Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:48:43 (2974096): wrapper (7.7.26015): starting
01:48:43 (2974096): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 01:48:43] Arguments: --nthreads 3
[2025-11-26 01:48:43] Threads: 3
[2025-11-26 01:48:43] Checking for CVMFS
[2025-11-26 01:48:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:48:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:48:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:48:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:48:44] 2.9.2.0 1502042 11172 77660 153303 1 81 35491585 36864001 0 130560 0 3990961 99.860 659564 7636 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 01:48:44] CVMFS is ok
[2025-11-26 01:48:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 01:48:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 01:48:44] Further information can be found at the LHC@home message board.
[2025-11-26 01:48:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:48:44] Checking for apptainer binary...
[2025-11-26 01:48:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:48:44] Running /usr/bin/apptainer --version
[2025-11-26 01:48:44] apptainer version 1.4.1-1.1
[2025-11-26 01:48:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:48:44] atlasA223a
[2025-11-26 01:48:44] apptainer works
[2025-11-26 01:48:44] Set ATHENA_PROC_NUMBER=3
[2025-11-26 01:48:44] Set ATHENA_CORE_NUMBER=3
[2025-11-26 01:48:44] Starting ATLAS job with PandaID=6895351736
[2025-11-26 01:48:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:43:48]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:43:48] 2025-11-26 09:42:59,225 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:43:48] 2025-11-26 09:42:59,225 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:43:48] 2025-11-26 09:42:59,225 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:43:48] 2025-11-26 09:42:59,225 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:43:48] 2025-11-26 09:42:59,226 | INFO     | job 6895351736 has completed (purged errors)
[2025-11-26 10:43:48] 2025-11-26 09:42:59,226 | INFO     | overall cleanup function is called
[2025-11-26 10:43:48] 2025-11-26 09:43:00,233 | INFO     | --- collectZombieJob: --- 10, [2984287]
[2025-11-26 10:43:48] 2025-11-26 09:43:00,234 | INFO     | zombie collector waiting for pid 2984287
[2025-11-26 10:43:48] 2025-11-26 09:43:00,234 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:43:48] 2025-11-26 09:43:00,234 | INFO     | collected zombie processes
[2025-11-26 10:43:48] 2025-11-26 09:43:00,235 | INFO     | will attempt to kill all subprocesses of pid=2984287
[2025-11-26 10:43:48] 2025-11-26 09:43:00,275 | INFO     | process IDs to be killed: [2984287] (in reverse order)
[2025-11-26 10:43:48] 2025-11-26 09:43:00,302 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:43:48] 2025-11-26 09:43:00,302 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:43:48] 2025-11-26 09:43:00,303 | INFO     | did not find any defunct processes belonging to 2984287
[2025-11-26 10:43:48] 2025-11-26 09:43:00,304 | INFO     | did not find any defunct processes belonging to 2984287
[2025-11-26 10:43:48] 2025-11-26 09:43:00,305 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:43:48] 2025-11-26 09:43:00,305 | INFO     | ready for new job
[2025-11-26 10:43:48] 2025-11-26 09:43:00,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:43:48] 2025-11-26 09:43:00,306 | INFO     | ***************************************
[2025-11-26 10:43:48] 2025-11-26 09:43:00,306 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:43:48] 2025-11-26 09:43:00,306 | INFO     | ***************************************
[2025-11-26 10:43:48] 2025-11-26 09:43:00,306 | INFO     | 
[2025-11-26 10:43:48] 2025-11-26 09:43:00,306 | INFO     | architecture information:
[2025-11-26 10:43:48] 2025-11-26 09:43:00,306 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:43:48] 2025-11-26 09:43:00,316 | INFO     | cat /etc/os-release:
[2025-11-26 10:43:48] NAME="CentOS Linux"
[2025-11-26 10:43:48] VERSION="7 (Core)"
[2025-11-26 10:43:48] ID="centos"
[2025-11-26 10:43:48] ID_LIKE="rhel fedora"
[2025-11-26 10:43:48] VERSION_ID="7"
[2025-11-26 10:43:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:43:48] ANSI_COLOR="0;31"
[2025-11-26 10:43:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:43:48] HOME_URL="https://www.centos.org/"
[2025-11-26 10:43:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:43:48] 
[2025-11-26 10:43:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:43:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:43:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:43:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:43:48] 
[2025-11-26 10:43:48] 2025-11-26 09:43:00,316 | INFO     | ***************************************
[2025-11-26 10:43:48] 2025-11-26 09:43:00,820 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 10:43:48] 2025-11-26 09:43:00,833 | INFO     | sufficient remaining disk space (321469284352 B)
[2025-11-26 10:43:48] 2025-11-26 09:43:00,833 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:43:48] 2025-11-26 09:43:00,833 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:43:48] 2025-11-26 09:43:00,833 | INFO     | update_server=False
[2025-11-26 10:43:48] 2025-11-26 09:43:00,834 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:43:48] 2025-11-26 09:43:00,834 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 10:43:48] 2025-11-26 09:43:00,834 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:43:48] 2025-11-26 09:43:00,834 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:43:48] 2025-11-26 09:43:00,834 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:43:48] 2025-11-26 09:43:00,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:43:48] 2025-11-26 09:43:01,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:43:48] 2025-11-26 09:43:01,322 | INFO     | aborting loop
[2025-11-26 10:43:48] 2025-11-26 09:43:01,406 | INFO     | all data control threads have been joined
[2025-11-26 10:43:48] 2025-11-26 09:43:01,839 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:01,840 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:02,128 | INFO     | all payload control threads have been joined
[2025-11-26 10:43:48] 2025-11-26 09:43:02,145 | INFO     | all job control threads have been joined
[2025-11-26 10:43:48] 2025-11-26 09:43:02,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:43:48] 2025-11-26 09:43:02,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:43:48] 2025-11-26 09:43:02,328 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:02,354 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:02,412 | INFO     | [data] control thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:02,699 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:02,721 | INFO     | [job] validate thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:02,737 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:03,043 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:03,083 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:03,134 | INFO     | [payload] control thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:03,151 | INFO     | [job] control thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:03,223 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:04,195 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:06,214 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:11,718 | INFO     | job.realtimelogging is not enabled
[2025-11-26 10:43:48] 2025-11-26 09:43:12,724 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:43:48] 2025-11-26 09:43:42,233 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:43:48] 2025-11-26 09:43:43,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140378483922752)>', '<ExcThread(monitor, started 140377818380032)>']
[2025-11-26 10:43:48] 2025-11-26 09:43:44,059 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:43:48] 2025-11-26 09:43:44,059 | INFO     | [monitor] control thread has ended
[2025-11-26 10:43:48] 2025-11-26 09:43:48,266 | INFO     | all workflow threads have been joined
[2025-11-26 10:43:48] 2025-11-26 09:43:48,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:43:48] 2025-11-26 09:43:48,267 | INFO     | traces error code: 0
[2025-11-26 10:43:48] 2025-11-26 09:43:48,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:43:48] 2025-11-26 09:43:48,316 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:43:48] 2025-11-26 09:43:48,319 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:43:48] 2025-11-26 09:43:48,322 [wrapper] pilotpid: 2977831
[2025-11-26 10:43:48] 2025-11-26 09:43:48,325 [wrapper] Pilot exit status: 0
[2025-11-26 10:43:48] 2025-11-26 09:43:48,333 [wrapper] pandaids: 6895351736
[2025-11-26 10:43:48] 2025-11-26 09:43:48,350 [wrapper] cleanup supervisor_pilot 3040200 2977832
[2025-11-26 10:43:48] 2025-11-26 09:43:48,353 [wrapper] Test setup, not cleaning
[2025-11-26 10:43:48] 2025-11-26 09:43:48,356 [wrapper] apfmon messages muted
[2025-11-26 10:43:48] 2025-11-26 09:43:48,358 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:43:48] 2025-11-26 09:43:48,361 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:43:48]  *** Error codes and diagnostics ***
[2025-11-26 10:43:48]     "exeErrorCode": 0,
[2025-11-26 10:43:48]     "exeErrorDiag": "",
[2025-11-26 10:43:48]     "pilotErrorCode": 0,
[2025-11-26 10:43:48]     "pilotErrorDiag": "",
[2025-11-26 10:43:48]  *** Listing of results directory ***
[2025-11-26 10:43:48] total 1322040
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc    576529 Nov 23 01:28 pilot3.tar.gz
[2025-11-26 10:43:48] -rwx------ 1 boinc boinc     36292 Nov 23 02:08 runpilot2-wrapper.sh
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc      5112 Nov 23 02:08 queuedata.json
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc       100 Nov 26 01:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:43:48] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 01:48 run_atlas
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc       105 Nov 26 01:48 job.xml
[2025-11-26 10:43:48] -rw-r--r-- 2 boinc boinc 412546538 Nov 26 01:48 EVNT.47483658._000561.pool.root.1
[2025-11-26 10:43:48] -rw-r--r-- 2 boinc boinc    590097 Nov 26 01:48 input.tar.gz
[2025-11-26 10:43:48] -rw-r--r-- 2 boinc boinc     15847 Nov 26 01:48 start_atlas.sh
[2025-11-26 10:43:48] drwxrwx--x 2 boinc boinc      4096 Nov 26 01:48 shared
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc         0 Nov 26 01:48 boinc_setup_complete
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc      6199 Nov 26 01:48 init_data.xml
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc         0 Nov 26 01:48 boinc_lockfile
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc      2786 Nov 26 01:48 pandaJob.out
[2025-11-26 10:43:48] -rw------- 1 boinc boinc    991877 Nov 26 01:48 agis_schedconf.cvmfs.json
[2025-11-26 10:43:48] drwx------ 5 boinc boinc      4096 Nov 26 01:48 pilot3
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc       532 Nov 26 10:39 boinc_task_state.xml
[2025-11-26 10:43:48] -rw------- 1 boinc boinc 925908549 Nov 26 10:42 HITS.47556137._005566.pool.root.1
[2025-11-26 10:43:48] -rw------- 1 boinc boinc        95 Nov 26 10:42 pilot_heartbeat.json
[2025-11-26 10:43:48] -rw------- 1 boinc boinc      1024 Nov 26 10:42 memory_monitor_summary.json
[2025-11-26 10:43:48] -rw------- 1 boinc boinc   1516240 Nov 26 10:42 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:43:48] -rw------- 1 boinc boinc   1199184 Nov 26 10:42 log.47556137._005566.job.log.tgz.1
[2025-11-26 10:43:48] -rw------- 1 boinc boinc      8572 Nov 26 10:42 heartbeat.json
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc      8192 Nov 26 10:43 boinc_mmap_file
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc        28 Nov 26 10:43 wrapper_checkpoint.txt
[2025-11-26 10:43:48] -rw------- 1 boinc boinc      4628 Nov 26 10:43 pilotlog.txt
[2025-11-26 10:43:48] -rw------- 1 boinc boinc   4505131 Nov 26 10:43 log.47556137._005566.job.log.1
[2025-11-26 10:43:48] -rw------- 1 boinc boinc       353 Nov 26 10:43 output.list
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc       620 Nov 26 10:43 runtime_log
[2025-11-26 10:43:48] -rw------- 1 boinc boinc   5724160 Nov 26 10:43 result.tar.gz
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc      8918 Nov 26 10:43 runtime_log.err
[2025-11-26 10:43:48] -rw------- 1 boinc boinc       669 Nov 26 10:43 R1KLDmMlDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4UKKDma0hqjn.diag
[2025-11-26 10:43:48] -rw-r--r-- 1 boinc boinc     11457 Nov 26 10:43 stderr.txt
[2025-11-26 10:43:48] HITS file was successfully produced:
[2025-11-26 10:43:48] -rw------- 1 boinc boinc 925908549 Nov 26 10:42 shared/HITS.pool.root.1
[2025-11-26 10:43:48]  *** Contents of shared directory: ***
[2025-11-26 10:43:48] total 1313284
[2025-11-26 10:43:48] -rw-r--r-- 2 boinc boinc 412546538 Nov 26 01:48 ATLAS.root_0
[2025-11-26 10:43:48] -rw-r--r-- 2 boinc boinc    590097 Nov 26 01:48 input.tar.gz
[2025-11-26 10:43:48] -rw-r--r-- 2 boinc boinc     15847 Nov 26 01:48 start_atlas.sh
[2025-11-26 10:43:48] -rw------- 1 boinc boinc 925908549 Nov 26 10:42 HITS.pool.root.1
[2025-11-26 10:43:48] -rw------- 1 boinc boinc   5724160 Nov 26 10:43 result.tar.gz
10:43:50 (2974096): run_atlas exited; CPU time 94796.772520
10:43:50 (2974096): called boinc_finish(0)

</stderr_txt>
]]>

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