Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:23:47 (21440): wrapper (7.7.26015): starting
03:23:47 (21440): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 03:23:47] Arguments: --nthreads 8
[2025-11-26 03:23:47] Threads: 8
[2025-11-26 03:23:47] Checking for CVMFS
[2025-11-26 03:23:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:23:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:23:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:23:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:23:50] 2.11.2.0 3687 284800 137500 153305 1 75 14426132 25165824 1288 130560 10 145988207 99.883 77317555 2552 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 03:23:50] CVMFS is ok
[2025-11-26 03:23:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:23:50] Checking for apptainer binary...
[2025-11-26 03:23:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:23:50] Running /usr/bin/apptainer --version
[2025-11-26 03:23:50] apptainer version 1.3.2-1.el7
[2025-11-26 03:23:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:24:05] cg-vwn214.simple-grid.lan
[2025-11-26 03:24:05] apptainer works
[2025-11-26 03:24:06] Set ATHENA_PROC_NUMBER=8
[2025-11-26 03:24:06] Set ATHENA_CORE_NUMBER=8
[2025-11-26 03:24:06] Starting ATLAS job with PandaID=6895341398
[2025-11-26 03:24:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:28:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:28:05] 2025-11-27 02:27:17,782 | INFO     | time since job start (86348s) is within the limit (172800.0s)
[2025-11-27 03:28:05] 2025-11-27 02:27:19,114 | INFO     | monitor loop #5801: job 0:6895341398 is in state 'finished'
[2025-11-27 03:28:05] 2025-11-27 02:27:19,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:28:05] 2025-11-27 02:27:19,791 | INFO     | time since job start (86350s) is within the limit (172800.0s)
[2025-11-27 03:28:05] 2025-11-27 02:27:21,620 | INFO     | monitor loop #5802: job 0:6895341398 is in state 'finished'
[2025-11-27 03:28:05] 2025-11-27 02:27:21,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:28:05] 2025-11-27 02:27:21,798 | INFO     | time since job start (86352s) is within the limit (172800.0s)
[2025-11-27 03:28:05] 2025-11-27 02:27:23,805 | INFO     | time since job start (86354s) is within the limit (172800.0s)
[2025-11-27 03:28:05] 2025-11-27 02:27:24,125 | INFO     | monitor loop #5803: job 0:6895341398 is in state 'finished'
[2025-11-27 03:28:05] 2025-11-27 02:27:24,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:28:05] 2025-11-27 02:27:25,815 | INFO     | time since job start (86356s) is within the limit (172800.0s)
[2025-11-27 03:28:05] 2025-11-27 02:27:26,635 | INFO     | monitor loop #5804: job 0:6895341398 is in state 'finished'
[2025-11-27 03:28:05] 2025-11-27 02:27:26,636 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:28:05] 2025-11-27 02:27:27,826 | INFO     | time since job start (86358s) is within the limit (172800.0s)
[2025-11-27 03:28:05] 2025-11-27 02:27:28,364 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:28:05] 2025-11-27 02:27:28,365 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 03:28:05] 2025-11-27 02:27:28,366 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6895341398/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:28:05] 2025-11-27 02:27:28,367 | INFO     | extracted standard info from prmon json
[2025-11-27 03:28:05] 2025-11-27 02:27:28,367 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:28:05] 2025-11-27 02:27:28,367 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:28:05] 2025-11-27 02:27:28,393 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:28:05] 2025-11-27 02:27:28,396 | INFO     | sum of square deviations: 863693080566.2437
[2025-11-27 03:28:05] 2025-11-27 02:27:28,457 | INFO     | sum of deviations: 3096786898660.5767
[2025-11-27 03:28:05] 2025-11-27 02:27:28,457 | INFO     | mean x: 1764167458.0788913
[2025-11-27 03:28:05] 2025-11-27 02:27:28,457 | INFO     | mean y: 2840365.5984363896
[2025-11-27 03:28:05] 2025-11-27 02:27:28,457 | INFO     | intersect: -6322613425.973328
[2025-11-27 03:28:05] 2025-11-27 02:27:28,459 | INFO     | chi2: 23.629387246397474
[2025-11-27 03:28:05] 2025-11-27 02:27:28,461 | INFO     | sum of square deviations: 854518385472.9049
[2025-11-27 03:28:05] 2025-11-27 02:27:28,513 | INFO     | sum of deviations: 3561813277142.937
[2025-11-27 03:28:05] 2025-11-27 02:27:28,513 | INFO     | mean x: 1764167305.5827389
[2025-11-27 03:28:05] 2025-11-27 02:27:28,514 | INFO     | mean y: 2848094.1212553494
[2025-11-27 03:28:05] 2025-11-27 02:27:28,514 | INFO     | intersect: -7350574183.2105665
[2025-11-27 03:28:05] 2025-11-27 02:27:28,515 | INFO     | chi2: 20.378717715282697
[2025-11-27 03:28:05] 2025-11-27 02:27:28,515 | INFO     | current chi2=20.378717715282697 (change=13.756893046857883 %)
[2025-11-27 03:28:05] 2025-11-27 02:27:28,516 | INFO     | right removable region: 1401
[2025-11-27 03:28:05] 2025-11-27 02:27:28,518 | INFO     | sum of square deviations: 854517459492.9043
[2025-11-27 03:28:05] 2025-11-27 02:27:28,570 | INFO     | sum of deviations: 2512332671694.7676
[2025-11-27 03:28:05] 2025-11-27 02:27:28,570 | INFO     | mean x: 1764167610.5827389
[2025-11-27 03:28:05] 2025-11-27 02:27:28,570 | INFO     | mean y: 2850078.9243937233
[2025-11-27 03:28:05] 2025-11-27 02:27:28,570 | INFO     | intersect: -5183908690.221048
[2025-11-27 03:28:05] 2025-11-27 02:27:28,572 | INFO     | chi2: 19.05344406495851
[2025-11-27 03:28:05] 2025-11-27 02:27:28,572 | INFO     | current chi2=19.05344406495851 (change=19.365475429908205 %)
[2025-11-27 03:28:05] 2025-11-27 02:27:28,572 | INFO     | left removable region: 10
[2025-11-27 03:28:05] 2025-11-27 02:27:28,574 | INFO     | sum of square deviations: 834561417907.4048
[2025-11-27 03:28:05] 2025-11-27 02:27:28,625 | INFO     | sum of deviations: 2585824132818.694
[2025-11-27 03:28:05] 2025-11-27 02:27:28,625 | INFO     | mean x: 1764167580.0913012
[2025-11-27 03:28:05] 2025-11-27 02:27:28,626 | INFO     | mean y: 2867967.0654205605
[2025-11-27 03:28:05] 2025-11-27 02:27:28,626 | INFO     | intersect: -5463269102.120997
[2025-11-27 03:28:05] 2025-11-27 02:27:28,627 | INFO     | chi2: 11.801116693851794
[2025-11-27 03:28:05] 2025-11-27 02:27:28,628 | INFO     | current memory leak: 3.10 B/s (using 1391 data points, chi2=11.80)
[2025-11-27 03:28:05] 2025-11-27 02:27:28,629 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 03:28:05] 2025-11-27 02:27:28,629 | INFO     | ..............................
[2025-11-27 03:28:05] 2025-11-27 02:27:28,629 | INFO     | . Timing measurements:
[2025-11-27 03:28:05] 2025-11-27 02:27:28,629 | INFO     | . get job = 0 s
[2025-11-27 03:28:05] 2025-11-27 02:27:28,629 | INFO     | . initial setup = 12 s
[2025-11-27 03:28:05] 2025-11-27 02:27:28,629 | INFO     | . payload setup = 141 s
[2025-11-27 03:28:05] 2025-11-27 02:27:28,630 | INFO     | . stage-in = 0 s
[2025-11-27 03:28:05] 2025-11-27 02:27:28,630 | INFO     | . payload execution = 85934 s
[2025-11-27 03:28:05] 2025-11-27 02:27:28,630 | INFO     | . stage-out = 5 s
[2025-11-27 03:28:05] 2025-11-27 02:27:28,630 | INFO     | . log creation = 2 s
[2025-11-27 03:28:05] 2025-11-27 02:27:28,630 | INFO     | ..............................
[2025-11-27 03:28:05] 2025-11-27 02:27:28,773 | INFO     | 
[2025-11-27 03:28:05] 2025-11-27 02:27:28,773 | INFO     | job summary report
[2025-11-27 03:28:05] 2025-11-27 02:27:28,773 | INFO     | --------------------------------------------------
[2025-11-27 03:28:05] 2025-11-27 02:27:28,773 | INFO     | PanDA job id: 6895341398
[2025-11-27 03:28:05] 2025-11-27 02:27:28,773 | INFO     | task id: 47556137
[2025-11-27 03:28:05] 2025-11-27 02:27:28,773 | INFO     | errors: (none)
[2025-11-27 03:28:05] 2025-11-27 02:27:28,773 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:28:05] 2025-11-27 02:27:28,773 | INFO     | pilot state: finished 
[2025-11-27 03:28:05] 2025-11-27 02:27:28,773 | INFO     | transexitcode: 0
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | exeerrorcode: 0
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | exeerrordiag: 
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | exitcode: 0
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | exitmsg: OK
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | cpuconsumptiontime: 323696 s
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | nevents: 1000
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | neventsw: 0
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | pid: 31796
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | pgrp: 31796
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | corecount: 8
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | event service: False
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 12: 2284321, 23: 2284349, 34: 2284377, 45: 2284533, 55: 2284561, 66: 2284589, 77: 2284617, 85: 2284935, 87: 2285243, 86
[2025-11-27 03:28:05] 2025-11-27 02:27:28,774 | INFO     | --------------------------------------------------
[2025-11-27 03:28:05] 2025-11-27 02:27:28,775 | INFO     | 
[2025-11-27 03:28:05] 2025-11-27 02:27:28,775 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-27 03:28:05] 2025-11-27 02:27:29,004 | INFO     | PID=25224 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 03:28:05] 2025-11-27 02:27:29,004 | INFO     | .. there are 9 such processes running
[2025-11-27 03:28:05] 2025-11-27 02:27:29,222 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,222 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,222 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,223 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,224 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:28:05] 2025-11-27 02:27:29,224 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,224 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:28:05] 2025-11-27 02:27:29,224 | INFO     | job 6895341398 has completed (purged errors)
[2025-11-27 03:28:05] 2025-11-27 02:27:29,224 | INFO     | overall cleanup function is called
[2025-11-27 03:28:05] 2025-11-27 02:27:30,244 | INFO     | --- collectZombieJob: --- 10, [31796]
[2025-11-27 03:28:05] 2025-11-27 02:27:30,245 | INFO     | zombie collector waiting for pid 31796
[2025-11-27 03:28:05] 2025-11-27 02:27:30,245 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:28:05] 2025-11-27 02:27:30,245 | INFO     | collected zombie processes
[2025-11-27 03:28:05] 2025-11-27 02:27:30,245 | INFO     | will attempt to kill all subprocesses of pid=31796
[2025-11-27 03:28:05] 2025-11-27 02:27:30,379 | INFO     | process IDs to be killed: [31796] (in reverse order)
[2025-11-27 03:28:05] 2025-11-27 02:27:31,251 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:28:05] 2025-11-27 02:27:31,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:28:05] 2025-11-27 02:27:31,255 | INFO     | did not find any defunct processes belonging to 31796
[2025-11-27 03:28:05] 2025-11-27 02:27:31,257 | INFO     | did not find any defunct processes belonging to 31796
[2025-11-27 03:28:05] 2025-11-27 02:27:31,311 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:28:05] 2025-11-27 02:27:31,311 | INFO     | ready for new job
[2025-11-27 03:28:05] 2025-11-27 02:27:31,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:28:05] 2025-11-27 02:27:31,316 | INFO     | ***************************************
[2025-11-27 03:28:05] 2025-11-27 02:27:31,316 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:28:05] 2025-11-27 02:27:31,316 | INFO     | ***************************************
[2025-11-27 03:28:05] 2025-11-27 02:27:31,317 | INFO     | 
[2025-11-27 03:28:05] 2025-11-27 02:27:31,317 | INFO     | pilot is running in a VM
[2025-11-27 03:28:05] 2025-11-27 02:27:31,317 | INFO     | architecture information:
[2025-11-27 03:28:05] 2025-11-27 02:27:31,324 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:28:05] 2025-11-27 02:27:31,426 | INFO     | cat /etc/os-release:
[2025-11-27 03:28:05] NAME="CentOS Linux"
[2025-11-27 03:28:05] VERSION="7 (Core)"
[2025-11-27 03:28:05] ID="centos"
[2025-11-27 03:28:05] ID_LIKE="rhel fedora"
[2025-11-27 03:28:05] VERSION_ID="7"
[2025-11-27 03:28:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:28:05] ANSI_COLOR="0;31"
[2025-11-27 03:28:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:28:05] HOME_URL="https://www.centos.org/"
[2025-11-27 03:28:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:28:05] 
[2025-11-27 03:28:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:28:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:28:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:28:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:28:05] 
[2025-11-27 03:28:05] 2025-11-27 02:27:31,426 | INFO     | ***************************************
[2025-11-27 03:28:05] 2025-11-27 02:27:31,930 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-27 03:28:05] 2025-11-27 02:27:32,142 | INFO     | sufficient remaining disk space (495330525184 B)
[2025-11-27 03:28:05] 2025-11-27 02:27:32,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:28:05] 2025-11-27 02:27:32,143 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:28:05] 2025-11-27 02:27:32,143 | INFO     | update_server=False
[2025-11-27 03:28:05] 2025-11-27 02:27:32,143 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:28:05] 2025-11-27 02:27:32,485 | INFO     | all data control threads have been joined
[2025-11-27 03:28:05] 2025-11-27 02:27:32,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:28:05] 2025-11-27 02:27:32,686 | INFO     | aborting loop
[2025-11-27 03:28:05] 2025-11-27 02:27:32,760 | INFO     | all job control threads have been joined
[2025-11-27 03:28:05] 2025-11-27 02:27:33,149 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:33,244 | INFO     | all payload control threads have been joined
[2025-11-27 03:28:05] 2025-11-27 02:27:33,492 | INFO     | [data] control thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:33,562 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:33,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:28:05] 2025-11-27 02:27:33,572 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:33,628 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:28:05] 2025-11-27 02:27:33,635 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:33,692 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:33,722 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:33,767 | INFO     | [job] control thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:33,787 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:28:05] 2025-11-27 02:27:33,888 | INFO     | [job] validate thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:33,968 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:34,214 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:34,251 | INFO     | [payload] control thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:34,373 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:34,794 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:35,570 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:37,638 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:28:05] 2025-11-27 02:27:38,913 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:28:05] 2025-11-27 02:27:39,549 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139742476494656)>', '<ExcThread(monitor, started 139742029002496)>']
[2025-11-27 03:28:05] 2025-11-27 02:27:44,574 | INFO     | all workflow threads have been joined
[2025-11-27 03:28:05] 2025-11-27 02:27:44,574 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:28:05] 2025-11-27 02:27:44,574 | INFO     | traces error code: 0
[2025-11-27 03:28:05] 2025-11-27 02:27:44,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:28:05] 2025-11-27 02:28:01,181 | INFO     | PID=25224 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 03:28:05] 2025-11-27 02:28:01,181 | INFO     | .. there are 9 such processes running
[2025-11-27 03:28:05] 2025-11-27 02:28:01,181 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:28:05] 2025-11-27 02:28:01,182 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:28:05] 2025-11-27 02:28:01,182 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:28:05] 2025-11-27 02:28:01,182 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:28:05] 2025-11-27 02:28:01,182 | INFO     | [monitor] control thread has ended
[2025-11-27 03:28:05] 2025-11-27 02:28:01,365 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:28:05] 2025-11-27 02:28:01,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:28:05] 2025-11-27 02:28:01,546 [wrapper] pilotpid: 25224
[2025-11-27 03:28:05] 2025-11-27 02:28:01,625 [wrapper] Pilot exit status: 0
[2025-11-27 03:28:05] 2025-11-27 02:28:01,995 [wrapper] pandaids: 6895341398
[2025-11-27 03:28:05] 2025-11-27 02:28:02,451 [wrapper] cleanup supervisor_pilot  5288 25225
[2025-11-27 03:28:05] 2025-11-27 02:28:02,459 [wrapper] Test setup, not cleaning
[2025-11-27 03:28:05] 2025-11-27 02:28:02,557 [wrapper] apfmon messages muted
[2025-11-27 03:28:05] 2025-11-27 02:28:02,621 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:28:05] 2025-11-27 02:28:02,706 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:28:05]  *** Error codes and diagnostics ***
[2025-11-27 03:28:05]     "exeErrorCode": 0,
[2025-11-27 03:28:05]     "exeErrorDiag": "",
[2025-11-27 03:28:05]     "pilotErrorCode": 0,
[2025-11-27 03:28:05]     "pilotErrorDiag": "",
[2025-11-27 03:28:05]  *** Listing of results directory ***
[2025-11-27 03:28:05] total 1340360
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc      5112 Nov 22 16:04 queuedata.json
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:04 pilot3.tar.gz
[2025-11-27 03:28:05] -rwx------. 1 boinc boinc     36292 Nov 22 16:06 runpilot2-wrapper.sh
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc       100 Nov 26 03:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:28:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 03:23 run_atlas
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc       105 Nov 26 03:23 job.xml
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc      6392 Nov 26 03:23 init_data.xml
[2025-11-27 03:28:05] -rw-r--r--. 2 boinc boinc 410964283 Nov 26 03:23 EVNT.47483658._000401.pool.root.1
[2025-11-27 03:28:05] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:23 start_atlas.sh
[2025-11-27 03:28:05] drwxrwx--x. 2 boinc boinc        68 Nov 26 03:23 shared
[2025-11-27 03:28:05] -rw-r--r--. 2 boinc boinc    590101 Nov 26 03:23 input.tar.gz
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc         0 Nov 26 03:23 boinc_lockfile
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc      2785 Nov 26 03:24 pandaJob.out
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc    991877 Nov 26 03:27 agis_schedconf.cvmfs.json
[2025-11-27 03:28:05] drwx------. 5 boinc boinc      4096 Nov 26 03:28 pilot3
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc       533 Nov 27 02:58 boinc_task_state.xml
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc 929699068 Nov 27 03:24 HITS.47556137._003968.pool.root.1
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc      1029 Nov 27 03:25 memory_monitor_summary.json
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc   1516240 Nov 27 03:25 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc   2475894 Nov 27 03:25 log.47556137._003968.job.log.tgz.1
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc        95 Nov 27 03:27 pilot_heartbeat.json
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc      8626 Nov 27 03:27 heartbeat.json
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc      8192 Nov 27 03:27 boinc_mmap_file
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc        29 Nov 27 03:27 wrapper_checkpoint.txt
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc       820 Nov 27 03:28 pilotlog.txt
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc  11505291 Nov 27 03:28 log.47556137._003968.job.log.1
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc       353 Nov 27 03:28 output.list
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc       620 Nov 27 03:28 runtime_log
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc  13998080 Nov 27 03:28 result.tar.gz
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc       662 Nov 27 03:28 vbKKDmxM4g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm78HKDmmW3oBo.diag
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc      8833 Nov 27 03:28 runtime_log.err
[2025-11-27 03:28:05] -rw-r--r--. 1 boinc boinc     21513 Nov 27 03:28 stderr.txt
[2025-11-27 03:28:05] HITS file was successfully produced:
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc 929699068 Nov 27 03:24 shared/HITS.pool.root.1
[2025-11-27 03:28:05]  *** Contents of shared directory: ***
[2025-11-27 03:28:05] total 1323516
[2025-11-27 03:28:05] -rw-r--r--. 2 boinc boinc 410964283 Nov 26 03:23 ATLAS.root_0
[2025-11-27 03:28:05] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:23 start_atlas.sh
[2025-11-27 03:28:05] -rw-r--r--. 2 boinc boinc    590101 Nov 26 03:23 input.tar.gz
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc 929699068 Nov 27 03:24 HITS.pool.root.1
[2025-11-27 03:28:05] -rw-------. 1 boinc boinc  13998080 Nov 27 03:28 result.tar.gz
03:28:06 (21440): run_atlas exited; CPU time 324310.072053
03:28:06 (21440): called boinc_finish(0)

</stderr_txt>
]]>

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