Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:04:25 (1545903): wrapper (7.7.26015): starting
03:04:25 (1545903): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 03:04:25] Arguments: --nthreads 3
[2025-11-26 03:04:25] Threads: 3
[2025-11-26 03:04:25] Checking for CVMFS
[2025-11-26 03:04:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:04:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:04:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:04:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:04:25] 2.9.2.0 52203 11217 96280 153304 1 81 27856237 36864001 0 130560 0 4164202 99.936 559421 5113 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 03:04:25] CVMFS is ok
[2025-11-26 03:04:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 03:04:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 03:04:25] Further information can be found at the LHC@home message board.
[2025-11-26 03:04:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:04:25] Checking for apptainer binary...
[2025-11-26 03:04:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:04:25] Running /usr/bin/apptainer --version
[2025-11-26 03:04:25] apptainer version 1.4.1-1.1
[2025-11-26 03:04:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:04:25] thA371b
[2025-11-26 03:04:25] apptainer works
[2025-11-26 03:04:27] Set ATHENA_PROC_NUMBER=3
[2025-11-26 03:04:27] Set ATHENA_CORE_NUMBER=3
[2025-11-26 03:04:27] Starting ATLAS job with PandaID=6895340880
[2025-11-26 03:04:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:55:19]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:55:19] 2025-11-26 09:54:48,774 | INFO     | update_server=False
[2025-11-26 10:55:19] 2025-11-26 09:54:48,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:55:19] 2025-11-26 09:54:48,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:55:19] 2025-11-26 09:54:48,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:55:19] 2025-11-26 09:54:48,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:55:19] 2025-11-26 09:54:48,775 | INFO     | aborting loop
[2025-11-26 10:55:19] 2025-11-26 09:54:49,776 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:49,780 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:49,780 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:49,835 | INFO     | all data control threads have been joined
[2025-11-26 10:55:19] 2025-11-26 09:54:49,880 | INFO     | all job control threads have been joined
[2025-11-26 10:55:19] 2025-11-26 09:54:50,074 | INFO     | all payload control threads have been joined
[2025-11-26 10:55:19] 2025-11-26 09:54:50,318 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:50,663 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:50,756 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:50,780 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:50,840 | INFO     | [data] control thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:50,885 | INFO     | [job] control thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:51,055 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:51,079 | INFO     | [payload] control thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:51,175 | INFO     | [job] validate thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:51,175 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:51,179 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:51,265 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:54:51,877 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:55:19] 2025-11-26 09:54:55,884 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:55:19] 2025-11-26 09:55:05,269 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:55:19] 2025-11-26 09:55:06,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520206354240)>', '<ExcThread(monitor, started 140519569086208)>']
[2025-11-26 10:55:19] 2025-11-26 09:55:11,669 | INFO     | all workflow threads have been joined
[2025-11-26 10:55:19] 2025-11-26 09:55:11,670 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:55:19] 2025-11-26 09:55:11,670 | INFO     | traces error code: 0
[2025-11-26 10:55:19] 2025-11-26 09:55:11,670 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:55:19] 2025-11-26 09:55:18,880 | INFO     | PID=1549619 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:55:19] 2025-11-26 09:55:18,880 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:55:19] 2025-11-26 09:55:18,880 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:55:19] 2025-11-26 09:55:18,880 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:55:19] 2025-11-26 09:55:18,880 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:55:19] 2025-11-26 09:55:18,880 | INFO     | [monitor] control thread has ended
[2025-11-26 10:55:19] 2025-11-26 09:55:18,926 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:55:19] 2025-11-26 09:55:18,929 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:55:19] 2025-11-26 09:55:18,931 [wrapper] pilotpid: 1549619
[2025-11-26 10:55:19] 2025-11-26 09:55:18,934 [wrapper] Pilot exit status: 0
[2025-11-26 10:55:19] 2025-11-26 09:55:18,941 [wrapper] pandaids: 6895340880
[2025-11-26 10:55:19] 2025-11-26 09:55:18,956 [wrapper] cleanup supervisor_pilot 1605633 1549620
[2025-11-26 10:55:19] 2025-11-26 09:55:18,959 [wrapper] Test setup, not cleaning
[2025-11-26 10:55:19] 2025-11-26 09:55:18,961 [wrapper] apfmon messages muted
[2025-11-26 10:55:19] 2025-11-26 09:55:18,963 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:55:19] 2025-11-26 09:55:18,966 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:55:19]  *** Error codes and diagnostics ***
[2025-11-26 10:55:19]     "exeErrorCode": 0,
[2025-11-26 10:55:19]     "exeErrorDiag": "",
[2025-11-26 10:55:19]     "pilotErrorCode": 0,
[2025-11-26 10:55:19]     "pilotErrorDiag": "",
[2025-11-26 10:55:19]  *** Listing of results directory ***
[2025-11-26 10:55:19] total 1306368
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc    576529 Nov 22 15:16 pilot3.tar.gz
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc      5112 Nov 22 15:57 queuedata.json
[2025-11-26 10:55:19] -rwx------ 1 boinc boinc     36292 Nov 22 15:58 runpilot2-wrapper.sh
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc       100 Nov 26 03:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:55:19] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 03:04 run_atlas
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc       105 Nov 26 03:04 job.xml
[2025-11-26 10:55:19] -rw-r--r-- 2 boinc boinc 407317322 Nov 26 03:04 EVNT.47483658._000398.pool.root.1
[2025-11-26 10:55:19] -rw-r--r-- 2 boinc boinc    590105 Nov 26 03:04 input.tar.gz
[2025-11-26 10:55:19] -rw-r--r-- 2 boinc boinc     15847 Nov 26 03:04 start_atlas.sh
[2025-11-26 10:55:19] drwxrwx--x 2 boinc boinc      4096 Nov 26 03:04 shared
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc         0 Nov 26 03:04 boinc_setup_complete
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc      6441 Nov 26 03:04 init_data.xml
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc         0 Nov 26 03:04 boinc_lockfile
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc      2784 Nov 26 03:04 pandaJob.out
[2025-11-26 10:55:19] -rw------- 1 boinc boinc    991877 Nov 26 03:04 agis_schedconf.cvmfs.json
[2025-11-26 10:55:19] drwx------ 5 boinc boinc      4096 Nov 26 03:04 pilot3
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc       531 Nov 26 10:51 boinc_task_state.xml
[2025-11-26 10:55:19] -rw------- 1 boinc boinc 916229513 Nov 26 10:54 HITS.47556137._003937.pool.root.1
[2025-11-26 10:55:19] -rw------- 1 boinc boinc      1025 Nov 26 10:54 memory_monitor_summary.json
[2025-11-26 10:55:19] -rw------- 1 boinc boinc   1516240 Nov 26 10:54 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:55:19] -rw------- 1 boinc boinc   1163877 Nov 26 10:54 log.47556137._003937.job.log.tgz.1
[2025-11-26 10:55:19] -rw------- 1 boinc boinc      8580 Nov 26 10:54 heartbeat.json
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc        28 Nov 26 10:54 wrapper_checkpoint.txt
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc      8192 Nov 26 10:54 boinc_mmap_file
[2025-11-26 10:55:19] -rw------- 1 boinc boinc       747 Nov 26 10:55 pilotlog.txt
[2025-11-26 10:55:19] -rw------- 1 boinc boinc        95 Nov 26 10:55 pilot_heartbeat.json
[2025-11-26 10:55:19] -rw------- 1 boinc boinc   3976809 Nov 26 10:55 log.47556137._003937.job.log.1
[2025-11-26 10:55:19] -rw------- 1 boinc boinc       353 Nov 26 10:55 output.list
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc       620 Nov 26 10:55 runtime_log
[2025-11-26 10:55:19] -rw------- 1 boinc boinc   5160960 Nov 26 10:55 result.tar.gz
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc      8903 Nov 26 10:55 runtime_log.err
[2025-11-26 10:55:19] -rw------- 1 boinc boinc       666 Nov 26 10:55 QbRNDmzE4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxCKKDmyiejRo.diag
[2025-11-26 10:55:19] -rw-r--r-- 1 boinc boinc      7415 Nov 26 10:55 stderr.txt
[2025-11-26 10:55:19] HITS file was successfully produced:
[2025-11-26 10:55:19] -rw------- 1 boinc boinc 916229513 Nov 26 10:54 shared/HITS.pool.root.1
[2025-11-26 10:55:19]  *** Contents of shared directory: ***
[2025-11-26 10:55:19] total 1298168
[2025-11-26 10:55:19] -rw-r--r-- 2 boinc boinc 407317322 Nov 26 03:04 ATLAS.root_0
[2025-11-26 10:55:19] -rw-r--r-- 2 boinc boinc    590105 Nov 26 03:04 input.tar.gz
[2025-11-26 10:55:19] -rw-r--r-- 2 boinc boinc     15847 Nov 26 03:04 start_atlas.sh
[2025-11-26 10:55:19] -rw------- 1 boinc boinc 916229513 Nov 26 10:54 HITS.pool.root.1
[2025-11-26 10:55:19] -rw------- 1 boinc boinc   5160960 Nov 26 10:55 result.tar.gz
10:55:21 (1545903): run_atlas exited; CPU time 83231.203292
10:55:21 (1545903): called boinc_finish(0)

</stderr_txt>
]]>

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