Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:45:45 (3010596): wrapper (7.7.26015): starting
06:45:45 (3010596): wrapper: running run_atlas (--nthreads 2)
[2025-11-26 06:45:45] Arguments: --nthreads 2
[2025-11-26 06:45:45] Threads: 2
[2025-11-26 06:45:45] Checking for CVMFS
[2025-11-26 06:45:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:45:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:45:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:45:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:45:46] 2.9.2.0 1624889 10664 58904 153311 1 81 20326155 36864000 0 130560 1 3394864 99.919 547621 971 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 06:45:46] CVMFS is ok
[2025-11-26 06:45:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:45:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:45:46] Further information can be found at the LHC@home message board.
[2025-11-26 06:45:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:45:46] Checking for apptainer binary...
[2025-11-26 06:45:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:45:46] Running /usr/bin/apptainer --version
[2025-11-26 06:45:46] apptainer version 1.4.1-1.1
[2025-11-26 06:45:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:45:46] thA315
[2025-11-26 06:45:46] apptainer works
[2025-11-26 06:45:46] Set ATHENA_PROC_NUMBER=2
[2025-11-26 06:45:46] Set ATHENA_CORE_NUMBER=2
[2025-11-26 06:45:46] Starting ATLAS job with PandaID=6895351784
[2025-11-26 06:45:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:31:11]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:31:11] 2025-11-26 18:30:30,306 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:31:11] 2025-11-26 18:30:30,306 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:31:11] 2025-11-26 18:30:30,306 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:31:11] 2025-11-26 18:30:30,306 | INFO     | job 6895351784 has completed (purged errors)
[2025-11-26 19:31:11] 2025-11-26 18:30:30,306 | INFO     | overall cleanup function is called
[2025-11-26 19:31:11] 2025-11-26 18:30:31,313 | INFO     | --- collectZombieJob: --- 10, [3020732]
[2025-11-26 19:31:11] 2025-11-26 18:30:31,313 | INFO     | zombie collector waiting for pid 3020732
[2025-11-26 19:31:11] 2025-11-26 18:30:31,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:31:11] 2025-11-26 18:30:31,314 | INFO     | collected zombie processes
[2025-11-26 19:31:11] 2025-11-26 18:30:31,314 | INFO     | will attempt to kill all subprocesses of pid=3020732
[2025-11-26 19:31:11] 2025-11-26 18:30:31,357 | INFO     | process IDs to be killed: [3020732] (in reverse order)
[2025-11-26 19:31:11] 2025-11-26 18:30:31,381 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:31:11] 2025-11-26 18:30:31,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:31:11] 2025-11-26 18:30:31,383 | INFO     | did not find any defunct processes belonging to 3020732
[2025-11-26 19:31:11] 2025-11-26 18:30:31,384 | INFO     | did not find any defunct processes belonging to 3020732
[2025-11-26 19:31:11] 2025-11-26 18:30:31,384 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:31:11] 2025-11-26 18:30:31,384 | INFO     | ready for new job
[2025-11-26 19:31:11] 2025-11-26 18:30:31,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:31:11] 2025-11-26 18:30:31,385 | INFO     | ***************************************
[2025-11-26 19:31:11] 2025-11-26 18:30:31,385 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:31:11] 2025-11-26 18:30:31,385 | INFO     | ***************************************
[2025-11-26 19:31:11] 2025-11-26 18:30:31,385 | INFO     | 
[2025-11-26 19:31:11] 2025-11-26 18:30:31,386 | INFO     | architecture information:
[2025-11-26 19:31:11] 2025-11-26 18:30:31,386 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:31:11] 2025-11-26 18:30:31,394 | INFO     | cat /etc/os-release:
[2025-11-26 19:31:11] NAME="CentOS Linux"
[2025-11-26 19:31:11] VERSION="7 (Core)"
[2025-11-26 19:31:11] ID="centos"
[2025-11-26 19:31:11] ID_LIKE="rhel fedora"
[2025-11-26 19:31:11] VERSION_ID="7"
[2025-11-26 19:31:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:31:11] ANSI_COLOR="0;31"
[2025-11-26 19:31:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:31:11] HOME_URL="https://www.centos.org/"
[2025-11-26 19:31:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:31:11] 
[2025-11-26 19:31:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:31:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:31:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:31:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:31:11] 
[2025-11-26 19:31:11] 2025-11-26 18:30:31,395 | INFO     | ***************************************
[2025-11-26 19:31:11] 2025-11-26 18:30:31,897 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 19:31:11] 2025-11-26 18:30:31,908 | INFO     | sufficient remaining disk space (501787656192 B)
[2025-11-26 19:31:11] 2025-11-26 18:30:31,909 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:31:11] 2025-11-26 18:30:31,909 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:31:11] 2025-11-26 18:30:31,909 | INFO     | update_server=False
[2025-11-26 19:31:11] 2025-11-26 18:30:31,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:31:11] 2025-11-26 18:30:31,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:31:11] 2025-11-26 18:30:31,980 | INFO     | all data control threads have been joined
[2025-11-26 19:31:11] 2025-11-26 18:30:32,029 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 19:31:11] 2025-11-26 18:30:32,030 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 19:31:11] 2025-11-26 18:30:32,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:31:11] 2025-11-26 18:30:32,030 | INFO     | will abort loop
[2025-11-26 19:31:11] 2025-11-26 18:30:32,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:31:11] 2025-11-26 18:30:32,911 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:32,914 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:32,941 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:31:11] 2025-11-26 18:30:32,986 | INFO     | [data] control thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:33,034 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:33,036 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:33,153 | INFO     | all payload control threads have been joined
[2025-11-26 19:31:11] 2025-11-26 18:30:33,175 | INFO     | all job control threads have been joined
[2025-11-26 19:31:11] 2025-11-26 18:30:33,465 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:33,607 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:33,768 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:33,774 | INFO     | [job] validate thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:34,159 | INFO     | [payload] control thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:34,180 | INFO     | [job] control thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:34,337 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:34,383 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:34,413 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:36,947 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:42,040 | INFO     | job.realtimelogging is not enabled
[2025-11-26 19:31:11] 2025-11-26 18:30:43,045 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:31:11] 2025-11-26 18:30:57,335 [wrapper] supervise_pilot (15 min periods counter: 52)
[2025-11-26 19:31:11] 2025-11-26 18:31:03,020 | INFO     | PID=3014305 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:31:11] 2025-11-26 18:31:03,020 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:31:11] 2025-11-26 18:31:03,020 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:31:11] 2025-11-26 18:31:03,020 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:31:11] 2025-11-26 18:31:06,593 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:31:11] 2025-11-26 18:31:06,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140616321800000)>', '<ExcThread(monitor, started 140615476045568)>']
[2025-11-26 19:31:11] 2025-11-26 18:31:07,040 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:31:11] 2025-11-26 18:31:07,041 | INFO     | [monitor] control thread has ended
[2025-11-26 19:31:11] 2025-11-26 18:31:11,755 | INFO     | all workflow threads have been joined
[2025-11-26 19:31:11] 2025-11-26 18:31:11,756 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:31:11] 2025-11-26 18:31:11,756 | INFO     | traces error code: 0
[2025-11-26 19:31:11] 2025-11-26 18:31:11,756 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:31:11] 2025-11-26 18:31:11,798 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:31:11] 2025-11-26 18:31:11,800 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:31:11] 2025-11-26 18:31:11,802 [wrapper] pilotpid: 3014305
[2025-11-26 19:31:11] 2025-11-26 18:31:11,804 [wrapper] Pilot exit status: 0
[2025-11-26 19:31:11] 2025-11-26 18:31:11,810 [wrapper] pandaids: 6895351784
[2025-11-26 19:31:11] 2025-11-26 18:31:11,823 [wrapper] cleanup supervisor_pilot 3110424 3014306
[2025-11-26 19:31:11] 2025-11-26 18:31:11,825 [wrapper] Test setup, not cleaning
[2025-11-26 19:31:11] 2025-11-26 18:31:11,827 [wrapper] apfmon messages muted
[2025-11-26 19:31:11] 2025-11-26 18:31:11,829 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:31:11] 2025-11-26 18:31:11,831 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:31:11]  *** Error codes and diagnostics ***
[2025-11-26 19:31:11]     "exeErrorCode": 0,
[2025-11-26 19:31:11]     "exeErrorDiag": "",
[2025-11-26 19:31:11]     "pilotErrorCode": 0,
[2025-11-26 19:31:11]     "pilotErrorDiag": "",
[2025-11-26 19:31:11]  *** Listing of results directory ***
[2025-11-26 19:31:11] total 1323848
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc      5112 Nov 23 02:11 queuedata.json
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc    576529 Nov 23 02:11 pilot3.tar.gz
[2025-11-26 19:31:11] -rwx------ 1 boinc boinc     36292 Nov 23 02:11 runpilot2-wrapper.sh
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc       100 Nov 26 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:31:11] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 06:45 run_atlas
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc       105 Nov 26 06:45 job.xml
[2025-11-26 19:31:11] -rw-r--r-- 2 boinc boinc 409484311 Nov 26 06:45 EVNT.47483658._001127.pool.root.1
[2025-11-26 19:31:11] -rw-r--r-- 2 boinc boinc    590102 Nov 26 06:45 input.tar.gz
[2025-11-26 19:31:11] -rw-r--r-- 2 boinc boinc     15847 Nov 26 06:45 start_atlas.sh
[2025-11-26 19:31:11] drwxrwx--x 2 boinc boinc      4096 Nov 26 06:45 shared
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc         0 Nov 26 06:45 boinc_setup_complete
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc      6207 Nov 26 06:45 init_data.xml
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc         0 Nov 26 06:45 boinc_lockfile
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc      2782 Nov 26 06:45 pandaJob.out
[2025-11-26 19:31:11] -rw------- 1 boinc boinc    991877 Nov 26 06:45 agis_schedconf.cvmfs.json
[2025-11-26 19:31:11] drwx------ 5 boinc boinc      4096 Nov 26 06:45 pilot3
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc       532 Nov 26 19:27 boinc_task_state.xml
[2025-11-26 19:31:11] -rw------- 1 boinc boinc 926891606 Nov 26 19:29 HITS.47556149._001131.pool.root.1
[2025-11-26 19:31:11] -rw------- 1 boinc boinc      1022 Nov 26 19:30 memory_monitor_summary.json
[2025-11-26 19:31:11] -rw------- 1 boinc boinc   1516240 Nov 26 19:30 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:31:11] -rw------- 1 boinc boinc   1238242 Nov 26 19:30 log.47556149._001131.job.log.tgz.1
[2025-11-26 19:31:11] -rw------- 1 boinc boinc      8554 Nov 26 19:30 heartbeat.json
[2025-11-26 19:31:11] -rw------- 1 boinc boinc        95 Nov 26 19:31 pilot_heartbeat.json
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc        28 Nov 26 19:31 wrapper_checkpoint.txt
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc      8192 Nov 26 19:31 boinc_mmap_file
[2025-11-26 19:31:11] -rw------- 1 boinc boinc      5010 Nov 26 19:31 pilotlog.txt
[2025-11-26 19:31:11] -rw------- 1 boinc boinc   6430294 Nov 26 19:31 log.47556149._001131.job.log.1
[2025-11-26 19:31:11] -rw------- 1 boinc boinc       353 Nov 26 19:31 output.list
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc       620 Nov 26 19:31 runtime_log
[2025-11-26 19:31:11] -rw------- 1 boinc boinc   7690240 Nov 26 19:31 result.tar.gz
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc      8898 Nov 26 19:31 runtime_log.err
[2025-11-26 19:31:11] -rw------- 1 boinc boinc       665 Nov 26 19:31 evFLDmZoDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrVKKDmRU7hxn.diag
[2025-11-26 19:31:11] -rw-r--r-- 1 boinc boinc     11759 Nov 26 19:31 stderr.txt
[2025-11-26 19:31:11] HITS file was successfully produced:
[2025-11-26 19:31:11] -rw------- 1 boinc boinc 926891606 Nov 26 19:29 shared/HITS.pool.root.1
[2025-11-26 19:31:11]  *** Contents of shared directory: ***
[2025-11-26 19:31:11] total 1313172
[2025-11-26 19:31:11] -rw-r--r-- 2 boinc boinc 409484311 Nov 26 06:45 ATLAS.root_0
[2025-11-26 19:31:11] -rw-r--r-- 2 boinc boinc    590102 Nov 26 06:45 input.tar.gz
[2025-11-26 19:31:11] -rw-r--r-- 2 boinc boinc     15847 Nov 26 06:45 start_atlas.sh
[2025-11-26 19:31:11] -rw------- 1 boinc boinc 926891606 Nov 26 19:29 HITS.pool.root.1
[2025-11-26 19:31:11] -rw------- 1 boinc boinc   7690240 Nov 26 19:31 result.tar.gz
19:31:13 (3010596): run_atlas exited; CPU time 91059.992547
19:31:13 (3010596): called boinc_finish(0)

</stderr_txt>
]]>

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