Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:32:39 (12607): wrapper (7.7.26015): starting
06:32:39 (12607): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:32:39] Arguments: --nthreads 8
[2025-11-26 06:32:39] Threads: 8
[2025-11-26 06:32:39] Checking for CVMFS
[2025-11-26 06:32:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:32:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:32:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:32:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:32:41] 2.11.2.0 30456 284789 142960 153311 0 84 19626086 25165825 4632 130560 11 120664506 99.865 81376714 2746 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 06:32:41] CVMFS is ok
[2025-11-26 06:32:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:32:41] Checking for apptainer binary...
[2025-11-26 06:32:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:32:41] Running /usr/bin/apptainer --version
[2025-11-26 06:32:41] apptainer version 1.3.2-1.el7
[2025-11-26 06:32:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:32:51] cg-vwn385.simple-grid.lan
[2025-11-26 06:32:51] apptainer works
[2025-11-26 06:32:51] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:32:51] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:32:51] Starting ATLAS job with PandaID=6895334172
[2025-11-26 06:32:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:26:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:26:59] 2025-11-27 04:25:41,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:26:59] 2025-11-27 04:25:41,974 | INFO     | time since job start (82154s) is within the limit (172800.0s)
[2025-11-27 05:26:59] 2025-11-27 04:25:43,984 | INFO     | time since job start (82156s) is within the limit (172800.0s)
[2025-11-27 05:26:59] 2025-11-27 04:25:44,103 | INFO     | monitor loop #5562: job 0:6895334172 is in state 'finished'
[2025-11-27 05:26:59] 2025-11-27 04:25:44,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:26:59] 2025-11-27 04:25:45,995 | INFO     | time since job start (82158s) is within the limit (172800.0s)
[2025-11-27 05:26:59] 2025-11-27 04:25:46,613 | INFO     | monitor loop #5563: job 0:6895334172 is in state 'finished'
[2025-11-27 05:26:59] 2025-11-27 04:25:46,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:26:59] 2025-11-27 04:25:48,010 | INFO     | time since job start (82161s) is within the limit (172800.0s)
[2025-11-27 05:26:59] 2025-11-27 04:25:49,120 | INFO     | monitor loop #5564: job 0:6895334172 is in state 'finished'
[2025-11-27 05:26:59] 2025-11-27 04:25:49,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:26:59] 2025-11-27 04:25:50,017 | INFO     | time since job start (82163s) is within the limit (172800.0s)
[2025-11-27 05:26:59] 2025-11-27 04:25:51,625 | INFO     | monitor loop #5565: job 0:6895334172 is in state 'finished'
[2025-11-27 05:26:59] 2025-11-27 04:25:51,625 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:26:59] 2025-11-27 04:25:52,029 | INFO     | time since job start (82165s) is within the limit (172800.0s)
[2025-11-27 05:26:59] 2025-11-27 04:25:53,794 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:26:59] 2025-11-27 04:25:53,795 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 05:26:59] 2025-11-27 04:25:53,796 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6895334172/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:26:59] 2025-11-27 04:25:53,797 | INFO     | extracted standard info from prmon json
[2025-11-27 05:26:59] 2025-11-27 04:25:53,797 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:26:59] 2025-11-27 04:25:53,797 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:26:59] 2025-11-27 04:25:53,821 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:26:59] 2025-11-27 04:25:53,823 | INFO     | sum of square deviations: 741091176871.276
[2025-11-27 05:26:59] 2025-11-27 04:25:53,880 | INFO     | sum of deviations: 3542927675661.7935
[2025-11-27 05:26:59] 2025-11-27 04:25:53,880 | INFO     | mean x: 1764176650.080778
[2025-11-27 05:26:59] 2025-11-27 04:25:53,880 | INFO     | mean y: 2833982.57591623
[2025-11-27 05:26:59] 2025-11-27 04:25:53,880 | INFO     | intersect: -8431148870.539545
[2025-11-27 05:26:59] 2025-11-27 04:25:53,882 | INFO     | chi2: 21.565559520990714
[2025-11-27 05:26:59] 2025-11-27 04:25:53,884 | INFO     | sum of square deviations: 732808243675.4138
[2025-11-27 05:26:59] 2025-11-27 04:25:53,944 | INFO     | sum of deviations: 3983430122125.0303
[2025-11-27 05:26:59] 2025-11-27 04:25:53,945 | INFO     | mean x: 1764176497.5848348
[2025-11-27 05:26:59] 2025-11-27 04:25:53,945 | INFO     | mean y: 2842094.5262762764
[2025-11-27 05:26:59] 2025-11-27 04:25:53,945 | INFO     | intersect: -9586943312.332737
[2025-11-27 05:26:59] 2025-11-27 04:25:53,947 | INFO     | chi2: 18.410115163711712
[2025-11-27 05:26:59] 2025-11-27 04:25:53,947 | INFO     | current chi2=18.410115163711712 (change=14.631868717376278 %)
[2025-11-27 05:26:59] 2025-11-27 04:25:53,947 | INFO     | right removable region: 1331
[2025-11-27 05:26:59] 2025-11-27 04:25:53,949 | INFO     | sum of square deviations: 732807362225.4133
[2025-11-27 05:26:59] 2025-11-27 04:25:54,011 | INFO     | sum of deviations: 2975618897889.153
[2025-11-27 05:26:59] 2025-11-27 04:25:54,011 | INFO     | mean x: 1764176802.5848348
[2025-11-27 05:26:59] 2025-11-27 04:25:54,011 | INFO     | mean y: 2844426.2154654656
[2025-11-27 05:26:59] 2025-11-27 04:25:54,012 | INFO     | intersect: -7160726934.540503
[2025-11-27 05:26:59] 2025-11-27 04:25:54,013 | INFO     | chi2: 16.647938439206843
[2025-11-27 05:26:59] 2025-11-27 04:25:54,013 | INFO     | current chi2=16.647938439206843 (change=22.80312308612875 %)
[2025-11-27 05:26:59] 2025-11-27 04:25:54,013 | INFO     | left removable region: 10
[2025-11-27 05:26:59] 2025-11-27 04:25:54,016 | INFO     | sum of square deviations: 714801780664.356
[2025-11-27 05:26:59] 2025-11-27 04:25:54,057 | INFO     | time since job start (82167s) is within the limit (172800.0s)
[2025-11-27 05:26:59] 2025-11-27 04:25:54,083 | INFO     | sum of deviations: 3023760835523.967
[2025-11-27 05:26:59] 2025-11-27 04:25:54,083 | INFO     | mean x: 1764176772.0938683
[2025-11-27 05:26:59] 2025-11-27 04:25:54,083 | INFO     | mean y: 2863507.8228614684
[2025-11-27 05:26:59] 2025-11-27 04:25:54,084 | INFO     | intersect: -7459972728.315988
[2025-11-27 05:26:59] 2025-11-27 04:25:54,085 | INFO     | chi2: 9.183279780649858
[2025-11-27 05:26:59] 2025-11-27 04:25:54,085 | INFO     | current memory leak: 4.23 B/s (using 1321 data points, chi2=9.18)
[2025-11-27 05:26:59] 2025-11-27 04:25:54,086 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-27 05:26:59] 2025-11-27 04:25:54,086 | INFO     | ..............................
[2025-11-27 05:26:59] 2025-11-27 04:25:54,087 | INFO     | . Timing measurements:
[2025-11-27 05:26:59] 2025-11-27 04:25:54,087 | INFO     | . get job = 0 s
[2025-11-27 05:26:59] 2025-11-27 04:25:54,087 | INFO     | . initial setup = 10 s
[2025-11-27 05:26:59] 2025-11-27 04:25:54,087 | INFO     | . payload setup = 161 s
[2025-11-27 05:26:59] 2025-11-27 04:25:54,087 | INFO     | . stage-in = 0 s
[2025-11-27 05:26:59] 2025-11-27 04:25:54,087 | INFO     | . payload execution = 81708 s
[2025-11-27 05:26:59] 2025-11-27 04:25:54,087 | INFO     | . stage-out = 5 s
[2025-11-27 05:26:59] 2025-11-27 04:25:54,087 | INFO     | . log creation = 2 s
[2025-11-27 05:26:59] 2025-11-27 04:25:54,087 | INFO     | ..............................
[2025-11-27 05:26:59] 2025-11-27 04:25:54,193 | INFO     | 
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | job summary report
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | --------------------------------------------------
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | PanDA job id: 6895334172
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | task id: 47556149
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | errors: (none)
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | pilot state: finished 
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | transexitcode: 0
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | exeerrorcode: 0
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | exeerrordiag: 
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | exitcode: 0
[2025-11-27 05:26:59] 2025-11-27 04:25:54,194 | INFO     | exitmsg: OK
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | cpuconsumptiontime: 319123 s
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | nevents: 1000
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | neventsw: 0
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | pid: 22964
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | pgrp: 22964
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | corecount: 8
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | event service: False
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | sizes: {0: 2284087, 1: 2284342, 2: 2284342, 12: 2284370, 23: 2284398, 34: 2284426, 45: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 87: 2284722, 92: 2285292, 98
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | --------------------------------------------------
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | 
[2025-11-27 05:26:59] 2025-11-27 04:25:54,195 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-27 05:26:59] 2025-11-27 04:25:54,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,629 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,629 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,630 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:26:59] 2025-11-27 04:25:54,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:26:59] 2025-11-27 04:25:54,631 | INFO     | job 6895334172 has completed (purged errors)
[2025-11-27 05:26:59] 2025-11-27 04:25:54,632 | INFO     | overall cleanup function is called
[2025-11-27 05:26:59] 2025-11-27 04:25:55,657 | INFO     | --- collectZombieJob: --- 10, [22964]
[2025-11-27 05:26:59] 2025-11-27 04:25:55,658 | INFO     | zombie collector waiting for pid 22964
[2025-11-27 05:26:59] 2025-11-27 04:25:55,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:26:59] 2025-11-27 04:25:55,658 | INFO     | collected zombie processes
[2025-11-27 05:26:59] 2025-11-27 04:25:55,658 | INFO     | will attempt to kill all subprocesses of pid=22964
[2025-11-27 05:26:59] 2025-11-27 04:25:55,790 | INFO     | process IDs to be killed: [22964] (in reverse order)
[2025-11-27 05:26:59] 2025-11-27 04:25:56,453 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:26:59] 2025-11-27 04:25:56,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:26:59] 2025-11-27 04:25:56,456 | INFO     | did not find any defunct processes belonging to 22964
[2025-11-27 05:26:59] 2025-11-27 04:25:56,459 | INFO     | did not find any defunct processes belonging to 22964
[2025-11-27 05:26:59] 2025-11-27 04:25:56,491 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:26:59] 2025-11-27 04:25:56,492 | INFO     | ready for new job
[2025-11-27 05:26:59] 2025-11-27 04:25:56,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:26:59] 2025-11-27 04:25:56,497 | INFO     | ***************************************
[2025-11-27 05:26:59] 2025-11-27 04:25:56,497 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:26:59] 2025-11-27 04:25:56,497 | INFO     | ***************************************
[2025-11-27 05:26:59] 2025-11-27 04:25:56,498 | INFO     | 
[2025-11-27 05:26:59] 2025-11-27 04:25:56,498 | INFO     | pilot is running in a VM
[2025-11-27 05:26:59] 2025-11-27 04:25:56,498 | INFO     | architecture information:
[2025-11-27 05:26:59] 2025-11-27 04:25:56,507 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:26:59] 2025-11-27 04:25:56,538 | INFO     | cat /etc/os-release:
[2025-11-27 05:26:59] NAME="CentOS Linux"
[2025-11-27 05:26:59] VERSION="7 (Core)"
[2025-11-27 05:26:59] ID="centos"
[2025-11-27 05:26:59] ID_LIKE="rhel fedora"
[2025-11-27 05:26:59] VERSION_ID="7"
[2025-11-27 05:26:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:26:59] ANSI_COLOR="0;31"
[2025-11-27 05:26:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:26:59] HOME_URL="https://www.centos.org/"
[2025-11-27 05:26:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:26:59] 
[2025-11-27 05:26:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:26:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:26:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:26:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:26:59] 
[2025-11-27 05:26:59] 2025-11-27 04:25:56,538 | INFO     | ***************************************
[2025-11-27 05:26:59] 2025-11-27 04:25:57,041 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-27 05:26:59] 2025-11-27 04:25:57,096 | INFO     | sufficient remaining disk space (495465791488 B)
[2025-11-27 05:26:59] 2025-11-27 04:25:57,096 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:26:59] 2025-11-27 04:25:57,096 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:26:59] 2025-11-27 04:25:57,097 | INFO     | update_server=False
[2025-11-27 05:26:59] 2025-11-27 04:25:57,097 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:26:59] 2025-11-27 04:25:57,098 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:26:59] 2025-11-27 04:25:57,208 | INFO     | all payload control threads have been joined
[2025-11-27 05:26:59] 2025-11-27 04:25:57,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:26:59] 2025-11-27 04:25:57,652 | INFO     | aborting loop
[2025-11-27 05:26:59] 2025-11-27 04:25:57,708 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:26:59] 2025-11-27 04:25:57,967 | INFO     | all data control threads have been joined
[2025-11-27 05:26:59] 2025-11-27 04:25:58,102 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:58,214 | INFO     | [payload] control thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:58,240 | INFO     | all job control threads have been joined
[2025-11-27 05:26:59] 2025-11-27 04:25:58,436 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:58,657 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:58,911 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:58,973 | INFO     | [data] control thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:58,977 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:59,105 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:59,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:26:59] 2025-11-27 04:25:59,220 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:59,246 | INFO     | [job] control thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:59,264 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:59,288 | INFO     | [job] validate thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:59,356 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:25:59,544 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:26:00,218 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:26:01,717 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:26:59] 2025-11-27 04:26:27,224 | INFO     | PID=16364 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:26:59] 2025-11-27 04:26:27,225 | INFO     | .. there are 9 such processes running
[2025-11-27 05:26:59] 2025-11-27 04:26:27,226 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:26:59] 2025-11-27 04:26:27,226 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:26:59] 2025-11-27 04:26:27,226 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:26:59] 2025-11-27 04:26:49,837 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:26:59] 2025-11-27 04:26:50,652 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140202510272320)>', '<ExcThread(monitor, started 140202043479808)>']
[2025-11-27 05:26:59] 2025-11-27 04:26:51,368 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:26:59] 2025-11-27 04:26:51,368 | INFO     | [monitor] control thread has ended
[2025-11-27 05:26:59] 2025-11-27 04:26:55,678 | INFO     | all workflow threads have been joined
[2025-11-27 05:26:59] 2025-11-27 04:26:55,679 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:26:59] 2025-11-27 04:26:55,679 | INFO     | traces error code: 0
[2025-11-27 05:26:59] 2025-11-27 04:26:55,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:26:59] 2025-11-27 04:26:56,002 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:26:59] 2025-11-27 04:26:56,112 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:26:59] 2025-11-27 04:26:56,187 [wrapper] pilotpid: 16364
[2025-11-27 05:26:59] 2025-11-27 04:26:56,266 [wrapper] Pilot exit status: 0
[2025-11-27 05:26:59] 2025-11-27 04:26:56,629 [wrapper] pandaids: 6895334172
[2025-11-27 05:26:59] 2025-11-27 04:26:57,768 [wrapper] cleanup supervisor_pilot 26513 16365
[2025-11-27 05:26:59] 2025-11-27 04:26:57,905 [wrapper] Test setup, not cleaning
[2025-11-27 05:26:59] 2025-11-27 04:26:57,976 [wrapper] apfmon messages muted
[2025-11-27 05:26:59] 2025-11-27 04:26:58,039 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:26:59] 2025-11-27 04:26:58,094 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:26:59]  *** Error codes and diagnostics ***
[2025-11-27 05:26:59]     "exeErrorCode": 0,
[2025-11-27 05:26:59]     "exeErrorDiag": "",
[2025-11-27 05:26:59]     "pilotErrorCode": 0,
[2025-11-27 05:26:59]     "pilotErrorDiag": "",
[2025-11-27 05:26:59]  *** Listing of results directory ***
[2025-11-27 05:26:59] total 1331468
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc    576529 Nov 22 03:56 pilot3.tar.gz
[2025-11-27 05:26:59] -rwx------. 1 boinc boinc     36292 Nov 22 04:07 runpilot2-wrapper.sh
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc      5112 Nov 22 04:07 queuedata.json
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc       100 Nov 26 06:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:26:59] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 06:32 run_atlas
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc       105 Nov 26 06:32 job.xml
[2025-11-27 05:26:59] -rw-r--r--. 2 boinc boinc 408542169 Nov 26 06:32 EVNT.47483658._001059.pool.root.1
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc      6393 Nov 26 06:32 init_data.xml
[2025-11-27 05:26:59] -rw-r--r--. 2 boinc boinc     15847 Nov 26 06:32 start_atlas.sh
[2025-11-27 05:26:59] drwxrwx--x. 2 boinc boinc        68 Nov 26 06:32 shared
[2025-11-27 05:26:59] -rw-r--r--. 2 boinc boinc    590096 Nov 26 06:32 input.tar.gz
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc         0 Nov 26 06:32 boinc_lockfile
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc      2785 Nov 26 06:32 pandaJob.out
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc    991877 Nov 26 06:36 agis_schedconf.cvmfs.json
[2025-11-27 05:26:59] drwx------. 5 boinc boinc      4096 Nov 26 06:36 pilot3
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc       533 Nov 27 05:02 boinc_task_state.xml
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc 924140096 Nov 27 05:23 HITS.47556149._000453.pool.root.1
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc      1032 Nov 27 05:24 memory_monitor_summary.json
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc   1516240 Nov 27 05:24 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc   2430803 Nov 27 05:24 log.47556149._000453.job.log.tgz.1
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc      7937 Nov 27 05:25 heartbeat.json
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc        95 Nov 27 05:26 pilot_heartbeat.json
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc      8192 Nov 27 05:26 boinc_mmap_file
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc        29 Nov 27 05:26 wrapper_checkpoint.txt
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc      4885 Nov 27 05:26 pilotlog.txt
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc  10989893 Nov 27 05:26 log.47556149._000453.job.log.1
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc       353 Nov 27 05:26 output.list
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc       620 Nov 27 05:26 runtime_log
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc  13434880 Nov 27 05:26 result.tar.gz
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc      8833 Nov 27 05:26 runtime_log.err
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc       662 Nov 27 05:26 2fdMDmt8sg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdtJKDmQ48LMo.diag
[2025-11-27 05:26:59] -rw-r--r--. 1 boinc boinc     21201 Nov 27 05:26 stderr.txt
[2025-11-27 05:26:59] HITS file was successfully produced:
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc 924140096 Nov 27 05:23 shared/HITS.pool.root.1
[2025-11-27 05:26:59]  *** Contents of shared directory: ***
[2025-11-27 05:26:59] total 1315168
[2025-11-27 05:26:59] -rw-r--r--. 2 boinc boinc 408542169 Nov 26 06:32 ATLAS.root_0
[2025-11-27 05:26:59] -rw-r--r--. 2 boinc boinc     15847 Nov 26 06:32 start_atlas.sh
[2025-11-27 05:26:59] -rw-r--r--. 2 boinc boinc    590096 Nov 26 06:32 input.tar.gz
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc 924140096 Nov 27 05:23 HITS.pool.root.1
[2025-11-27 05:26:59] -rw-------. 1 boinc boinc  13434880 Nov 27 05:26 result.tar.gz
05:27:01 (12607): run_atlas exited; CPU time 319672.952323
05:27:01 (12607): called boinc_finish(0)

</stderr_txt>
]]>

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