Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:58:10 (110420): wrapper (7.7.26015): starting
20:58:10 (110420): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 20:58:11] Arguments: --nthreads 8
[2025-11-23 20:58:11] Threads: 8
[2025-11-23 20:58:11] Checking for CVMFS
[2025-11-23 20:58:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:58:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:58:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:58:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:58:13] 2.13.3.0 8980 26543 322972 153228 0 292 30096158 32935936 22386 16776704 0 147238849 99.772 84324811 32857 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 20:58:13] CVMFS is ok
[2025-11-23 20:58:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:58:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:58:13] Further information can be found at the LHC@home message board.
[2025-11-23 20:58:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:58:13] Checking for apptainer binary...
[2025-11-23 20:58:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:58:13] Running /usr/bin/apptainer --version
[2025-11-23 20:58:13] apptainer version 1.4.4-1.el9
[2025-11-23 20:58:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:58:13] c-5-4.aglt2.org
[2025-11-23 20:58:13] apptainer works
[2025-11-23 20:58:13] Set ATHENA_PROC_NUMBER=8
[2025-11-23 20:58:13] Set ATHENA_CORE_NUMBER=8
[2025-11-23 20:58:14] Starting ATLAS job with PandaID=6895340865
[2025-11-23 20:58:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:45:42 (3403080): wrapper (7.7.26015): starting
13:45:42 (3403080): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 13:45:42] Arguments: --nthreads 9
[2025-11-24 13:45:42] Threads: 9
[2025-11-24 13:45:42] This job has been restarted, cleaning up previous attempt
[2025-11-24 13:45:42] Checking for CVMFS
[2025-11-24 13:45:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:45:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:45:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:45:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:45:43] 2.13.3.0 8980 27550 318872 153255 2 211 29677620 32935936 23732 16776704 0 150968369 99.766 88954013 32767 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 13:45:43] CVMFS is ok
[2025-11-24 13:45:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:45:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:45:43] Further information can be found at the LHC@home message board.
[2025-11-24 13:45:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:45:43] Checking for apptainer binary...
[2025-11-24 13:45:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:45:43] Running /usr/bin/apptainer --version
[2025-11-24 13:45:43] apptainer version 1.4.4-1.el9
[2025-11-24 13:45:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:45:43] c-5-4.aglt2.org
[2025-11-24 13:45:43] apptainer works
[2025-11-24 13:45:43] Set ATHENA_PROC_NUMBER=9
[2025-11-24 13:45:43] Set ATHENA_CORE_NUMBER=9
[2025-11-24 13:45:43] Starting ATLAS job with PandaID=6895340865
[2025-11-24 13:45:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:30:39 (1184751): wrapper (7.7.26015): starting
00:30:39 (1184751): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:30:39] Arguments: --nthreads 9
[2025-11-25 00:30:39] Threads: 9
[2025-11-25 00:30:39] This job has been restarted, cleaning up previous attempt
[2025-11-25 00:30:39] Checking for CVMFS
[2025-11-25 00:30:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:30:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:30:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:30:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:30:39] 2.13.3.0 8980 28195 320120 153272 3 111 17773321 32935936 22265 16776704 0 153250889 99.765 90464893 32800 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:30:39] CVMFS is ok
[2025-11-25 00:30:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:30:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:30:39] Further information can be found at the LHC@home message board.
[2025-11-25 00:30:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:30:39] Checking for apptainer binary...
[2025-11-25 00:30:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:30:39] Running /usr/bin/apptainer --version
[2025-11-25 00:30:39] apptainer version 1.4.4-1.el9
[2025-11-25 00:30:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:30:39] c-5-4.aglt2.org
[2025-11-25 00:30:39] apptainer works
[2025-11-25 00:30:39] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:30:39] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:30:39] Starting ATLAS job with PandaID=6895340865
[2025-11-25 00:30:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:44:30]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:44:30] 2025-11-26 01:43:55,586 | INFO     | time since job start (72784s) is within the limit (172800.0s)
[2025-11-25 20:44:30] 2025-11-26 01:43:55,961 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 20:44:30] 2025-11-26 01:43:55,971 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.093575
[2025-11-25 20:44:30] 2025-11-26 01:43:55,978 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895340865/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:44:30] 2025-11-26 01:43:55,979 | INFO     | extracted standard info from prmon json
[2025-11-25 20:44:30] 2025-11-26 01:43:55,979 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:44:30] 2025-11-26 01:43:55,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:44:30] 2025-11-26 01:43:56,001 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:44:30] 2025-11-26 01:43:56,003 | INFO     | sum of square deviations: 526490279949.9496
[2025-11-25 20:44:30] 2025-11-26 01:43:56,049 | INFO     | sum of deviations: 3529880069215.1943
[2025-11-25 20:44:30] 2025-11-26 01:43:56,053 | INFO     | mean x: 1764085036.917854
[2025-11-25 20:44:30] 2025-11-26 01:43:56,054 | INFO     | mean y: 3090561.3998323553
[2025-11-25 20:44:30] 2025-11-26 01:43:56,054 | INFO     | intersect: -11824304642.950474
[2025-11-25 20:44:30] 2025-11-26 01:43:56,055 | INFO     | chi2: 7.610859731454295
[2025-11-25 20:44:30] 2025-11-26 01:43:56,057 | INFO     | sum of square deviations: 519898798356.48157
[2025-11-25 20:44:30] 2025-11-26 01:43:56,092 | INFO     | sum of deviations: 3988969959762.4062
[2025-11-25 20:44:30] 2025-11-26 01:43:56,092 | INFO     | mean x: 1764084884.425926
[2025-11-25 20:44:30] 2025-11-26 01:43:56,092 | INFO     | mean y: 3101182.265993266
[2025-11-25 20:44:30] 2025-11-26 01:43:56,093 | INFO     | intersect: -13531997634.44822
[2025-11-25 20:44:30] 2025-11-26 01:43:56,094 | INFO     | chi2: 4.025933062714712
[2025-11-25 20:44:30] 2025-11-26 01:43:56,094 | INFO     | current chi2=4.025933062714712 (change=47.10278201454344 %)
[2025-11-25 20:44:30] 2025-11-26 01:43:56,096 | INFO     | sum of square deviations: 513362501147.7246
[2025-11-25 20:44:30] 2025-11-26 01:43:56,130 | INFO     | sum of deviations: 4218942810343.4395
[2025-11-25 20:44:30] 2025-11-26 01:43:56,131 | INFO     | mean x: 1764084731.9332206
[2025-11-25 20:44:30] 2025-11-26 01:43:56,131 | INFO     | mean y: 3106541.2713440405
[2025-11-25 20:44:30] 2025-11-26 01:43:56,131 | INFO     | intersect: -14494587739.060652
[2025-11-25 20:44:30] 2025-11-26 01:43:56,133 | INFO     | chi2: 2.696021193531671
[2025-11-25 20:44:30] 2025-11-26 01:43:56,133 | INFO     | current chi2=2.696021193531671 (change=33.033630923964566 %)
[2025-11-25 20:44:30] 2025-11-26 01:43:56,135 | INFO     | sum of square deviations: 506881084272.09906
[2025-11-25 20:44:30] 2025-11-26 01:43:56,175 | INFO     | sum of deviations: 4313012775054.124
[2025-11-25 20:44:30] 2025-11-26 01:43:56,175 | INFO     | mean x: 1764084579.4388795
[2025-11-25 20:44:30] 2025-11-26 01:43:56,175 | INFO     | mean y: 3108753.1544991513
[2025-11-25 20:44:30] 2025-11-26 01:43:56,176 | INFO     | intersect: -15007353391.673805
[2025-11-25 20:44:30] 2025-11-26 01:43:56,181 | INFO     | chi2: 2.3923021689998567
[2025-11-25 20:44:30] 2025-11-26 01:43:56,182 | INFO     | current chi2=2.3923021689998567 (change=11.2654538940755 %)
[2025-11-25 20:44:30] 2025-11-26 01:43:56,182 | INFO     | right removable region: 1177
[2025-11-25 20:44:30] 2025-11-26 01:43:56,183 | INFO     | sum of square deviations: 519897620392.0294
[2025-11-25 20:44:30] 2025-11-26 01:43:56,255 | INFO     | sum of deviations: 3211915022545.829
[2025-11-25 20:44:30] 2025-11-26 01:43:56,255 | INFO     | mean x: 1764085189.4234006
[2025-11-25 20:44:30] 2025-11-26 01:43:56,255 | INFO     | mean y: 3097907.8333333335
[2025-11-25 20:44:30] 2025-11-26 01:43:56,255 | INFO     | intersect: -10895378058.81391
[2025-11-25 20:44:30] 2025-11-26 01:43:56,257 | INFO     | chi2: 5.735732483120596
[2025-11-25 20:44:30] 2025-11-26 01:43:56,257 | INFO     | current chi2=5.735732483120596 (change=24.63752209995594 %)
[2025-11-25 20:44:30] 2025-11-26 01:43:56,257 | INFO     | left removable region: 10
[2025-11-25 20:44:30] 2025-11-26 01:43:56,262 | INFO     | sum of square deviations: 492812838687.81244
[2025-11-25 20:44:30] 2025-11-26 01:43:56,310 | INFO     | sum of deviations: 3889844427120.7144
[2025-11-25 20:44:30] 2025-11-26 01:43:56,310 | INFO     | mean x: 1764084853.947729
[2025-11-25 20:44:30] 2025-11-26 01:43:56,311 | INFO     | mean y: 3119452.5526992287
[2025-11-25 20:44:30] 2025-11-26 01:43:56,311 | INFO     | intersect: -13921062507.413628
[2025-11-25 20:44:30] 2025-11-26 01:43:56,312 | INFO     | chi2: 0.3684320669151669
[2025-11-25 20:44:30] 2025-11-26 01:43:56,313 | INFO     | current memory leak: 7.89 B/s (using 1167 data points, chi2=0.37)
[2025-11-25 20:44:30] 2025-11-26 01:43:56,314 | INFO     | could have reported an average CPU frequency of 2601 MHz (43 samples)
[2025-11-25 20:44:30] 2025-11-26 01:43:56,314 | INFO     | ..............................
[2025-11-25 20:44:30] 2025-11-26 01:43:56,314 | INFO     | . Timing measurements:
[2025-11-25 20:44:30] 2025-11-26 01:43:56,314 | INFO     | . get job = 0 s
[2025-11-25 20:44:30] 2025-11-26 01:43:56,314 | INFO     | . initial setup = 2 s
[2025-11-25 20:44:30] 2025-11-26 01:43:56,314 | INFO     | . payload setup = 5 s
[2025-11-25 20:44:30] 2025-11-26 01:43:56,315 | INFO     | . stage-in = 0 s
[2025-11-25 20:44:30] 2025-11-26 01:43:56,315 | INFO     | . payload execution = 72747 s
[2025-11-25 20:44:30] 2025-11-26 01:43:56,315 | INFO     | . stage-out = 5 s
[2025-11-25 20:44:30] 2025-11-26 01:43:56,315 | INFO     | . log creation = 1 s
[2025-11-25 20:44:30] 2025-11-26 01:43:56,315 | INFO     | ..............................
[2025-11-25 20:44:30] 2025-11-26 01:43:56,531 | INFO     | 
[2025-11-25 20:44:30] 2025-11-26 01:43:56,532 | INFO     | job summary report
[2025-11-25 20:44:30] 2025-11-26 01:43:56,532 | INFO     | --------------------------------------------------
[2025-11-25 20:44:30] 2025-11-26 01:43:56,532 | INFO     | PanDA job id: 6895340865
[2025-11-25 20:44:30] 2025-11-26 01:43:56,532 | INFO     | task id: 47556137
[2025-11-25 20:44:30] 2025-11-26 01:43:56,532 | INFO     | errors: (none)
[2025-11-25 20:44:30] 2025-11-26 01:43:56,532 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:44:30] 2025-11-26 01:43:56,532 | INFO     | pilot state: finished 
[2025-11-25 20:44:30] 2025-11-26 01:43:56,532 | INFO     | transexitcode: 0
[2025-11-25 20:44:30] 2025-11-26 01:43:56,532 | INFO     | exeerrorcode: 0
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | exeerrordiag: 
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | exitcode: 0
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | exitmsg: OK
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | cpuconsumptiontime: 297803 s
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | nevents: 1000
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | neventsw: 0
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | pid: 1229583
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | pgrp: 1229583
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | corecount: 9
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | event service: False
[2025-11-25 20:44:30] 2025-11-26 01:43:56,533 | INFO     | sizes: {0: 2284208, 1: 2284208, 4: 2284498, 11: 2284526, 72754: 2343157, 72760: 2352156, 72762: 2352340, 72769: 2352586}
[2025-11-25 20:44:30] 2025-11-26 01:43:56,534 | INFO     | --------------------------------------------------
[2025-11-25 20:44:30] 2025-11-26 01:43:56,534 | INFO     | 
[2025-11-25 20:44:30] 2025-11-26 01:43:56,534 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 20:44:30] 2025-11-26 01:43:56,557 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,557 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,557 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,557 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,558 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,558 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,558 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,558 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,558 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,558 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,558 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,558 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,559 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,559 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,559 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,559 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,559 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:44:30] 2025-11-26 01:43:56,559 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,559 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:44:30] 2025-11-26 01:43:56,560 | INFO     | job 6895340865 has completed (purged errors)
[2025-11-25 20:44:30] 2025-11-26 01:43:56,560 | INFO     | overall cleanup function is called
[2025-11-25 20:44:30] 2025-11-26 01:43:57,588 | INFO     | --- collectZombieJob: --- 10, [1229583]
[2025-11-25 20:44:30] 2025-11-26 01:43:57,589 | INFO     | zombie collector waiting for pid 1229583
[2025-11-25 20:44:30] 2025-11-26 01:43:57,589 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:44:30] 2025-11-26 01:43:57,589 | INFO     | collected zombie processes
[2025-11-25 20:44:30] 2025-11-26 01:43:57,589 | INFO     | will attempt to kill all subprocesses of pid=1229583
[2025-11-25 20:44:30] 2025-11-26 01:43:58,042 | INFO     | process IDs to be killed: [1229583] (in reverse order)
[2025-11-25 20:44:30] 2025-11-26 01:43:58,231 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:44:30] 2025-11-26 01:43:58,232 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:44:30] 2025-11-26 01:43:58,248 | INFO     | did not find any defunct processes belonging to 1229583
[2025-11-25 20:44:30] 2025-11-26 01:43:58,264 | INFO     | did not find any defunct processes belonging to 1229583
[2025-11-25 20:44:30] 2025-11-26 01:43:58,266 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:44:30] 2025-11-26 01:43:58,266 | INFO     | ready for new job
[2025-11-25 20:44:30] 2025-11-26 01:43:58,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:44:30] 2025-11-26 01:43:58,272 | INFO     | ***************************************
[2025-11-25 20:44:30] 2025-11-26 01:43:58,272 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:44:30] 2025-11-26 01:43:58,272 | INFO     | ***************************************
[2025-11-25 20:44:30] 2025-11-26 01:43:58,272 | INFO     | 
[2025-11-25 20:44:30] 2025-11-26 01:43:58,274 | INFO     | architecture information:
[2025-11-25 20:44:30] 2025-11-26 01:43:58,275 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:44:30] 2025-11-26 01:43:58,296 | INFO     | cat /etc/os-release:
[2025-11-25 20:44:30] NAME="CentOS Linux"
[2025-11-25 20:44:30] VERSION="7 (Core)"
[2025-11-25 20:44:30] ID="centos"
[2025-11-25 20:44:30] ID_LIKE="rhel fedora"
[2025-11-25 20:44:30] VERSION_ID="7"
[2025-11-25 20:44:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:44:30] ANSI_COLOR="0;31"
[2025-11-25 20:44:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:44:30] HOME_URL="https://www.centos.org/"
[2025-11-25 20:44:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:44:30] 
[2025-11-25 20:44:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:44:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:44:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:44:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:44:30] 
[2025-11-25 20:44:30] 2025-11-26 01:43:58,297 | INFO     | ***************************************
[2025-11-25 20:44:30] 2025-11-26 01:43:58,801 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 20:44:30] 2025-11-26 01:43:58,818 | INFO     | sufficient remaining disk space (68324163584 B)
[2025-11-25 20:44:30] 2025-11-26 01:43:58,818 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:44:30] 2025-11-26 01:43:58,819 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:44:30] 2025-11-26 01:43:58,819 | INFO     | update_server=False
[2025-11-25 20:44:30] 2025-11-26 01:43:58,819 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:44:30] 2025-11-26 01:43:58,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:44:30] 2025-11-26 01:43:59,081 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 20:44:30] 2025-11-26 01:43:59,082 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 20:44:30] 2025-11-26 01:43:59,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:44:30] 2025-11-26 01:43:59,082 | INFO     | will abort loop
[2025-11-25 20:44:30] 2025-11-26 01:43:59,309 | INFO     | all data control threads have been joined
[2025-11-25 20:44:30] 2025-11-26 01:43:59,327 | INFO     | all payload control threads have been joined
[2025-11-25 20:44:30] 2025-11-26 01:43:59,729 | INFO     | all job control threads have been joined
[2025-11-25 20:44:30] 2025-11-26 01:43:59,809 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:44:30] 2025-11-26 01:43:59,824 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,034 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,040 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,054 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,087 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,188 | INFO     | [job] validate thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,315 | INFO     | [data] control thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,332 | INFO     | [payload] control thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,486 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,606 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,735 | INFO     | [job] control thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:00,824 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:01,027 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:01,353 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:44:30] 2025-11-26 01:44:01,393 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:01,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:44:30] 2025-11-26 01:44:02,452 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:03,830 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:44:30] 2025-11-26 01:44:05,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512311945024)>', '<ExcThread(monitor, started 140511968999168)>']
[2025-11-25 20:44:30] 2025-11-26 01:44:10,806 | INFO     | all workflow threads have been joined
[2025-11-25 20:44:30] 2025-11-26 01:44:10,807 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:44:30] 2025-11-26 01:44:10,807 | INFO     | traces error code: 0
[2025-11-25 20:44:30] 2025-11-26 01:44:10,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:44:30] 2025-11-26 01:44:29,524 | INFO     | PID=1202936 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:44:30] 2025-11-26 01:44:29,525 | INFO     | .. there are 42 such processes running
[2025-11-25 20:44:30] 2025-11-26 01:44:29,526 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:44:30] 2025-11-26 01:44:29,526 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:44:30] 2025-11-26 01:44:29,526 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:44:30] 2025-11-26 01:44:29,526 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:44:30] 2025-11-26 01:44:29,526 | INFO     | [monitor] control thread has ended
[2025-11-25 20:44:30] 2025-11-26 01:44:29,702 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:44:30] 2025-11-26 01:44:29,718 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:44:30] 2025-11-26 01:44:29,721 [wrapper] pilotpid: 1202936
[2025-11-25 20:44:30] 2025-11-26 01:44:29,734 [wrapper] Pilot exit status: 0
[2025-11-25 20:44:30] 2025-11-26 01:44:29,780 [wrapper] pandaids: 6895340865 6895340865 6895340865
[2025-11-25 20:44:30] 2025-11-26 01:44:29,879 [wrapper] cleanup supervisor_pilot 1057362 1202937
[2025-11-25 20:44:30] 2025-11-26 01:44:29,884 [wrapper] Test setup, not cleaning
[2025-11-25 20:44:30] 2025-11-26 01:44:29,895 [wrapper] apfmon messages muted
[2025-11-25 20:44:30] 2025-11-26 01:44:29,911 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:44:30] 2025-11-26 01:44:29,948 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:44:30]  *** Error codes and diagnostics ***
[2025-11-25 20:44:30]     "exeErrorCode": 0,
[2025-11-25 20:44:30]     "exeErrorDiag": "",
[2025-11-25 20:44:30]     "pilotErrorCode": 0,
[2025-11-25 20:44:30]     "pilotErrorDiag": "",
[2025-11-25 20:44:30]  *** Listing of results directory ***
[2025-11-25 20:44:30] total 1715816
[2025-11-25 20:44:30] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 09:16 pilot3.tar.gz
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 09:35 queuedata.json
[2025-11-25 20:44:30] -rwx------. 1 boincer umatlas     36292 Nov 22 09:39 runpilot2-wrapper.sh
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas       100 Nov 23 20:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:44:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 20:58 run_atlas
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas       105 Nov 23 20:58 job.xml
[2025-11-25 20:44:30] -rw-r--r--. 3 boincer umatlas 408557799 Nov 23 20:58 EVNT.47483658._000397.pool.root.1
[2025-11-25 20:44:30] -rw-r--r--. 3 boincer umatlas 408557799 Nov 23 20:58 ATLAS.root_0
[2025-11-25 20:44:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:58 start_atlas.sh
[2025-11-25 20:44:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 20:58 shared
[2025-11-25 20:44:30] -rw-r--r--. 2 boincer umatlas    590096 Nov 23 20:58 input.tar.gz
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas         0 Nov 23 20:58 boinc_lockfile
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:30 pandaJob.out
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas        57 Nov 25 00:30 setup.sh.local
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas    991801 Nov 25 00:30 agis_schedconf.cvmfs.json
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas       534 Nov 25 20:25 boinc_task_state.xml
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 20:37 init_data.xml
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas 912771523 Nov 25 20:43 HITS.47556137._003922.pool.root.1
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas      1066 Nov 25 20:43 memory_monitor_summary.json
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas   1516240 Nov 25 20:43 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas   2402289 Nov 25 20:43 log.47556137._003922.job.log.tgz.1
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas      8631 Nov 25 20:43 heartbeat.json
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 20:44 boinc_mmap_file
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas        30 Nov 25 20:44 wrapper_checkpoint.txt
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas       823 Nov 25 20:44 pilotlog.txt
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas        96 Nov 25 20:44 pilot_heartbeat.json
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas   9193400 Nov 25 20:44 log.47556137._003922.job.log.1
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas       353 Nov 25 20:44 output.list
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas       620 Nov 25 20:44 runtime_log
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas  11612160 Nov 25 20:44 result.tar.gz
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas      9413 Nov 25 20:44 runtime_log.err
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas       911 Nov 25 20:44 NGwNDmqw3g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsCKKDmCxHFin.diag
[2025-11-25 20:44:30] -rw-r--r--. 1 boincer umatlas     25627 Nov 25 20:44 stderr.txt
[2025-11-25 20:44:30] HITS file was successfully produced:
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas 912771523 Nov 25 20:43 shared/HITS.pool.root.1
[2025-11-25 20:44:30]  *** Contents of shared directory: ***
[2025-11-25 20:44:30] total 1302304
[2025-11-25 20:44:30] -rw-r--r--. 3 boincer umatlas 408557799 Nov 23 20:58 ATLAS.root_0
[2025-11-25 20:44:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 20:58 start_atlas.sh
[2025-11-25 20:44:30] -rw-r--r--. 2 boincer umatlas    590096 Nov 23 20:58 input.tar.gz
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas 912771523 Nov 25 20:43 HITS.pool.root.1
[2025-11-25 20:44:30] -rw-------. 1 boincer umatlas  11612160 Nov 25 20:44 result.tar.gz
20:44:31 (1184751): run_atlas exited; CPU time 300148.658988
20:44:31 (1184751): called boinc_finish(0)

</stderr_txt>
]]>

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