Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:05:09 (1214007): wrapper (7.7.26015): starting
04:05:09 (1214007): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 04:05:09] Arguments: --nthreads 12
[2025-11-23 04:05:09] Threads: 12
[2025-11-23 04:05:09] Checking for CVMFS
[2025-11-23 04:05:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 04:05:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 04:05:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 04:05:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 04:05:10] 2.11.5.0 3664319 23755 292408 153207 3 283 36528288 45568000 16371 130560 0 231013797 99.788 141770723 23340 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-23 04:05:10] CVMFS is ok
[2025-11-23 04:05:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 04:05:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 04:05:10] Further information can be found at the LHC@home message board.
[2025-11-23 04:05:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 04:05:10] Checking for apptainer binary...
[2025-11-23 04:05:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 04:05:10] Running /usr/bin/apptainer --version
[2025-11-23 04:05:10] apptainer version 1.4.1-1.el9
[2025-11-23 04:05:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 04:05:10] wns0080.triumf.lcg
[2025-11-23 04:05:10] apptainer works
[2025-11-23 04:05:10] Set ATHENA_PROC_NUMBER=12
[2025-11-23 04:05:10] Set ATHENA_CORE_NUMBER=12
[2025-11-23 04:05:10] Starting ATLAS job with PandaID=6895351744
[2025-11-23 04:05:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 04:10:30]  *** The last 200 lines of the pilot log: ***
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . Timing measurements:
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . get job = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . initial setup = 3 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . payload setup = 10 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . stage-in = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . payload execution = 82 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . stage-out = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . log creation = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | ..............................
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895351744/pilotlog.txt
[2025-11-23 04:10:30] 2025-11-23 12:09:26,957 | INFO     | monitor loop #63: job 0:6895351744 is in state 'failed'
[2025-11-23 04:10:30] 2025-11-23 12:09:26,957 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-23 04:10:30] 2025-11-23 12:09:26,996 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 04:10:30] - Log from pilotlog.txt -
[2025-11-23 04:10:30] 2025-11-23 12:09:26,926 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 04:10:30] 2025-11-23 12:09:26,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 04:10:30] 2025-11-23 12:09:26,926 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 04:10:30] 2025-11-23 12:09:26,926 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 04:10:30] 2025-11-23 12:09:26,927 | WARNING  | wrong length of table data, x=[1763899565.0, 1763899626.0], y=[1502.0, 602928.0] (must be same and length>=4)
[2025-11-23 04:10:30] 2025-11-23 12:09:26,927 | INFO     | could have reported an average CPU frequency of 2621 MHz (4 samples)
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | ..............................
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . Timing measurements:
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . get job = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . initial setup = 3 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . payload setup = 10 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . stage-in = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . payload execution = 82 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . stage-out = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . log creation = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | ..............................
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895351744/pilotlog.txt
[2025-11-23 04:10:30] 2025-11-23 12:09:26,957 | INFO     | monitor loop #63: job 0:6895351744 is in state 'failed'
[2025-11-23 04:10:30] 2025-11-23 12:09:26,957 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-23 04:10:30] 2025-11-23 12:09:26,997 | WARNING  | 
[2025-11-23 04:10:30] [begin log extracts]
[2025-11-23 04:10:30] - Log from pilotlog.txt -
[2025-11-23 04:10:30] 2025-11-23 12:09:26,926 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 04:10:30] 2025-11-23 12:09:26,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 04:10:30] 2025-11-23 12:09:26,926 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 04:10:30] 2025-11-23 12:09:26,926 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 04:10:30] 2025-11-23 12:09:26,927 | WARNING  | wrong length of table data, x=[1763899565.0, 1763899626.0], y=[1502.0, 602928.0] (must be same and length>=4)
[2025-11-23 04:10:30] 2025-11-23 12:09:26,927 | INFO     | could have reported an average CPU frequency of 2621 MHz (4 samples)
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | ..............................
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . Timing measurements:
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . get job = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . initial setup = 3 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . payload setup = 10 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . stage-in = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . payload execution = 82 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . stage-out = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | . log creation = 0 s
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | ..............................
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 04:10:30] 2025-11-23 12:09:26,928 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895351744/pilotlog.txt
[2025-11-23 04:10:30] 2025-11-23 12:09:26,957 | INFO     | monitor loop #63: job 0:6895351744 is in state 'failed'
[2025-11-23 04:10:30] 2025-11-23 12:09:26,957 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-23 04:10:30] [end log extracts]
[2025-11-23 04:10:30] 2025-11-23 12:09:26,997 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-23 04:10:30] 2025-11-23 12:09:26,998 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 04:10:30] 2025-11-23 12:09:27,127 | INFO     | 
[2025-11-23 04:10:30] 2025-11-23 12:09:27,127 | INFO     | job summary report
[2025-11-23 04:10:30] 2025-11-23 12:09:27,127 | INFO     | --------------------------------------------------
[2025-11-23 04:10:30] 2025-11-23 12:09:27,127 | INFO     | PanDA job id: 6895351744
[2025-11-23 04:10:30] 2025-11-23 12:09:27,127 | INFO     | task id: 47556137
[2025-11-23 04:10:30] 2025-11-23 12:09:27,127 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 04:07:13,548 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 04:10:30] 2025-11-23 12:09:27,127 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | pilot state: failed 
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | transexitcode: 65
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | exeerrorcode: 65
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | exitcode: 65
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | cpuconsumptiontime: 43 s
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | nevents: 0
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | neventsw: 0
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | pid: 1224273
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | pgrp: 1224273
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | corecount: 12
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | event service: False
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | sizes: {0: 2298804, 7: 2299066, 11: 2299094, 97: 2324635, 98: 2328925, 100: 2328953, 223: 2329247}
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | --------------------------------------------------
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | 
[2025-11-23 04:10:30] 2025-11-23 12:09:27,128 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 04:10:30] 2025-11-23 12:09:27,185 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,198 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 04:10:30] 2025-11-23 12:09:27,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,198 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 04:10:30] 2025-11-23 12:09:27,198 | INFO     | job 6895351744 has completed (purged errors)
[2025-11-23 04:10:30] 2025-11-23 12:09:27,199 | INFO     | overall cleanup function is called
[2025-11-23 04:10:30] 2025-11-23 12:09:28,206 | INFO     | --- collectZombieJob: --- 10, [1224273]
[2025-11-23 04:10:30] 2025-11-23 12:09:28,206 | INFO     | zombie collector waiting for pid 1224273
[2025-11-23 04:10:30] 2025-11-23 12:09:28,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 04:10:30] 2025-11-23 12:09:28,206 | INFO     | collected zombie processes
[2025-11-23 04:10:30] 2025-11-23 12:09:28,206 | INFO     | will attempt to kill all subprocesses of pid=1224273
[2025-11-23 04:10:30] 2025-11-23 12:09:28,378 | INFO     | process IDs to be killed: [1224273] (in reverse order)
[2025-11-23 04:10:30] 2025-11-23 12:09:28,446 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 04:10:30] 2025-11-23 12:09:28,446 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 04:10:30] 2025-11-23 12:09:28,453 | INFO     | did not find any defunct processes belonging to 1224273
[2025-11-23 04:10:30] 2025-11-23 12:09:28,461 | INFO     | did not find any defunct processes belonging to 1224273
[2025-11-23 04:10:30] 2025-11-23 12:09:28,462 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 04:10:30] 2025-11-23 12:09:28,462 | INFO     | ready for new job
[2025-11-23 04:10:30] 2025-11-23 12:09:28,462 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 04:10:30] 2025-11-23 12:09:28,463 | INFO     | ***************************************
[2025-11-23 04:10:30] 2025-11-23 12:09:28,463 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 04:10:30] 2025-11-23 12:09:28,463 | INFO     | ***************************************
[2025-11-23 04:10:30] 2025-11-23 12:09:28,464 | INFO     | 
[2025-11-23 04:10:30] 2025-11-23 12:09:28,465 | INFO     | architecture information:
[2025-11-23 04:10:30] 2025-11-23 12:09:28,472 | INFO     | executing command: cat /etc/os-release
[2025-11-23 04:10:30] 2025-11-23 12:09:28,496 | INFO     | cat /etc/os-release:
[2025-11-23 04:10:30] NAME="CentOS Linux"
[2025-11-23 04:10:30] VERSION="7 (Core)"
[2025-11-23 04:10:30] ID="centos"
[2025-11-23 04:10:30] ID_LIKE="rhel fedora"
[2025-11-23 04:10:30] VERSION_ID="7"
[2025-11-23 04:10:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 04:10:30] ANSI_COLOR="0;31"
[2025-11-23 04:10:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 04:10:30] HOME_URL="https://www.centos.org/"
[2025-11-23 04:10:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 04:10:30] 
[2025-11-23 04:10:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 04:10:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 04:10:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 04:10:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 04:10:30] 
[2025-11-23 04:10:30] 2025-11-23 12:09:28,496 | INFO     | ***************************************
[2025-11-23 04:10:30] 2025-11-23 12:09:29,013 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 04:10:30] 2025-11-23 12:09:29,026 | INFO     | sufficient remaining disk space (1629017341952 B)
[2025-11-23 04:10:30] 2025-11-23 12:09:29,027 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 04:10:30] 2025-11-23 12:09:29,027 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 04:10:30] 2025-11-23 12:09:29,027 | INFO     | update_server=False
[2025-11-23 04:10:30] 2025-11-23 12:09:29,027 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 04:10:30] 2025-11-23 12:09:29,027 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 04:10:30] 2025-11-23 12:09:29,181 | INFO     | all payload control threads have been joined
[2025-11-23 04:10:30] 2025-11-23 12:09:29,346 | INFO     | all data control threads have been joined
[2025-11-23 04:10:30] 2025-11-23 12:09:29,461 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 04:10:30] 2025-11-23 12:09:29,461 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 04:10:30] 2025-11-23 12:09:29,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 04:10:30] 2025-11-23 12:09:29,462 | INFO     | will abort loop
[2025-11-23 04:10:30] 2025-11-23 12:09:29,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 04:10:30] 2025-11-23 12:09:30,033 | INFO     | [job] retrieve thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:30,037 | INFO     | [job] queue monitor thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:30,187 | INFO     | [payload] control thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:30,352 | INFO     | [data] control thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:30,468 | INFO     | [job] job monitor thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:30,494 | INFO     | [payload] failed_post thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:30,538 | INFO     | [data] copytool_in thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:30,552 | INFO     | all job control threads have been joined
[2025-11-23 04:10:30] 2025-11-23 12:09:31,088 | INFO     | [payload] validate_post thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:31,093 | INFO     | [job] validate thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:31,172 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:31,410 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:31,429 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:31,481 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:31,558 | INFO     | [job] control thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:31,829 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 04:10:30] 2025-11-23 12:09:31,956 | INFO     | [data] copytool_out thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:35,838 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 04:10:30] 2025-11-23 12:09:59,487 | INFO     | PID=1217658 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 04:10:30] 2025-11-23 12:09:59,487 | INFO     | .. there are 26 such processes running
[2025-11-23 04:10:30] 2025-11-23 12:09:59,487 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 04:10:30] 2025-11-23 12:09:59,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 04:10:30] 2025-11-23 12:09:59,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 04:10:30] 2025-11-23 12:10:24,551 | INFO     | [monitor] cgroup control has ended
[2025-11-23 04:10:30] 2025-11-23 12:10:25,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148323399488)>', '<ExcThread(monitor, started 140147794372352)>']
[2025-11-23 04:10:30] 2025-11-23 12:10:25,648 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 04:10:30] 2025-11-23 12:10:25,648 | INFO     | [monitor] control thread has ended
[2025-11-23 04:10:30] 2025-11-23 12:10:30,486 | INFO     | all workflow threads have been joined
[2025-11-23 04:10:30] 2025-11-23 12:10:30,486 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 04:10:30] 2025-11-23 12:10:30,486 | INFO     | traces error code: 0
[2025-11-23 04:10:30] 2025-11-23 12:10:30,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 04:10:30] 2025-11-23 12:10:30,647 [wrapper] ==== pilot stdout END ====
[2025-11-23 04:10:30] 2025-11-23 12:10:30,660 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 04:10:30] 2025-11-23 12:10:30,677 [wrapper] pilotpid: 1217658
[2025-11-23 04:10:30] 2025-11-23 12:10:30,706 [wrapper] Pilot exit status: 0
[2025-11-23 04:10:30] 2025-11-23 12:10:30,785 [wrapper] pandaids: 6895351744
[2025-11-23 04:10:30] 2025-11-23 12:10:30,896 [wrapper] cleanup supervisor_pilot 1217664 1217659
[2025-11-23 04:10:30] 2025-11-23 12:10:30,899 [wrapper] Test setup, not cleaning
[2025-11-23 04:10:30] 2025-11-23 12:10:30,901 [wrapper] apfmon messages muted
[2025-11-23 04:10:30] 2025-11-23 12:10:30,903 [wrapper] ==== wrapper stdout END ====
[2025-11-23 04:10:30] 2025-11-23 12:10:30,905 [wrapper] ==== wrapper stderr END ====
[2025-11-23 04:10:30]  *** Error codes and diagnostics ***
[2025-11-23 04:10:30]     "exeErrorCode": 65,
[2025-11-23 04:10:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-23 04:10:30]     "pilotErrorCode": 1305,
[2025-11-23 04:10:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-23 04:10:30]  *** Listing of results directory ***
[2025-11-23 04:10:30] total 403080
[2025-11-23 04:10:30] -rwx------. 1 boinc boinc     36292 Nov 22 17:11 runpilot2-wrapper.sh
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc      5112 Nov 22 17:11 queuedata.json
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc    576529 Nov 22 17:11 pilot3.tar.gz
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc       100 Nov 23 04:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 04:10:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 04:05 run_atlas
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc       105 Nov 23 04:05 job.xml
[2025-11-23 04:10:30] -rw-r--r--. 2 boinc boinc 408547735 Nov 23 04:05 EVNT.47483658._000562.pool.root.1
[2025-11-23 04:10:30] -rw-r--r--. 2 boinc boinc     15847 Nov 23 04:05 start_atlas.sh
[2025-11-23 04:10:30] drwxrwx--x. 2 boinc boinc      4096 Nov 23 04:05 shared
[2025-11-23 04:10:30] -rw-r--r--. 2 boinc boinc    590094 Nov 23 04:05 input.tar.gz
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc      6594 Nov 23 04:05 init_data.xml
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc         0 Nov 23 04:05 boinc_lockfile
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc      2786 Nov 23 04:05 pandaJob.out
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc    989784 Nov 23 04:05 agis_schedconf.cvmfs.json
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc   1526164 Nov 23 04:05 agis_ddmendpoints.agis.ALL.json
[2025-11-23 04:10:30] drwx------. 5 boinc boinc      4096 Nov 23 04:05 pilot3
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc       524 Nov 23 04:06 boinc_task_state.xml
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc       989 Nov 23 04:07 memory_monitor_summary.json
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc     48756 Nov 23 04:07 log.47556137._005574.job.log.tgz.1
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc        95 Nov 23 04:09 pilot_heartbeat.json
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc     10339 Nov 23 04:09 heartbeat.json
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc        23 Nov 23 04:10 wrapper_checkpoint.txt
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc      8192 Nov 23 04:10 boinc_mmap_file
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc      5009 Nov 23 04:10 pilotlog.txt
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc     97931 Nov 23 04:10 log.47556137._005574.job.log.1
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc       186 Nov 23 04:10 output.list
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc       620 Nov 23 04:10 runtime_log
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc    163840 Nov 23 04:10 result.tar.gz
[2025-11-23 04:10:30] -rw-------. 1 boinc boinc       644 Nov 23 04:10 xeuKDmUoDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWVKKDmomMqDn.diag
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc      8636 Nov 23 04:10 runtime_log.err
[2025-11-23 04:10:30] -rw-r--r--. 1 boinc boinc     22452 Nov 23 04:10 stderr.txt
[2025-11-23 04:10:31] No HITS result produced
[2025-11-23 04:10:31]  *** Contents of shared directory: ***
[2025-11-23 04:10:31] total 399736
[2025-11-23 04:10:31] -rw-r--r--. 2 boinc boinc 408547735 Nov 23 04:05 ATLAS.root_0
[2025-11-23 04:10:31] -rw-r--r--. 2 boinc boinc     15847 Nov 23 04:05 start_atlas.sh
[2025-11-23 04:10:31] -rw-r--r--. 2 boinc boinc    590094 Nov 23 04:05 input.tar.gz
[2025-11-23 04:10:31] -rw-------. 1 boinc boinc    163840 Nov 23 04:10 result.tar.gz
04:10:32 (1214007): run_atlas exited; CPU time 44.604240
04:10:32 (1214007): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN