Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:10:43 (1730): wrapper (7.7.26015): starting
00:10:43 (1730): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:10:43] Arguments: --nthreads 8
[2025-11-26 00:10:43] Threads: 8
[2025-11-26 00:10:43] Checking for CVMFS
[2025-11-26 00:10:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:47] 2.11.2.0 32728 284399 143004 153301 3 62 23474211 25165824 4632 130560 10 139661961 99.886 78636824 2935 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 00:10:47] CVMFS is ok
[2025-11-26 00:10:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:47] Checking for apptainer binary...
[2025-11-26 00:10:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:47] Running /usr/bin/apptainer --version
[2025-11-26 00:10:47] apptainer version 1.3.2-1.el7
[2025-11-26 00:10:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:52] cg-vwn337.simple-grid.lan
[2025-11-26 00:10:52] apptainer works
[2025-11-26 00:10:52] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:10:52] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:10:52] Starting ATLAS job with PandaID=6894240184
[2025-11-26 00:10:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:34:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:34:31] 2025-11-26 23:33:25,128 | INFO     | time since job start (87517s) is within the limit (172800.0s)
[2025-11-27 00:34:31] 2025-11-26 23:33:27,133 | INFO     | monitor loop #5884: job 0:6894240184 is in state 'finished'
[2025-11-27 00:34:31] 2025-11-26 23:33:27,134 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:34:31] 2025-11-26 23:33:27,142 | INFO     | time since job start (87519s) is within the limit (172800.0s)
[2025-11-27 00:34:31] 2025-11-26 23:33:29,149 | INFO     | time since job start (87521s) is within the limit (172800.0s)
[2025-11-27 00:34:31] 2025-11-26 23:33:29,638 | INFO     | monitor loop #5885: job 0:6894240184 is in state 'finished'
[2025-11-27 00:34:31] 2025-11-26 23:33:29,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:34:31] 2025-11-26 23:33:31,156 | INFO     | time since job start (87523s) is within the limit (172800.0s)
[2025-11-27 00:34:31] 2025-11-26 23:33:32,146 | INFO     | monitor loop #5886: job 0:6894240184 is in state 'finished'
[2025-11-27 00:34:31] 2025-11-26 23:33:32,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:34:31] 2025-11-26 23:33:33,163 | INFO     | time since job start (87525s) is within the limit (172800.0s)
[2025-11-27 00:34:31] 2025-11-26 23:33:34,652 | INFO     | monitor loop #5887: job 0:6894240184 is in state 'finished'
[2025-11-27 00:34:31] 2025-11-26 23:33:34,653 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:34:31] 2025-11-26 23:33:35,169 | INFO     | time since job start (87527s) is within the limit (172800.0s)
[2025-11-27 00:34:31] 2025-11-26 23:33:36,789 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 00:34:31] 2025-11-26 23:33:36,790 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 00:34:31] 2025-11-26 23:33:36,792 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6894240184/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:34:31] 2025-11-26 23:33:36,792 | INFO     | extracted standard info from prmon json
[2025-11-27 00:34:31] 2025-11-26 23:33:36,792 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:34:31] 2025-11-26 23:33:36,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:34:31] 2025-11-26 23:33:36,818 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:34:31] 2025-11-26 23:33:36,820 | INFO     | sum of square deviations: 897267201091.0203
[2025-11-27 00:34:31] 2025-11-26 23:33:36,875 | INFO     | sum of deviations: 3487992308942.7266
[2025-11-27 00:34:31] 2025-11-26 23:33:36,875 | INFO     | mean x: 1764156441.0954385
[2025-11-27 00:34:31] 2025-11-26 23:33:36,876 | INFO     | mean y: 2846199.1270175437
[2025-11-27 00:34:31] 2025-11-26 23:33:36,876 | INFO     | intersect: -6855048629.560088
[2025-11-27 00:34:31] 2025-11-26 23:33:36,877 | INFO     | chi2: 20.65617038004027
[2025-11-27 00:34:31] 2025-11-26 23:33:36,880 | INFO     | sum of square deviations: 887855835604.999
[2025-11-27 00:34:31] 2025-11-26 23:33:36,995 | INFO     | sum of deviations: 3959955935090.3896
[2025-11-27 00:34:31] 2025-11-26 23:33:36,996 | INFO     | mean x: 1764156288.5992959
[2025-11-27 00:34:31] 2025-11-26 23:33:36,996 | INFO     | mean y: 2853845.7809859156
[2025-11-27 00:34:31] 2025-11-26 23:33:36,996 | INFO     | intersect: -7865519470.372821
[2025-11-27 00:34:31] 2025-11-26 23:33:36,998 | INFO     | chi2: 17.49280354015794
[2025-11-27 00:34:31] 2025-11-26 23:33:36,998 | INFO     | current chi2=17.49280354015794 (change=15.314391688689014 %)
[2025-11-27 00:34:31] 2025-11-26 23:33:36,998 | INFO     | right removable region: 1419
[2025-11-27 00:34:31] 2025-11-26 23:33:37,000 | INFO     | sum of square deviations: 887854883394.9989
[2025-11-27 00:34:31] 2025-11-26 23:33:37,060 | INFO     | sum of deviations: 2885271927444.2617
[2025-11-27 00:34:31] 2025-11-26 23:33:37,060 | INFO     | mean x: 1764156593.5992959
[2025-11-27 00:34:31] 2025-11-26 23:33:37,060 | INFO     | mean y: 2855964.2570422534
[2025-11-27 00:34:31] 2025-11-26 23:33:37,060 | INFO     | intersect: -5730143414.722795
[2025-11-27 00:34:31] 2025-11-26 23:33:37,062 | INFO     | chi2: 15.86436837218907
[2025-11-27 00:34:31] 2025-11-26 23:33:37,062 | INFO     | current chi2=15.86436837218907 (change=23.197920619794278 %)
[2025-11-27 00:34:31] 2025-11-26 23:33:37,062 | INFO     | left removable region: 10
[2025-11-27 00:34:31] 2025-11-26 23:33:37,064 | INFO     | sum of square deviations: 867381087747.6024
[2025-11-27 00:34:31] 2025-11-26 23:33:37,138 | INFO     | sum of deviations: 2930774662299.996
[2025-11-27 00:34:31] 2025-11-26 23:33:37,139 | INFO     | mean x: 1764156563.107878
[2025-11-27 00:34:31] 2025-11-26 23:33:37,139 | INFO     | mean y: 2874330.3158268277
[2025-11-27 00:34:31] 2025-11-26 23:33:37,139 | INFO     | intersect: -5957995036.703761
[2025-11-27 00:34:31] 2025-11-26 23:33:37,141 | INFO     | chi2: 8.108244599757953
[2025-11-27 00:34:31] 2025-11-26 23:33:37,142 | INFO     | current memory leak: 3.38 B/s (using 1409 data points, chi2=8.11)
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | ..............................
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | . Timing measurements:
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | . get job = 0 s
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | . initial setup = 14 s
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | . payload setup = 149 s
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | . stage-in = 0 s
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | . payload execution = 87067 s
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | . stage-out = 5 s
[2025-11-27 00:34:31] 2025-11-26 23:33:37,144 | INFO     | . log creation = 1 s
[2025-11-27 00:34:31] 2025-11-26 23:33:37,145 | INFO     | ..............................
[2025-11-27 00:34:31] 2025-11-26 23:33:37,207 | INFO     | time since job start (87529s) is within the limit (172800.0s)
[2025-11-27 00:34:31] 2025-11-26 23:33:37,213 | INFO     | 87542s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 00:34:31] 2025-11-26 23:33:37,263 | INFO     | 
[2025-11-27 00:34:31] 2025-11-26 23:33:37,264 | INFO     | job summary report
[2025-11-27 00:34:31] 2025-11-26 23:33:37,264 | INFO     | --------------------------------------------------
[2025-11-27 00:34:31] 2025-11-26 23:33:37,264 | INFO     | PanDA job id: 6894240184
[2025-11-27 00:34:31] 2025-11-26 23:33:37,264 | INFO     | task id: 47533967
[2025-11-27 00:34:31] 2025-11-26 23:33:37,264 | INFO     | errors: (none)
[2025-11-27 00:34:31] 2025-11-26 23:33:37,264 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:34:31] 2025-11-26 23:33:37,264 | INFO     | pilot state: finished 
[2025-11-27 00:34:31] 2025-11-26 23:33:37,264 | INFO     | transexitcode: 0
[2025-11-27 00:34:31] 2025-11-26 23:33:37,264 | INFO     | exeerrorcode: 0
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | exeerrordiag: 
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | exitcode: 0
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | exitmsg: OK
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | cpuconsumptiontime: 330130 s
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | nevents: 1000
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | neventsw: 0
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | pid: 12217
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | pgrp: 12217
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | corecount: 8
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | event service: False
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | sizes: {0: 2284141, 1: 2284340, 12: 2284340, 23: 2284368, 34: 2284396, 44: 2284424, 55: 2284580, 66: 2284608, 77: 2284636, 87: 2284692, 98: 2285290, 109: 2285290, 
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | --------------------------------------------------
[2025-11-27 00:34:31] 2025-11-26 23:33:37,265 | INFO     | 
[2025-11-27 00:34:31] 2025-11-26 23:33:37,266 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-27 00:34:31] 2025-11-26 23:33:37,716 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,716 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,716 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,716 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,718 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,718 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,718 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:34:31] 2025-11-26 23:33:37,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,718 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:34:31] 2025-11-26 23:33:37,718 | INFO     | job 6894240184 has completed (purged errors)
[2025-11-27 00:34:31] 2025-11-26 23:33:37,718 | INFO     | overall cleanup function is called
[2025-11-27 00:34:31] 2025-11-26 23:33:38,740 | INFO     | --- collectZombieJob: --- 10, [12217]
[2025-11-27 00:34:31] 2025-11-26 23:33:38,741 | INFO     | zombie collector waiting for pid 12217
[2025-11-27 00:34:31] 2025-11-26 23:33:38,741 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:34:31] 2025-11-26 23:33:38,741 | INFO     | collected zombie processes
[2025-11-27 00:34:31] 2025-11-26 23:33:38,741 | INFO     | will attempt to kill all subprocesses of pid=12217
[2025-11-27 00:34:31] 2025-11-26 23:33:38,865 | INFO     | process IDs to be killed: [12217] (in reverse order)
[2025-11-27 00:34:31] 2025-11-26 23:33:39,410 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:34:31] 2025-11-26 23:33:39,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:34:31] 2025-11-26 23:33:39,414 | INFO     | did not find any defunct processes belonging to 12217
[2025-11-27 00:34:31] 2025-11-26 23:33:39,416 | INFO     | did not find any defunct processes belonging to 12217
[2025-11-27 00:34:31] 2025-11-26 23:33:39,418 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:34:31] 2025-11-26 23:33:39,418 | INFO     | ready for new job
[2025-11-27 00:34:31] 2025-11-26 23:33:39,419 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:34:31] 2025-11-26 23:33:39,424 | INFO     | ***************************************
[2025-11-27 00:34:31] 2025-11-26 23:33:39,424 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:34:31] 2025-11-26 23:33:39,424 | INFO     | ***************************************
[2025-11-27 00:34:31] 2025-11-26 23:33:39,424 | INFO     | 
[2025-11-27 00:34:31] 2025-11-26 23:33:39,425 | INFO     | pilot is running in a VM
[2025-11-27 00:34:31] 2025-11-26 23:33:39,425 | INFO     | architecture information:
[2025-11-27 00:34:31] 2025-11-26 23:33:39,425 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:34:31] 2025-11-26 23:33:39,466 | INFO     | cat /etc/os-release:
[2025-11-27 00:34:31] NAME="CentOS Linux"
[2025-11-27 00:34:31] VERSION="7 (Core)"
[2025-11-27 00:34:31] ID="centos"
[2025-11-27 00:34:31] ID_LIKE="rhel fedora"
[2025-11-27 00:34:31] VERSION_ID="7"
[2025-11-27 00:34:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:34:31] ANSI_COLOR="0;31"
[2025-11-27 00:34:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:34:31] HOME_URL="https://www.centos.org/"
[2025-11-27 00:34:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:34:31] 
[2025-11-27 00:34:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:34:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:34:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:34:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:34:31] 
[2025-11-27 00:34:31] 2025-11-26 23:33:39,466 | INFO     | ***************************************
[2025-11-27 00:34:31] 2025-11-26 23:33:39,970 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-27 00:34:31] 2025-11-26 23:33:40,526 | INFO     | sufficient remaining disk space (495779315712 B)
[2025-11-27 00:34:31] 2025-11-26 23:33:40,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:34:31] 2025-11-26 23:33:40,527 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:34:31] 2025-11-26 23:33:40,527 | INFO     | update_server=False
[2025-11-27 00:34:31] 2025-11-26 23:33:40,527 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:34:31] 2025-11-26 23:33:40,674 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:34:31] 2025-11-26 23:33:40,674 | INFO     | aborting loop
[2025-11-27 00:34:31] 2025-11-26 23:33:40,786 | INFO     | all job control threads have been joined
[2025-11-27 00:34:31] 2025-11-26 23:33:40,928 | INFO     | all payload control threads have been joined
[2025-11-27 00:34:31] 2025-11-26 23:33:41,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:34:31] 2025-11-26 23:33:41,165 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:34:31] 2025-11-26 23:33:41,491 | INFO     | all data control threads have been joined
[2025-11-27 00:34:31] 2025-11-26 23:33:41,533 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:41,608 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:41,622 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:41,680 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:41,776 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:41,793 | INFO     | [job] control thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:41,918 | INFO     | [job] validate thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:41,924 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:41,931 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:41,935 | INFO     | [payload] control thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:42,279 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:34:31] 2025-11-26 23:33:42,498 | INFO     | [data] control thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:42,617 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:42,887 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:43,173 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:43,286 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:33:45,079 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:34:31] 2025-11-26 23:34:10,371 | INFO     | PID=5580 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 00:34:31] 2025-11-26 23:34:10,372 | INFO     | .. there are 9 such processes running
[2025-11-27 00:34:31] 2025-11-26 23:34:10,373 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:34:31] 2025-11-26 23:34:10,373 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:34:31] 2025-11-26 23:34:10,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:34:31] 2025-11-26 23:34:20,683 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:34:31] 2025-11-26 23:34:22,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328294807360)>', '<ExcThread(monitor, started 140327688058624)>']
[2025-11-27 00:34:31] 2025-11-26 23:34:22,445 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:34:31] 2025-11-26 23:34:22,446 | INFO     | [monitor] control thread has ended
[2025-11-27 00:34:31] 2025-11-26 23:34:27,220 | INFO     | all workflow threads have been joined
[2025-11-27 00:34:31] 2025-11-26 23:34:27,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:34:31] 2025-11-26 23:34:27,221 | INFO     | traces error code: 0
[2025-11-27 00:34:31] 2025-11-26 23:34:27,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:34:31] 2025-11-26 23:34:27,475 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:34:31] 2025-11-26 23:34:27,552 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:34:31] 2025-11-26 23:34:27,637 [wrapper] pilotpid: 5580
[2025-11-27 00:34:31] 2025-11-26 23:34:27,683 [wrapper] Pilot exit status: 0
[2025-11-27 00:34:31] 2025-11-26 23:34:28,016 [wrapper] pandaids: 6894240184
[2025-11-27 00:34:31] 2025-11-26 23:34:28,926 [wrapper] cleanup supervisor_pilot 29328 5581
[2025-11-27 00:34:31] 2025-11-26 23:34:28,982 [wrapper] Test setup, not cleaning
[2025-11-27 00:34:31] 2025-11-26 23:34:29,048 [wrapper] apfmon messages muted
[2025-11-27 00:34:31] 2025-11-26 23:34:29,087 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:34:31] 2025-11-26 23:34:29,141 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:34:31]  *** Error codes and diagnostics ***
[2025-11-27 00:34:31]     "exeErrorCode": 0,
[2025-11-27 00:34:31]     "exeErrorDiag": "",
[2025-11-27 00:34:31]     "pilotErrorCode": 0,
[2025-11-27 00:34:31]     "pilotErrorDiag": "",
[2025-11-27 00:34:31]  *** Listing of results directory ***
[2025-11-27 00:34:31] total 1334992
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc    576529 Nov 21 01:06 pilot3.tar.gz
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc      5112 Nov 21 01:46 queuedata.json
[2025-11-27 00:34:31] -rwx------. 1 boinc boinc     36292 Nov 21 01:46 runpilot2-wrapper.sh
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc       100 Nov 26 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:34:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 00:10 run_atlas
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc       105 Nov 26 00:10 job.xml
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc      6391 Nov 26 00:10 init_data.xml
[2025-11-27 00:34:31] -rw-r--r--. 2 boinc boinc 411127879 Nov 26 00:10 EVNT.47493127._002057.pool.root.1
[2025-11-27 00:34:31] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 00:34:31] drwxrwx--x. 2 boinc boinc        68 Nov 26 00:10 shared
[2025-11-27 00:34:31] -rw-r--r--. 2 boinc boinc    590100 Nov 26 00:10 input.tar.gz
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc         0 Nov 26 00:10 boinc_lockfile
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc      2784 Nov 26 00:10 pandaJob.out
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc    991877 Nov 26 00:14 agis_schedconf.cvmfs.json
[2025-11-27 00:34:31] drwx------. 5 boinc boinc      4096 Nov 26 00:14 pilot3
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc       533 Nov 27 00:10 boinc_task_state.xml
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc 923726142 Nov 27 00:30 HITS.47533967._000285.pool.root.1
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc      1031 Nov 27 00:31 memory_monitor_summary.json
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc   1516240 Nov 27 00:31 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc   2487385 Nov 27 00:31 log.47533967._000285.job.log.tgz.1
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc      7945 Nov 27 00:33 heartbeat.json
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc        29 Nov 27 00:34 wrapper_checkpoint.txt
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc        95 Nov 27 00:34 pilot_heartbeat.json
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc      8192 Nov 27 00:34 boinc_mmap_file
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc      4883 Nov 27 00:34 pilotlog.txt
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc  11649361 Nov 27 00:34 log.47533967._000285.job.log.1
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc       353 Nov 27 00:34 output.list
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc       620 Nov 27 00:34 runtime_log
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc  14151680 Nov 27 00:34 result.tar.gz
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc      8817 Nov 27 00:34 runtime_log.err
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc       662 Nov 27 00:34 E2uLDmQTUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9kIKDmcVJbpm.diag
[2025-11-27 00:34:31] -rw-r--r--. 1 boinc boinc     21438 Nov 27 00:34 stderr.txt
[2025-11-27 00:34:31] HITS file was successfully produced:
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc 923726142 Nov 27 00:30 shared/HITS.pool.root.1
[2025-11-27 00:34:31]  *** Contents of shared directory: ***
[2025-11-27 00:34:31] total 1317992
[2025-11-27 00:34:31] -rw-r--r--. 2 boinc boinc 411127879 Nov 26 00:10 ATLAS.root_0
[2025-11-27 00:34:31] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 00:34:31] -rw-r--r--. 2 boinc boinc    590100 Nov 26 00:10 input.tar.gz
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc 923726142 Nov 27 00:30 HITS.pool.root.1
[2025-11-27 00:34:31] -rw-------. 1 boinc boinc  14151680 Nov 27 00:34 result.tar.gz
00:34:33 (1730): run_atlas exited; CPU time 330746.669807
00:34:33 (1730): called boinc_finish(0)

</stderr_txt>
]]>

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