Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:54 (2021499): wrapper (7.7.26015): starting
00:00:54 (2021499): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:00:54] Arguments: --nthreads 12
[2025-11-24 00:00:54] Threads: 12
[2025-11-24 00:00:54] Checking for CVMFS
[2025-11-24 00:00:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:00:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:00:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:00:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:00:56] 2.13.2.0 6099 31075 295684 153233 1 387 35605298 40960000 12648 16776704 0 33118019 99.746 22068124 36157 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:00:56] CVMFS is ok
[2025-11-24 00:00:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:00:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:00:56] Further information can be found at the LHC@home message board.
[2025-11-24 00:00:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:00:56] Checking for apptainer binary...
[2025-11-24 00:00:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:00:56] Running /usr/bin/apptainer --version
[2025-11-24 00:00:56] apptainer version 1.4.4-1.el9
[2025-11-24 00:00:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:00:58] c-210-31-2.aglt2.org
[2025-11-24 00:00:58] apptainer works
[2025-11-24 00:00:58] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:00:58] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:00:58] Starting ATLAS job with PandaID=6895331990
[2025-11-24 00:00:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:10:13 (3193801): wrapper (7.7.26015): starting
14:10:13 (3193801): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 14:10:14] Arguments: --nthreads 10
[2025-11-24 14:10:14] Threads: 10
[2025-11-24 14:10:14] This job has been restarted, cleaning up previous attempt
[2025-11-24 14:10:14] Checking for CVMFS
[2025-11-24 14:10:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:10:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:10:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:10:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:10:17] 2.13.2.0 6099 31924 293256 153256 1 13 37518225 40960001 10251 16776704 0 34450395 99.753 22396002 36199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 14:10:17] CVMFS is ok
[2025-11-24 14:10:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:10:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:10:17] Further information can be found at the LHC@home message board.
[2025-11-24 14:10:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:10:17] Checking for apptainer binary...
[2025-11-24 14:10:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:10:17] Running /usr/bin/apptainer --version
[2025-11-24 14:10:17] apptainer version 1.4.4-1.el9
[2025-11-24 14:10:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:10:18] c-210-31-2.aglt2.org
[2025-11-24 14:10:18] apptainer works
[2025-11-24 14:10:18] Set ATHENA_PROC_NUMBER=10
[2025-11-24 14:10:18] Set ATHENA_CORE_NUMBER=10
[2025-11-24 14:10:18] Starting ATLAS job with PandaID=6895331990
[2025-11-24 14:10:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:53:22]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:53:22] 2025-11-25 17:52:47,995 | INFO     | sum of square deviations: 742709569049.5975
[2025-11-25 12:53:22] 2025-11-25 17:52:48,273 | INFO     | sum of deviations: 4517289203888.149
[2025-11-25 12:53:22] 2025-11-25 17:52:48,274 | INFO     | mean x: 1764052306.439462
[2025-11-25 12:53:22] 2025-11-25 17:52:48,274 | INFO     | mean y: 3265982.606875934
[2025-11-25 12:53:22] 2025-11-25 17:52:48,274 | INFO     | intersect: -10726007977.293896
[2025-11-25 12:53:22] 2025-11-25 17:52:48,275 | INFO     | chi2: 12.094376060251955
[2025-11-25 12:53:22] 2025-11-25 17:52:48,302 | INFO     | sum of square deviations: 734416607980.4137
[2025-11-25 12:53:22] 2025-11-25 17:52:48,342 | INFO     | time since job start (81722s) is within the limit (172800.0s)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,365 | INFO     | sum of deviations: 5046967526773.886
[2025-11-25 12:53:22] 2025-11-25 17:52:48,365 | INFO     | mean x: 1764052153.9654913
[2025-11-25 12:53:22] 2025-11-25 17:52:48,366 | INFO     | mean y: 3275720.3233308326
[2025-11-25 12:53:22] 2025-11-25 17:52:48,366 | INFO     | intersect: -12119426625.804443
[2025-11-25 12:53:22] 2025-11-25 17:52:48,367 | INFO     | chi2: 8.63384362304447
[2025-11-25 12:53:22] 2025-11-25 17:52:48,367 | INFO     | current chi2=8.63384362304447 (change=28.612740499946003 %)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,369 | INFO     | sum of square deviations: 726185242539.8086
[2025-11-25 12:53:22] 2025-11-25 17:52:48,401 | INFO     | sum of deviations: 5473378726003.271
[2025-11-25 12:53:22] 2025-11-25 17:52:48,401 | INFO     | mean x: 1764052001.4879518
[2025-11-25 12:53:22] 2025-11-25 17:52:48,401 | INFO     | mean y: 3283614.235692771
[2025-11-25 12:53:22] 2025-11-25 17:52:48,401 | INFO     | intersect: -13292669168.746334
[2025-11-25 12:53:22] 2025-11-25 17:52:48,403 | INFO     | chi2: 6.132793963763409
[2025-11-25 12:53:22] 2025-11-25 17:52:48,403 | INFO     | current chi2=6.132793963763409 (change=28.967974965466652 %)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,404 | INFO     | sum of square deviations: 718014917550.9796
[2025-11-25 12:53:22] 2025-11-25 17:52:48,424 | INFO     | monitor loop #5059: job 0:6895331990 is in state 'finished'
[2025-11-25 12:53:22] 2025-11-25 17:52:48,425 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,436 | INFO     | sum of deviations: 5743354475252.178
[2025-11-25 12:53:22] 2025-11-25 17:52:48,436 | INFO     | mean x: 1764051849.0037792
[2025-11-25 12:53:22] 2025-11-25 17:52:48,436 | INFO     | mean y: 3288651.163265306
[2025-11-25 12:53:22] 2025-11-25 17:52:48,436 | INFO     | intersect: -14107246985.21282
[2025-11-25 12:53:22] 2025-11-25 17:52:48,438 | INFO     | chi2: 5.045080138359754
[2025-11-25 12:53:22] 2025-11-25 17:52:48,438 | INFO     | current chi2=5.045080138359754 (change=17.73602426284961 %)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,438 | INFO     | right removable region: 1322
[2025-11-25 12:53:22] 2025-11-25 17:52:48,440 | INFO     | sum of square deviations: 734410944130.4135
[2025-11-25 12:53:22] 2025-11-25 17:52:48,472 | INFO     | sum of deviations: 3984194023536.0874
[2025-11-25 12:53:22] 2025-11-25 17:52:48,472 | INFO     | mean x: 1764052458.9654913
[2025-11-25 12:53:22] 2025-11-25 17:52:48,472 | INFO     | mean y: 3275777.306076519
[2025-11-25 12:53:22] 2025-11-25 17:52:48,472 | INFO     | intersect: -9566744005.741152
[2025-11-25 12:53:22] 2025-11-25 17:52:48,474 | INFO     | chi2: 8.95991409220831
[2025-11-25 12:53:22] 2025-11-25 17:52:48,474 | INFO     | current chi2=8.95991409220831 (change=25.9166901411725 %)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,475 | INFO     | sum of square deviations: 726176436052.9694
[2025-11-25 12:53:22] 2025-11-25 17:52:48,507 | INFO     | sum of deviations: 3813372329482.434
[2025-11-25 12:53:22] 2025-11-25 17:52:48,508 | INFO     | mean x: 1764052611.4721386
[2025-11-25 12:53:22] 2025-11-25 17:52:48,508 | INFO     | mean y: 3278940.9578313255
[2025-11-25 12:53:22] 2025-11-25 17:52:48,508 | INFO     | intersect: -9260295422.460917
[2025-11-25 12:53:22] 2025-11-25 17:52:48,509 | INFO     | chi2: 8.772706954366484
[2025-11-25 12:53:22] 2025-11-25 17:52:48,509 | INFO     | current chi2=8.772706954366484 (change=2.0893854105657588 %)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,510 | INFO     | left removable region: 20
[2025-11-25 12:53:22] 2025-11-25 17:52:48,511 | INFO     | sum of square deviations: 684356416130.5845
[2025-11-25 12:53:22] 2025-11-25 17:52:48,542 | INFO     | sum of deviations: 4770382409592.19
[2025-11-25 12:53:22] 2025-11-25 17:52:48,542 | INFO     | mean x: 1764052428.561444
[2025-11-25 12:53:22] 2025-11-25 17:52:48,542 | INFO     | mean y: 3308550.9039938557
[2025-11-25 12:53:22] 2025-11-25 17:52:48,542 | INFO     | intersect: -12293214834.363956
[2025-11-25 12:53:22] 2025-11-25 17:52:48,544 | INFO     | chi2: 1.315092590858467
[2025-11-25 12:53:22] 2025-11-25 17:52:48,544 | INFO     | current memory leak: 6.97 B/s (using 1302 data points, chi2=1.32)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,545 | INFO     | could have reported an average CPU frequency of 2733 MHz (48 samples)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,545 | INFO     | ..............................
[2025-11-25 12:53:22] 2025-11-25 17:52:48,545 | INFO     | . Timing measurements:
[2025-11-25 12:53:22] 2025-11-25 17:52:48,545 | INFO     | . get job = 0 s
[2025-11-25 12:53:22] 2025-11-25 17:52:48,546 | INFO     | . initial setup = 3 s
[2025-11-25 12:53:22] 2025-11-25 17:52:48,546 | INFO     | . payload setup = 20 s
[2025-11-25 12:53:22] 2025-11-25 17:52:48,546 | INFO     | . stage-in = 0 s
[2025-11-25 12:53:22] 2025-11-25 17:52:48,546 | INFO     | . payload execution = 81616 s
[2025-11-25 12:53:22] 2025-11-25 17:52:48,546 | INFO     | . stage-out = 7 s
[2025-11-25 12:53:22] 2025-11-25 17:52:48,546 | INFO     | . log creation = 2 s
[2025-11-25 12:53:22] 2025-11-25 17:52:48,546 | INFO     | ..............................
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | 
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | job summary report
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | --------------------------------------------------
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | PanDA job id: 6895331990
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | task id: 47556137
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | errors: (none)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | pilot state: finished 
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | transexitcode: 0
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | exeerrorcode: 0
[2025-11-25 12:53:22] 2025-11-25 17:52:48,634 | INFO     | exeerrordiag: 
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | exitcode: 0
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | exitmsg: OK
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | cpuconsumptiontime: 253312 s
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | nevents: 1000
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | neventsw: 0
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | pid: 3214532
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | pgrp: 3214532
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | corecount: 10
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | event service: False
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | sizes: {0: 2284138, 1: 2284166, 2: 2284365, 13: 2284683, 23: 2284683, 81641: 2348428, 81650: 2357483, 81681: 2357673}
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | --------------------------------------------------
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | 
[2025-11-25 12:53:22] 2025-11-25 17:52:48,635 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 12:53:22] 2025-11-25 17:52:48,681 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,681 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,683 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:53:22] 2025-11-25 17:52:48,683 | INFO     | job 6895331990 has completed (purged errors)
[2025-11-25 12:53:22] 2025-11-25 17:52:48,683 | INFO     | overall cleanup function is called
[2025-11-25 12:53:22] 2025-11-25 17:52:49,711 | INFO     | --- collectZombieJob: --- 10, [3214532]
[2025-11-25 12:53:22] 2025-11-25 17:52:49,712 | INFO     | zombie collector waiting for pid 3214532
[2025-11-25 12:53:22] 2025-11-25 17:52:49,712 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:53:22] 2025-11-25 17:52:49,712 | INFO     | collected zombie processes
[2025-11-25 12:53:22] 2025-11-25 17:52:49,712 | INFO     | will attempt to kill all subprocesses of pid=3214532
[2025-11-25 12:53:22] 2025-11-25 17:52:50,612 | INFO     | process IDs to be killed: [3214532] (in reverse order)
[2025-11-25 12:53:22] 2025-11-25 17:52:50,746 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:53:22] 2025-11-25 17:52:50,747 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:53:22] 2025-11-25 17:52:50,762 | INFO     | did not find any defunct processes belonging to 3214532
[2025-11-25 12:53:22] 2025-11-25 17:52:50,783 | INFO     | did not find any defunct processes belonging to 3214532
[2025-11-25 12:53:22] 2025-11-25 17:52:50,793 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:53:22] 2025-11-25 17:52:50,793 | INFO     | ready for new job
[2025-11-25 12:53:22] 2025-11-25 17:52:50,793 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:53:22] 2025-11-25 17:52:50,805 | INFO     | ***************************************
[2025-11-25 12:53:22] 2025-11-25 17:52:50,805 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:53:22] 2025-11-25 17:52:50,805 | INFO     | ***************************************
[2025-11-25 12:53:22] 2025-11-25 17:52:50,805 | INFO     | 
[2025-11-25 12:53:22] 2025-11-25 17:52:50,813 | INFO     | architecture information:
[2025-11-25 12:53:22] 2025-11-25 17:52:50,815 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:53:22] 2025-11-25 17:52:50,849 | INFO     | cat /etc/os-release:
[2025-11-25 12:53:22] NAME="CentOS Linux"
[2025-11-25 12:53:22] VERSION="7 (Core)"
[2025-11-25 12:53:22] ID="centos"
[2025-11-25 12:53:22] ID_LIKE="rhel fedora"
[2025-11-25 12:53:22] VERSION_ID="7"
[2025-11-25 12:53:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:53:22] ANSI_COLOR="0;31"
[2025-11-25 12:53:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:53:22] HOME_URL="https://www.centos.org/"
[2025-11-25 12:53:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:53:22] 
[2025-11-25 12:53:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:53:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:53:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:53:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:53:22] 
[2025-11-25 12:53:22] 2025-11-25 17:52:50,849 | INFO     | ***************************************
[2025-11-25 12:53:22] 2025-11-25 17:52:51,353 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 12:53:22] 2025-11-25 17:52:51,425 | INFO     | sufficient remaining disk space (71065141248 B)
[2025-11-25 12:53:22] 2025-11-25 17:52:51,425 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:53:22] 2025-11-25 17:52:51,425 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:53:22] 2025-11-25 17:52:51,426 | INFO     | update_server=False
[2025-11-25 12:53:22] 2025-11-25 17:52:51,426 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:53:22] 2025-11-25 17:52:51,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:53:22] 2025-11-25 17:52:51,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:53:22] 2025-11-25 17:52:51,723 | INFO     | all data control threads have been joined
[2025-11-25 12:53:22] 2025-11-25 17:52:51,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:53:22] 2025-11-25 17:52:51,936 | INFO     | aborting loop
[2025-11-25 12:53:22] 2025-11-25 17:52:52,227 | INFO     | all job control threads have been joined
[2025-11-25 12:53:22] 2025-11-25 17:52:52,314 | INFO     | all payload control threads have been joined
[2025-11-25 12:53:22] 2025-11-25 17:52:52,442 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:52,714 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:52,729 | INFO     | [data] control thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:52,942 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,234 | INFO     | [job] control thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,320 | INFO     | [payload] control thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,337 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,399 | INFO     | [job] validate thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,399 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,436 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,500 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:53:22] 2025-11-25 17:52:53,662 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,903 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:53,903 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:54,665 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:52:55,439 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:53:22] 2025-11-25 17:53:14,577 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:53:22] 2025-11-25 17:53:14,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140089578067776)>', '<ExcThread(monitor, started 140088797288192)>']
[2025-11-25 12:53:22] 2025-11-25 17:53:19,797 | INFO     | all workflow threads have been joined
[2025-11-25 12:53:22] 2025-11-25 17:53:19,798 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:53:22] 2025-11-25 17:53:19,798 | INFO     | traces error code: 0
[2025-11-25 12:53:22] 2025-11-25 17:53:19,798 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:53:22] 2025-11-25 17:53:21,867 | INFO     | PID=3201114 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:53:22] 2025-11-25 17:53:21,867 | INFO     | .. there are 10 such processes running
[2025-11-25 12:53:22] 2025-11-25 17:53:21,868 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:53:22] 2025-11-25 17:53:21,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:53:22] 2025-11-25 17:53:21,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:53:22] 2025-11-25 17:53:21,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:53:22] 2025-11-25 17:53:21,868 | INFO     | [monitor] control thread has ended
[2025-11-25 12:53:22] 2025-11-25 17:53:22,054 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:53:22] 2025-11-25 17:53:22,069 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:53:22] 2025-11-25 17:53:22,095 [wrapper] pilotpid: 3201114
[2025-11-25 12:53:22] 2025-11-25 17:53:22,122 [wrapper] Pilot exit status: 0
[2025-11-25 12:53:22] 2025-11-25 17:53:22,205 [wrapper] pandaids: 6895331990 6895331990
[2025-11-25 12:53:22] 2025-11-25 17:53:22,297 [wrapper] cleanup supervisor_pilot 1132058 3201115
[2025-11-25 12:53:22] 2025-11-25 17:53:22,300 [wrapper] Test setup, not cleaning
[2025-11-25 12:53:22] 2025-11-25 17:53:22,302 [wrapper] apfmon messages muted
[2025-11-25 12:53:22] 2025-11-25 17:53:22,305 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:53:22] 2025-11-25 17:53:22,308 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:53:22]  *** Error codes and diagnostics ***
[2025-11-25 12:53:22]     "exeErrorCode": 0,
[2025-11-25 12:53:22]     "exeErrorDiag": "",
[2025-11-25 12:53:22]     "pilotErrorCode": 0,
[2025-11-25 12:53:22]     "pilotErrorDiag": "",
[2025-11-25 12:53:22]  *** Listing of results directory ***
[2025-11-25 12:53:22] total 1729884
[2025-11-25 12:53:22] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 18:51 pilot3.tar.gz
[2025-11-25 12:53:22] -rwx------. 1 boincer umatlas     36292 Nov 21 19:05 runpilot2-wrapper.sh
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 19:05 queuedata.json
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:53:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:00 run_atlas
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:00 job.xml
[2025-11-25 12:53:22] -rw-r--r--. 3 boincer umatlas 409783887 Nov 24 00:00 EVNT.47483658._000185.pool.root.1
[2025-11-25 12:53:22] -rw-r--r--. 3 boincer umatlas 409783887 Nov 24 00:00 ATLAS.root_0
[2025-11-25 12:53:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 12:53:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:00 shared
[2025-11-25 12:53:22] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 00:00 input.tar.gz
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:00 boinc_lockfile
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 14:10 pandaJob.out
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas        57 Nov 24 14:10 setup.sh.local
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas    991801 Nov 24 14:10 agis_schedconf.cvmfs.json
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas       534 Nov 25 12:28 boinc_task_state.xml
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas      6846 Nov 25 12:46 init_data.xml
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas 921633760 Nov 25 12:51 HITS.47556137._001844.pool.root.1
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas      1067 Nov 25 12:52 memory_monitor_summary.json
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:52 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas   2631793 Nov 25 12:52 log.47556137._001844.job.log.tgz.1
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas      8649 Nov 25 12:52 heartbeat.json
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas        30 Nov 25 12:52 wrapper_checkpoint.txt
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:52 boinc_mmap_file
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas       823 Nov 25 12:53 pilotlog.txt
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas        96 Nov 25 12:53 pilot_heartbeat.json
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas  10510358 Nov 25 12:53 log.47556137._001844.job.log.1
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas       353 Nov 25 12:53 output.list
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:53 runtime_log
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas  13158400 Nov 25 12:53 result.tar.gz
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas      9440 Nov 25 12:53 runtime_log.err
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas       791 Nov 25 12:53 7SnLDmPJqg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3rHKDmuI9Rdm.diag
[2025-11-25 12:53:22] -rw-r--r--. 1 boincer umatlas     23381 Nov 25 12:53 stderr.txt
[2025-11-25 12:53:22] HITS file was successfully produced:
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas 921633760 Nov 25 12:51 shared/HITS.pool.root.1
[2025-11-25 12:53:22]  *** Contents of shared directory: ***
[2025-11-25 12:53:22] total 1313668
[2025-11-25 12:53:22] -rw-r--r--. 3 boincer umatlas 409783887 Nov 24 00:00 ATLAS.root_0
[2025-11-25 12:53:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 12:53:22] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 00:00 input.tar.gz
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas 921633760 Nov 25 12:51 HITS.pool.root.1
[2025-11-25 12:53:22] -rw-------. 1 boincer umatlas  13158400 Nov 25 12:53 result.tar.gz
12:53:24 (3193801): run_atlas exited; CPU time 254205.094422
12:53:24 (3193801): called boinc_finish(0)

</stderr_txt>
]]>

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