Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:33:55 (27218): wrapper (7.7.26015): starting
03:33:55 (27218): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 03:33:55] Arguments: --nthreads 8
[2025-11-26 03:33:55] Threads: 8
[2025-11-26 03:33:55] Checking for CVMFS
[2025-11-26 03:33:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:33:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:33:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:33:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:33:58] 2.11.2.0 7869 284626 139072 153305 2 84 23194125 25165825 1288 130560 11 137624797 99.883 76893787 2656 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 03:33:58] CVMFS is ok
[2025-11-26 03:33:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:33:58] Checking for apptainer binary...
[2025-11-26 03:33:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:33:58] Running /usr/bin/apptainer --version
[2025-11-26 03:33:58] apptainer version 1.3.2-1.el7
[2025-11-26 03:33:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:34:05] cg-vwn276.simple-grid.lan
[2025-11-26 03:34:05] apptainer works
[2025-11-26 03:34:05] Set ATHENA_PROC_NUMBER=8
[2025-11-26 03:34:05] Set ATHENA_CORE_NUMBER=8
[2025-11-26 03:34:05] Starting ATLAS job with PandaID=6895334079
[2025-11-26 03:34:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:52:30]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:52:30] 2025-11-27 02:51:41,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:52:30] 2025-11-27 02:51:42,143 | INFO     | time since job start (87236s) is within the limit (172800.0s)
[2025-11-27 03:52:30] 2025-11-27 02:51:43,819 | INFO     | monitor loop #5875: job 0:6895334079 is in state 'finished'
[2025-11-27 03:52:30] 2025-11-27 02:51:43,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:52:30] 2025-11-27 02:51:44,150 | INFO     | time since job start (87238s) is within the limit (172800.0s)
[2025-11-27 03:52:30] 2025-11-27 02:51:46,165 | INFO     | time since job start (87240s) is within the limit (172800.0s)
[2025-11-27 03:52:30] 2025-11-27 02:51:46,325 | INFO     | monitor loop #5876: job 0:6895334079 is in state 'finished'
[2025-11-27 03:52:30] 2025-11-27 02:51:46,325 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:52:30] 2025-11-27 02:51:48,174 | INFO     | time since job start (87242s) is within the limit (172800.0s)
[2025-11-27 03:52:30] 2025-11-27 02:51:48,834 | INFO     | monitor loop #5877: job 0:6895334079 is in state 'finished'
[2025-11-27 03:52:30] 2025-11-27 02:51:48,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:52:30] 2025-11-27 02:51:50,183 | INFO     | time since job start (87244s) is within the limit (172800.0s)
[2025-11-27 03:52:30] 2025-11-27 02:51:51,318 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:52:30] 2025-11-27 02:51:51,321 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 03:52:30] 2025-11-27 02:51:51,324 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895334079/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:52:30] 2025-11-27 02:51:51,324 | INFO     | extracted standard info from prmon json
[2025-11-27 03:52:30] 2025-11-27 02:51:51,324 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:52:30] 2025-11-27 02:51:51,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:52:30] 2025-11-27 02:51:51,351 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:52:30] 2025-11-27 02:51:51,353 | INFO     | sum of square deviations: 887856156538.7295
[2025-11-27 03:52:30] 2025-11-27 02:51:51,381 | INFO     | monitor loop #5878: job 0:6895334079 is in state 'finished'
[2025-11-27 03:52:30] 2025-11-27 02:51:51,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:52:30] 2025-11-27 02:51:51,426 | INFO     | sum of deviations: 3695898865861.267
[2025-11-27 03:52:30] 2025-11-27 02:51:51,426 | INFO     | mean x: 1764168481.5929577
[2025-11-27 03:52:30] 2025-11-27 02:51:51,426 | INFO     | mean y: 2826538.2669014083
[2025-11-27 03:52:30] 2025-11-27 02:51:51,426 | INFO     | intersect: -7340917425.537203
[2025-11-27 03:52:30] 2025-11-27 02:51:51,428 | INFO     | chi2: 27.384043130808614
[2025-11-27 03:52:30] 2025-11-27 02:51:51,430 | INFO     | sum of square deviations: 878510836057.7358
[2025-11-27 03:52:30] 2025-11-27 02:51:51,491 | INFO     | sum of deviations: 4156832835889.6533
[2025-11-27 03:52:30] 2025-11-27 02:51:51,491 | INFO     | mean x: 1764168329.0968199
[2025-11-27 03:52:30] 2025-11-27 02:51:51,491 | INFO     | mean y: 2834058.9879858657
[2025-11-27 03:52:30] 2025-11-27 02:51:51,491 | INFO     | intersect: -8344647312.254083
[2025-11-27 03:52:30] 2025-11-27 02:51:51,493 | INFO     | chi2: 24.243923540587055
[2025-11-27 03:52:30] 2025-11-27 02:51:51,493 | INFO     | current chi2=24.243923540587055 (change=11.466968464889485 %)
[2025-11-27 03:52:30] 2025-11-27 02:51:51,493 | INFO     | right removable region: 1414
[2025-11-27 03:52:30] 2025-11-27 02:51:51,499 | INFO     | sum of square deviations: 878509889337.7362
[2025-11-27 03:52:30] 2025-11-27 02:51:51,646 | INFO     | sum of deviations: 3085564640973.9585
[2025-11-27 03:52:30] 2025-11-27 02:51:51,646 | INFO     | mean x: 1764168634.0968199
[2025-11-27 03:52:30] 2025-11-27 02:51:51,646 | INFO     | mean y: 2836497.146289753
[2025-11-27 03:52:30] 2025-11-27 02:51:51,647 | INFO     | intersect: -6193401501.025839
[2025-11-27 03:52:30] 2025-11-27 02:51:51,648 | INFO     | chi2: 22.328771832350938
[2025-11-27 03:52:30] 2025-11-27 02:51:51,648 | INFO     | current chi2=22.328771832350938 (change=18.4606461299727 %)
[2025-11-27 03:52:30] 2025-11-27 02:51:51,649 | INFO     | left removable region: 10
[2025-11-27 03:52:30] 2025-11-27 02:51:51,650 | INFO     | sum of square deviations: 858180579571.399
[2025-11-27 03:52:30] 2025-11-27 02:51:51,712 | INFO     | sum of deviations: 3105029443658.336
[2025-11-27 03:52:30] 2025-11-27 02:51:51,713 | INFO     | mean x: 1764168603.6054132
[2025-11-27 03:52:30] 2025-11-27 02:51:51,713 | INFO     | mean y: 2854934.534900285
[2025-11-27 03:52:30] 2025-11-27 02:51:51,713 | INFO     | intersect: -6380178646.239199
[2025-11-27 03:52:30] 2025-11-27 02:51:51,715 | INFO     | chi2: 14.353535109374139
[2025-11-27 03:52:30] 2025-11-27 02:51:51,715 | INFO     | current memory leak: 3.62 B/s (using 1404 data points, chi2=14.35)
[2025-11-27 03:52:30] 2025-11-27 02:51:51,717 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 03:52:30] 2025-11-27 02:51:51,717 | INFO     | ..............................
[2025-11-27 03:52:30] 2025-11-27 02:51:51,717 | INFO     | . Timing measurements:
[2025-11-27 03:52:30] 2025-11-27 02:51:51,717 | INFO     | . get job = 0 s
[2025-11-27 03:52:30] 2025-11-27 02:51:51,717 | INFO     | . initial setup = 14 s
[2025-11-27 03:52:30] 2025-11-27 02:51:51,717 | INFO     | . payload setup = 167 s
[2025-11-27 03:52:30] 2025-11-27 02:51:51,718 | INFO     | . stage-in = 0 s
[2025-11-27 03:52:30] 2025-11-27 02:51:51,718 | INFO     | . payload execution = 86762 s
[2025-11-27 03:52:30] 2025-11-27 02:51:51,718 | INFO     | . stage-out = 6 s
[2025-11-27 03:52:30] 2025-11-27 02:51:51,718 | INFO     | . log creation = 2 s
[2025-11-27 03:52:30] 2025-11-27 02:51:51,718 | INFO     | ..............................
[2025-11-27 03:52:30] 2025-11-27 02:51:52,185 | INFO     | 
[2025-11-27 03:52:30] 2025-11-27 02:51:52,185 | INFO     | job summary report
[2025-11-27 03:52:30] 2025-11-27 02:51:52,185 | INFO     | --------------------------------------------------
[2025-11-27 03:52:30] 2025-11-27 02:51:52,185 | INFO     | PanDA job id: 6895334079
[2025-11-27 03:52:30] 2025-11-27 02:51:52,185 | INFO     | task id: 47556137
[2025-11-27 03:52:30] 2025-11-27 02:51:52,185 | INFO     | errors: (none)
[2025-11-27 03:52:30] 2025-11-27 02:51:52,185 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:52:30] 2025-11-27 02:51:52,185 | INFO     | pilot state: finished 
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | transexitcode: 0
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | exeerrorcode: 0
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | exeerrordiag: 
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | exitcode: 0
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | exitmsg: OK
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | cpuconsumptiontime: 325349 s
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | nevents: 1000
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | neventsw: 0
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | pid: 5188
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | pgrp: 5188
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | corecount: 8
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | event service: False
[2025-11-27 03:52:30] 2025-11-27 02:51:52,186 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 22: 2284320, 33: 2284348, 44: 2284404, 55: 2284560, 66: 2284588, 76: 2284616, 87: 2284672, 98: 2285270, 109: 2285270, 
[2025-11-27 03:52:30] 2025-11-27 02:51:52,187 | INFO     | --------------------------------------------------
[2025-11-27 03:52:30] 2025-11-27 02:51:52,187 | INFO     | 
[2025-11-27 03:52:30] 2025-11-27 02:51:52,187 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-27 03:52:30] 2025-11-27 02:51:52,194 | INFO     | time since job start (87246s) is within the limit (172800.0s)
[2025-11-27 03:52:30] 2025-11-27 02:51:52,700 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,700 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,700 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,702 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,702 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,702 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:52:30] 2025-11-27 02:51:52,702 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:52:30] 2025-11-27 02:51:52,702 | INFO     | job 6895334079 has completed (purged errors)
[2025-11-27 03:52:30] 2025-11-27 02:51:52,702 | INFO     | overall cleanup function is called
[2025-11-27 03:52:30] 2025-11-27 02:51:53,724 | INFO     | --- collectZombieJob: --- 10, [5188]
[2025-11-27 03:52:30] 2025-11-27 02:51:53,724 | INFO     | zombie collector waiting for pid 5188
[2025-11-27 03:52:30] 2025-11-27 02:51:53,724 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:52:30] 2025-11-27 02:51:53,724 | INFO     | collected zombie processes
[2025-11-27 03:52:30] 2025-11-27 02:51:53,724 | INFO     | will attempt to kill all subprocesses of pid=5188
[2025-11-27 03:52:30] 2025-11-27 02:51:53,827 | INFO     | process IDs to be killed: [5188] (in reverse order)
[2025-11-27 03:52:30] 2025-11-27 02:51:54,537 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:52:30] 2025-11-27 02:51:54,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:52:30] 2025-11-27 02:51:54,541 | INFO     | did not find any defunct processes belonging to 5188
[2025-11-27 03:52:30] 2025-11-27 02:51:54,543 | INFO     | did not find any defunct processes belonging to 5188
[2025-11-27 03:52:30] 2025-11-27 02:51:54,563 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:52:30] 2025-11-27 02:51:54,563 | INFO     | ready for new job
[2025-11-27 03:52:30] 2025-11-27 02:51:54,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:52:30] 2025-11-27 02:51:54,568 | INFO     | ***************************************
[2025-11-27 03:52:30] 2025-11-27 02:51:54,568 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:52:30] 2025-11-27 02:51:54,568 | INFO     | ***************************************
[2025-11-27 03:52:30] 2025-11-27 02:51:54,568 | INFO     | 
[2025-11-27 03:52:30] 2025-11-27 02:51:54,569 | INFO     | pilot is running in a VM
[2025-11-27 03:52:30] 2025-11-27 02:51:54,569 | INFO     | architecture information:
[2025-11-27 03:52:30] 2025-11-27 02:51:54,574 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:52:30] 2025-11-27 02:51:54,682 | INFO     | cat /etc/os-release:
[2025-11-27 03:52:30] NAME="CentOS Linux"
[2025-11-27 03:52:30] VERSION="7 (Core)"
[2025-11-27 03:52:30] ID="centos"
[2025-11-27 03:52:30] ID_LIKE="rhel fedora"
[2025-11-27 03:52:30] VERSION_ID="7"
[2025-11-27 03:52:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:52:30] ANSI_COLOR="0;31"
[2025-11-27 03:52:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:52:30] HOME_URL="https://www.centos.org/"
[2025-11-27 03:52:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:52:30] 
[2025-11-27 03:52:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:52:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:52:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:52:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:52:30] 
[2025-11-27 03:52:30] 2025-11-27 02:51:54,682 | INFO     | ***************************************
[2025-11-27 03:52:30] 2025-11-27 02:51:55,186 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-27 03:52:30] 2025-11-27 02:51:55,401 | INFO     | sufficient remaining disk space (495339962368 B)
[2025-11-27 03:52:30] 2025-11-27 02:51:55,402 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:52:30] 2025-11-27 02:51:55,402 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:52:30] 2025-11-27 02:51:55,402 | INFO     | update_server=False
[2025-11-27 03:52:30] 2025-11-27 02:51:55,402 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:52:30] 2025-11-27 02:51:55,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:52:30] 2025-11-27 02:51:55,406 | INFO     | aborting loop
[2025-11-27 03:52:30] 2025-11-27 02:51:55,412 | INFO     | all job control threads have been joined
[2025-11-27 03:52:30] 2025-11-27 02:51:55,637 | INFO     | all payload control threads have been joined
[2025-11-27 03:52:30] 2025-11-27 02:51:55,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:52:30] 2025-11-27 02:51:56,178 | INFO     | all data control threads have been joined
[2025-11-27 03:52:30] 2025-11-27 02:51:56,408 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:56,411 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:56,419 | INFO     | [job] control thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:56,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:52:30] 2025-11-27 02:51:56,643 | INFO     | [payload] control thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:56,804 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:56,941 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:52:30] 2025-11-27 02:51:57,031 | INFO     | [job] validate thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:57,184 | INFO     | [data] control thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:57,235 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:57,251 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:57,355 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:57,454 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:57,548 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:57,662 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:57,947 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:51:57,994 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:52:00,504 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:52:30] 2025-11-27 02:52:17,859 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:52:30] 2025-11-27 02:52:18,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140090565822272)>', '<ExcThread(monitor, started 140090105894656)>']
[2025-11-27 03:52:30] 2025-11-27 02:52:23,912 | INFO     | all workflow threads have been joined
[2025-11-27 03:52:30] 2025-11-27 02:52:23,912 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:52:30] 2025-11-27 02:52:23,912 | INFO     | traces error code: 0
[2025-11-27 03:52:30] 2025-11-27 02:52:23,912 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:52:30] 2025-11-27 02:52:25,432 | INFO     | PID=31001 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 03:52:30] 2025-11-27 02:52:25,432 | INFO     | .. there are 9 such processes running
[2025-11-27 03:52:30] 2025-11-27 02:52:25,433 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:52:30] 2025-11-27 02:52:25,433 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:52:30] 2025-11-27 02:52:25,433 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:52:30] 2025-11-27 02:52:25,433 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:52:30] 2025-11-27 02:52:25,433 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 03:52:30] 2025-11-27 02:52:25,433 | INFO     | [monitor] control thread has ended
[2025-11-27 03:52:30] 2025-11-27 02:52:25,713 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:52:30] 2025-11-27 02:52:25,814 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:52:30] 2025-11-27 02:52:25,901 [wrapper] pilotpid: 31001
[2025-11-27 03:52:30] 2025-11-27 02:52:25,954 [wrapper] Pilot exit status: 0
[2025-11-27 03:52:30] 2025-11-27 02:52:26,306 [wrapper] pandaids: 6895334079
[2025-11-27 03:52:30] 2025-11-27 02:52:27,441 [wrapper] cleanup supervisor_pilot 13554 31002
[2025-11-27 03:52:30] 2025-11-27 02:52:27,520 [wrapper] Test setup, not cleaning
[2025-11-27 03:52:30] 2025-11-27 02:52:27,617 [wrapper] apfmon messages muted
[2025-11-27 03:52:30] 2025-11-27 02:52:27,709 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:52:30] 2025-11-27 02:52:27,793 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:52:30]  *** Error codes and diagnostics ***
[2025-11-27 03:52:30]     "exeErrorCode": 0,
[2025-11-27 03:52:30]     "exeErrorDiag": "",
[2025-11-27 03:52:30]     "pilotErrorCode": 0,
[2025-11-27 03:52:30]     "pilotErrorDiag": "",
[2025-11-27 03:52:30]  *** Listing of results directory ***
[2025-11-27 03:52:30] total 1326216
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc    576529 Nov 22 03:10 pilot3.tar.gz
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc      5112 Nov 22 03:32 queuedata.json
[2025-11-27 03:52:30] -rwx------. 1 boinc boinc     36292 Nov 22 03:33 runpilot2-wrapper.sh
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc       100 Nov 26 03:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:52:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 03:33 run_atlas
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc       105 Nov 26 03:33 job.xml
[2025-11-27 03:52:30] -rw-r--r--. 2 boinc boinc 409311484 Nov 26 03:33 EVNT.47483658._000224.pool.root.1
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc      6390 Nov 26 03:33 init_data.xml
[2025-11-27 03:52:30] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:33 start_atlas.sh
[2025-11-27 03:52:30] drwxrwx--x. 2 boinc boinc        68 Nov 26 03:33 shared
[2025-11-27 03:52:30] -rw-r--r--. 2 boinc boinc    590095 Nov 26 03:33 input.tar.gz
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc         0 Nov 26 03:33 boinc_lockfile
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc      2785 Nov 26 03:34 pandaJob.out
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc    991877 Nov 26 03:37 agis_schedconf.cvmfs.json
[2025-11-27 03:52:30] drwx------. 5 boinc boinc      4096 Nov 26 03:37 pilot3
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc       533 Nov 27 03:22 boinc_task_state.xml
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc 916509551 Nov 27 03:48 HITS.47556137._002209.pool.root.1
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc      1027 Nov 27 03:50 memory_monitor_summary.json
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc   1516240 Nov 27 03:50 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc   2501899 Nov 27 03:50 log.47556137._002209.job.log.tgz.1
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc        95 Nov 27 03:51 pilot_heartbeat.json
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc      8626 Nov 27 03:51 heartbeat.json
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc      8192 Nov 27 03:52 boinc_mmap_file
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc        29 Nov 27 03:52 wrapper_checkpoint.txt
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc       890 Nov 27 03:52 pilotlog.txt
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc  11658353 Nov 27 03:52 log.47556137._002209.job.log.1
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc       353 Nov 27 03:52 output.list
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc       620 Nov 27 03:52 runtime_log
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc  14182400 Nov 27 03:52 result.tar.gz
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc       662 Nov 27 03:52 sr5LDm7bsg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrsJKDmMz603n.diag
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc      8817 Nov 27 03:52 runtime_log.err
[2025-11-27 03:52:30] -rw-r--r--. 1 boinc boinc     21408 Nov 27 03:52 stderr.txt
[2025-11-27 03:52:30] HITS file was successfully produced:
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc 916509551 Nov 27 03:48 shared/HITS.pool.root.1
[2025-11-27 03:52:30]  *** Contents of shared directory: ***
[2025-11-27 03:52:30] total 1309200
[2025-11-27 03:52:30] -rw-r--r--. 2 boinc boinc 409311484 Nov 26 03:33 ATLAS.root_0
[2025-11-27 03:52:30] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:33 start_atlas.sh
[2025-11-27 03:52:30] -rw-r--r--. 2 boinc boinc    590095 Nov 26 03:33 input.tar.gz
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc 916509551 Nov 27 03:48 HITS.pool.root.1
[2025-11-27 03:52:30] -rw-------. 1 boinc boinc  14182400 Nov 27 03:52 result.tar.gz
03:52:31 (27218): run_atlas exited; CPU time 325996.795810
03:52:31 (27218): called boinc_finish(0)

</stderr_txt>
]]>

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