 26771
[2025-11-23 21:39:26] 2025-11-24 02:39:03,566 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 21:39:26] 2025-11-24 02:39:03,567 | INFO     | collected zombie processes
[2025-11-23 21:39:26] 2025-11-24 02:39:03,567 | INFO     | will attempt to kill all subprocesses of pid=26771
[2025-11-23 21:39:26] 2025-11-24 02:39:03,660 | INFO     | process IDs to be killed: [26771] (in reverse order)
[2025-11-23 21:39:26] 2025-11-24 02:39:03,711 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 21:39:26] 2025-11-24 02:39:03,711 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 21:39:26] 2025-11-24 02:39:03,714 | INFO     | did not find any defunct processes belonging to 26771
[2025-11-23 21:39:26] 2025-11-24 02:39:03,716 | INFO     | did not find any defunct processes belonging to 26771
[2025-11-23 21:39:26] 2025-11-24 02:39:03,718 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 21:39:26] 2025-11-24 02:39:03,719 | INFO     | ready for new job
[2025-11-23 21:39:26] 2025-11-24 02:39:03,719 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 21:39:26] 2025-11-24 02:39:03,721 | INFO     | ***************************************
[2025-11-23 21:39:26] 2025-11-24 02:39:03,721 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 21:39:26] 2025-11-24 02:39:03,721 | INFO     | ***************************************
[2025-11-23 21:39:26] 2025-11-24 02:39:03,721 | INFO     | 
[2025-11-23 21:39:26] 2025-11-24 02:39:03,722 | INFO     | architecture information:
[2025-11-23 21:39:26] 2025-11-24 02:39:03,722 | INFO     | executing command: cat /etc/os-release
[2025-11-23 21:39:26] 2025-11-24 02:39:03,738 | INFO     | cat /etc/os-release:
[2025-11-23 21:39:26] NAME="CentOS Linux"
[2025-11-23 21:39:26] VERSION="7 (Core)"
[2025-11-23 21:39:26] ID="centos"
[2025-11-23 21:39:26] ID_LIKE="rhel fedora"
[2025-11-23 21:39:26] VERSION_ID="7"
[2025-11-23 21:39:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 21:39:26] ANSI_COLOR="0;31"
[2025-11-23 21:39:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 21:39:26] HOME_URL="https://www.centos.org/"
[2025-11-23 21:39:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 21:39:26] 
[2025-11-23 21:39:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 21:39:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 21:39:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 21:39:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 21:39:26] 
[2025-11-23 21:39:26] 2025-11-24 02:39:03,738 | INFO     | ***************************************
[2025-11-23 21:39:26] 2025-11-24 02:39:04,241 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 21:39:26] 2025-11-24 02:39:04,258 | INFO     | sufficient remaining disk space (27972861952 B)
[2025-11-23 21:39:26] 2025-11-24 02:39:04,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 21:39:26] 2025-11-24 02:39:04,259 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 21:39:26] 2025-11-24 02:39:04,259 | INFO     | update_server=False
[2025-11-23 21:39:26] 2025-11-24 02:39:04,259 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:39:26] 2025-11-24 02:39:04,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:39:26] 2025-11-24 02:39:04,260 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 21:39:26] 2025-11-24 02:39:04,260 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:39:26] 2025-11-24 02:39:04,260 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:39:26] 2025-11-24 02:39:04,260 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:39:26] 2025-11-24 02:39:04,457 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:39:26] 2025-11-24 02:39:04,553 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 21:39:26] 2025-11-24 02:39:04,553 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 21:39:26] 2025-11-24 02:39:04,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:39:26] 2025-11-24 02:39:04,554 | INFO     | will abort loop
[2025-11-23 21:39:26] 2025-11-24 02:39:05,197 | INFO     | all data control threads have been joined
[2025-11-23 21:39:26] 2025-11-24 02:39:05,265 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:05,265 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:05,559 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:05,688 | INFO     | all payload control threads have been joined
[2025-11-23 21:39:26] 2025-11-24 02:39:05,826 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:05,875 | INFO     | all job control threads have been joined
[2025-11-23 21:39:26] 2025-11-24 02:39:05,976 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,023 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,062 | INFO     | [job] validate thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,202 | INFO     | [data] control thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,462 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,570 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,653 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,693 | INFO     | [payload] control thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,706 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,721 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:06,880 | INFO     | [job] control thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:07,591 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:39:26] 2025-11-24 02:39:11,597 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:39:26] 2025-11-24 02:39:20,536 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:39:26] 2025-11-24 02:39:21,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139803557422912)>', '<ExcThread(monitor, started 139802443765504)>']
[2025-11-23 21:39:26] 2025-11-24 02:39:21,347 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:39:26] 2025-11-24 02:39:21,348 | INFO     | [monitor] control thread has ended
[2025-11-23 21:39:26] 2025-11-24 02:39:26,310 | INFO     | all workflow threads have been joined
[2025-11-23 21:39:26] 2025-11-24 02:39:26,311 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:39:26] 2025-11-24 02:39:26,311 | INFO     | traces error code: 0
[2025-11-23 21:39:26] 2025-11-24 02:39:26,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:39:26] 2025-11-24 02:39:26,404 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:39:26] 2025-11-24 02:39:26,408 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:39:26] 2025-11-24 02:39:26,412 [wrapper] pilotpid: 20333
[2025-11-23 21:39:26] 2025-11-24 02:39:26,416 [wrapper] Pilot exit status: 0
[2025-11-23 21:39:26] 2025-11-24 02:39:26,430 [wrapper] pandaids: 6895342743 6895342743
[2025-11-23 21:39:26] 2025-11-24 02:39:26,470 [wrapper] cleanup supervisor_pilot 24402 20334
[2025-11-23 21:39:26] 2025-11-24 02:39:26,474 [wrapper] Test setup, not cleaning
[2025-11-23 21:39:26] 2025-11-24 02:39:26,478 [wrapper] apfmon messages muted
[2025-11-23 21:39:26] 2025-11-24 02:39:26,483 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:39:26] 2025-11-24 02:39:26,486 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:39:26]  *** Error codes and diagnostics ***
[2025-11-23 21:39:26]     "exeErrorCode": 0,
[2025-11-23 21:39:26]     "exeErrorDiag": "",
[2025-11-23 21:39:26]     "pilotErrorCode": 0,
[2025-11-23 21:39:26]     "pilotErrorDiag": "",
[2025-11-23 21:39:26]  *** Listing of results directory ***
[2025-11-23 21:39:26] total 1704196
[2025-11-23 21:39:26] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 10:04 pilot3.tar.gz
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 10:17 queuedata.json
[2025-11-23 21:39:26] -rwx------ 1 boincer umatlas     36292 Nov 22 10:21 runpilot2-wrapper.sh
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas       100 Nov 23 07:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:39:26] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 07:28 run_atlas
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas       105 Nov 23 07:28 job.xml
[2025-11-23 21:39:26] -rw-r--r-- 3 boincer umatlas 408568344 Nov 23 07:28 EVNT.47483658._000408.pool.root.1
[2025-11-23 21:39:26] -rw-r--r-- 3 boincer umatlas 408568344 Nov 23 07:28 ATLAS.root_0
[2025-11-23 21:39:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 07:28 start_atlas.sh
[2025-11-23 21:39:26] drwxrwx--x 2 boincer umatlas      4096 Nov 23 07:28 shared
[2025-11-23 21:39:26] -rw-r--r-- 2 boincer umatlas    590100 Nov 23 07:28 input.tar.gz
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas         0 Nov 23 07:28 boinc_lockfile
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 14:30 pandaJob.out
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas        57 Nov 23 14:30 setup.sh.local
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas    989786 Nov 23 14:30 agis_schedconf.cvmfs.json
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas       533 Nov 23 21:25 boinc_task_state.xml
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 21:28 init_data.xml
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas 912476699 Nov 23 21:38 HITS.47556137._004039.pool.root.1
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas        96 Nov 23 21:38 pilot_heartbeat.json
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas      1062 Nov 23 21:38 memory_monitor_summary.json
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas   1526164 Nov 23 21:38 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas   2182989 Nov 23 21:38 log.47556137._004039.job.log.tgz.1
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas      8675 Nov 23 21:39 heartbeat.json
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 21:39 boinc_mmap_file
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas        29 Nov 23 21:39 wrapper_checkpoint.txt
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas      4738 Nov 23 21:39 pilotlog.txt
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas   3597884 Nov 23 21:39 log.47556137._004039.job.log.1
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas       353 Nov 23 21:39 output.list
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas       620 Nov 23 21:39 runtime_log
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas   5795840 Nov 23 21:39 result.tar.gz
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas      9425 Nov 23 21:39 runtime_log.err
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas       794 Nov 23 21:39 9YPODmyb4g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmp9HKDmvFnKgm.diag
[2025-11-23 21:39:26] -rw-r--r-- 1 boincer umatlas     23176 Nov 23 21:39 stderr.txt
[2025-11-23 21:39:26] HITS file was successfully produced:
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas 912476699 Nov 23 21:38 shared/HITS.pool.root.1
[2025-11-23 21:39:26]  *** Contents of shared directory: ***
[2025-11-23 21:39:26] total 1296348
[2025-11-23 21:39:26] -rw-r--r-- 3 boincer umatlas 408568344 Nov 23 07:28 ATLAS.root_0
[2025-11-23 21:39:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 07:28 start_atlas.sh
[2025-11-23 21:39:26] -rw-r--r-- 2 boincer umatlas    590100 Nov 23 07:28 input.tar.gz
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas 912476699 Nov 23 21:38 HITS.pool.root.1
[2025-11-23 21:39:26] -rw------- 1 boincer umatlas   5795840 Nov 23 21:39 result.tar.gz
21:39:28 (16628): run_atlas exited; CPU time 285834.901529
21:39:28 (16628): called boinc_finish(0)

</stderr_txt>
]]>

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