Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 13:04:13 (2900): vboxwrapper version 26210
2025-11-23 13:04:13 (2900): BOINC client version: 8.2.4
2025-11-23 13:04:14 (2900): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-11-23 13:04:14 (2900): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 13:04:15 (2900): Create VM. (boinc_297cc9d7caa86f20, slot#27)
2025-11-23 13:04:15 (2900): Setting Memory Size for VM. (4400MB)
2025-11-23 13:04:15 (2900): Setting CPU Count for VM. (4)
2025-11-23 13:04:16 (2900): Setting Chipset Options for VM.
2025-11-23 13:04:16 (2900): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 13:04:16 (2900): Setting Boot Options for VM.
2025-11-23 13:04:17 (2900): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 13:04:17 (2900): Enabling VM Network Access.
2025-11-23 13:04:17 (2900): Disabling USB Support for VM.
2025-11-23 13:04:18 (2900): Disabling COM Port Support for VM.
2025-11-23 13:04:18 (2900): Disabling LPT Port Support for VM.
2025-11-23 13:04:18 (2900): Disabling Audio Support for VM.
2025-11-23 13:04:18 (2900): Disabling Clipboard Support for VM.
2025-11-23 13:04:19 (2900): Disabling Drag and Drop Support for VM.
2025-11-23 13:04:19 (2900): Adding storage controller(s) to VM.
2025-11-23 13:04:19 (2900): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 13:04:21 (2900): Adding VirtualBox Guest Additions to VM.
2025-11-23 13:04:22 (2900): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 13:04:22 (2900): forwarding host port 60291 to guest port 80
2025-11-23 13:04:22 (2900): Enabling remote desktop for VM.
2025-11-23 13:04:22 (2900): Required extension pack not installed, remote desktop not enabled.
2025-11-23 13:04:22 (2900): Enabling shared directory for VM.
2025-11-23 13:04:23 (2900): Starting VM using VBoxManage interface. (boinc_297cc9d7caa86f20, slot#27)
2025-11-23 13:04:28 (2900): Successfully started VM. (PID = '19940')
2025-11-23 13:04:28 (2900): Reporting VM Process ID to BOINC.
2025-11-23 13:04:28 (2900): Guest Log: BIOS: VirtualBox 7.1.8
2025-11-23 13:04:28 (2900): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 13:04:28 (2900): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 13:04:28 (2900): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 13:04:28 (2900): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 13:04:28 (2900): Detected: Web Application Enabled (http://localhost:60291)
2025-11-23 13:04:28 (2900): Preference change detected
2025-11-23 13:04:28 (2900): Setting CPU throttle for VM. (100%)
2025-11-23 13:04:28 (2900): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 13:04:30 (2900): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 13:04:30 (2900): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 13:04:33 (2900): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 13:04:33 (2900): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 13:04:33 (2900): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 13:05:12 (2900): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 13:05:12 (2900): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-23 13:05:16 (2900): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 13:05:16 (2900): Guest Log: 00:00:00.000080 main     Log opened 2025-11-23T13:05:14.681941000Z
2025-11-23 13:05:16 (2900): Guest Log: 00:00:00.000163 main     OS Product: Linux
2025-11-23 13:05:16 (2900): Guest Log: 00:00:00.000193 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 13:05:16 (2900): Guest Log: 00:00:00.000211 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 13:05:16 (2900): Guest Log: 00:00:00.000228 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 13:05:16 (2900): Guest Log: 00:00:00.000229 main     Process ID: 1315
2025-11-23 13:05:16 (2900): Guest Log: 00:00:00.000229 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 13:05:16 (2900): Guest Log: 00:00:00.000751 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 13:05:17 (2900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 13:05:17 (2900): Guest Log: [INFO] Mounting shared directory
2025-11-23 13:05:17 (2900): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 13:05:23 (2900): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 13:05:23 (2900): Guest Log: [INFO] Detected branch: prod
2025-11-23 13:05:24 (2900): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 13:05:24 (2900): Guest Log: Copying input files
2025-11-23 13:05:25 (2900): Guest Log: Copied input files into RunAtlas.
2025-11-23 13:05:25 (2900): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 13:05:25 (2900): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 13:05:25 (2900): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 13:05:25 (2900): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 13:05:26 (2900): Guest Log: 00:00:10.002054 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 574 157 948 000ns (GuestNow=1 763 924 688 841 413 000 ns GuestLast=1 763 903 114 683 465 000 ns fSetTimeLastLoop=true )
2025-11-23 13:06:30 (2900): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 13:06:30 (2900): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 13:06:30 (2900): Guest Log: 2.6.3.0 1595 1 32212 153218 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 13:06:30 (2900): Guest Log: copied the webapp to /var/www
2025-11-23 13:06:30 (2900): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-23 13:06:30 (2900): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-23 13:06:31 (2900): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 13:06:31 (2900): Guest Log:  *** Starting ATLAS job. (PandaID=6895334135 taskID=47556137) ***
2025-11-23 14:44:31 (2900): Status Report: Elapsed Time: '6000.000000'
2025-11-23 14:44:31 (2900): Status Report: CPU Time: '21578.390625'
2025-11-23 16:24:34 (2900): Status Report: Elapsed Time: '12000.000000'
2025-11-23 16:24:34 (2900): Status Report: CPU Time: '45462.265625'
2025-11-23 18:04:37 (2900): Status Report: Elapsed Time: '18000.000000'
2025-11-23 18:04:37 (2900): Status Report: CPU Time: '69347.671875'
2025-11-23 19:44:40 (2900): Status Report: Elapsed Time: '24000.000000'
2025-11-23 19:44:40 (2900): Status Report: CPU Time: '93238.578125'
2025-11-23 21:24:44 (2900): Status Report: Elapsed Time: '30000.000000'
2025-11-23 21:24:44 (2900): Status Report: CPU Time: '117134.531250'
2025-11-23 23:04:47 (2900): Status Report: Elapsed Time: '36000.168371'
2025-11-23 23:04:47 (2900): Status Report: CPU Time: '141030.859375'
2025-11-24 00:44:49 (2900): Status Report: Elapsed Time: '42000.168371'
2025-11-24 00:44:49 (2900): Status Report: CPU Time: '164886.968750'
2025-11-24 02:24:52 (2900): Status Report: Elapsed Time: '48000.168371'
2025-11-24 02:24:52 (2900): Status Report: CPU Time: '188779.937500'
2025-11-24 04:04:55 (2900): Status Report: Elapsed Time: '54000.168371'
2025-11-24 04:04:55 (2900): Status Report: CPU Time: '212670.781250'
2025-11-24 05:44:58 (2900): Status Report: Elapsed Time: '60000.168371'
2025-11-24 05:44:58 (2900): Status Report: CPU Time: '236561.578125'
2025-11-24 06:36:49 (2900): Guest Log:  *** Job finished ***
2025-11-24 06:36:50 (2900): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:05,569 | INFO     | [job] control thread has finished
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:06,299 | INFO     | [monitor] cgroup control has ended
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:09,546 | INFO     | [data] queue_monitor thread has finished
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:11,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139739964221248)>', '<ExcThread(monitor, started 139739294324480)>']
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:11,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:11,846 | INFO     | [monitor] control thread has ended
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,106 | INFO     | all workflow threads have been joined
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,106 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,107 | INFO     | traces error code: 0
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,200 [wrapper] ==== pilot stdout END ====
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,204 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,207 [wrapper] pilotpid: 6011
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,210 [wrapper] Pilot exit status: 0
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,223 [wrapper] pandaids: 6895334135
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,249 [wrapper] cleanup supervisor_pilot 27973 6012
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,253 [wrapper] Test setup, not cleaning
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,256 [wrapper] apfmon messages muted
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,260 [wrapper] ==== wrapper stdout END ====
2025-11-24 06:36:50 (2900): Guest Log: 2025-11-24 12:36:16,264 [wrapper] ==== wrapper stderr END ====
2025-11-24 06:36:50 (2900): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 06:36:50 (2900): Guest Log:     "exeErrorCode": 0,
2025-11-24 06:36:50 (2900): Guest Log:     "exeErrorDiag": "",
2025-11-24 06:36:50 (2900): Guest Log:     "pilotErrorCode": 0,
2025-11-24 06:36:50 (2900): Guest Log:     "pilotErrorDiag": "",
2025-11-24 06:36:50 (2900): Guest Log:  *** Listing of results directory ***
2025-11-24 06:36:50 (2900): Guest Log: total 911436
2025-11-24 06:36:50 (2900): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 02:56 runpilot2-wrapper.sh
2025-11-24 06:36:50 (2900): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 02:56 queuedata.json
2025-11-24 06:36:50 (2900): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 02:56 pilot3.tar.gz
2025-11-24 06:36:50 (2900): Guest Log: -rwxr-xr-x. 1 atlas atlas      8721 Nov 23 19:04 init_data.xml
2025-11-24 06:36:50 (2900): Guest Log: -rwxr-xr-x. 1 atlas atlas    590093 Nov 23 19:04 input.tar.gz
2025-11-24 06:36:50 (2900): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 23 19:04 start_atlas.sh
2025-11-24 06:36:50 (2900): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 19:04 EVNT.47483658._000227.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 06:36:50 (2900): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 23 19:05 pandaJob.out
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas    989786 Nov 23 19:06 agis_schedconf.cvmfs.json
2025-11-24 06:36:50 (2900): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 19:06 pilot3
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas 909356730 Nov 24 12:35 HITS.47556137._002235.pool.root.1
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas        95 Nov 24 12:35 pilot_heartbeat.json
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 24 12:35 memory_monitor_summary.json
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 24 12:35 agis_ddmendpoints.agis.ALL.json
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas   1721219 Nov 24 12:35 log.47556137._002235.job.log.tgz.1
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas      8597 Nov 24 12:36 heartbeat.json
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 24 12:36 pilotlog.txt
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas   8332298 Nov 24 12:36 log.47556137._002235.job.log.1
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 12:36 output.list
2025-11-24 06:36:50 (2900): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 12:36 runtime_log
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas  10076160 Nov 24 12:36 result.tar.gz
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas       664 Nov 24 12:36 ZyBMDm0ysg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmItJKDmOL8zZn.diag
2025-11-24 06:36:50 (2900): Guest Log: -rw-r--r--. 1 atlas atlas      8746 Nov 24 12:36 runtime_log.err
2025-11-24 06:36:50 (2900): Guest Log: Looking for outputfile HITS.47556137._002235.pool.root.1
2025-11-24 06:36:50 (2900): Guest Log: HITS file was successfully produced
2025-11-24 06:36:50 (2900): Guest Log: -rw-------. 1 atlas atlas 909356730 Nov 24 12:35 /home/atlas/RunAtlas/HITS.47556137._002235.pool.root.1
2025-11-24 06:36:53 (2900): Guest Log: Successfully finished the ATLAS job!
2025-11-24 06:36:53 (2900): Guest Log: Copying the results back to the shared directory!
2025-11-24 06:36:53 (2900): Guest Log:  *** Contents of shared directory: ***
2025-11-24 06:36:53 (2900): Guest Log: total 1298812
2025-11-24 06:36:53 (2900): Guest Log: -rwxrwxrwx. 1 root root 409925726 Nov 23 19:04 ATLAS.root_0
2025-11-24 06:36:53 (2900): Guest Log: -rwxrwxrwx. 1 root root 909356730 Nov 24  2025 HITS.pool.root.1
2025-11-24 06:36:53 (2900): Guest Log: -rwxrwxrwx. 1 root root      8721 Nov 23 19:04 init_data.xml
2025-11-24 06:36:53 (2900): Guest Log: -rwxrwxrwx. 1 root root    590093 Nov 23 12:58 input.tar.gz
2025-11-24 06:36:53 (2900): Guest Log: -rwxrwxrwx. 1 root root  10076160 Nov 24  2025 result.tar.gz
2025-11-24 06:36:53 (2900): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 23 12:58 start_atlas.sh
2025-11-24 06:36:53 (2900): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 06:36:53 (2900): VM Completion File Detected.
2025-11-24 06:36:53 (2900): Powering off VM.
2025-11-24 06:36:54 (2900): Successfully stopped VM.
2025-11-24 06:36:54 (2900): Deregistering VM. (boinc_297cc9d7caa86f20, slot#27)
2025-11-24 06:36:54 (2900): Removing network bandwidth throttle group from VM.
2025-11-24 06:36:54 (2900): Removing VM from VirtualBox.
2025-11-24 06:36:59 (2900): called boinc_finish(0)

</stderr_txt>
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