Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:31:52 (20125): wrapper (7.7.26015): starting
07:31:52 (20125): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 07:31:52] Arguments: --nthreads 8
[2025-11-25 07:31:52] Threads: 8
[2025-11-25 07:31:52] Checking for CVMFS
[2025-11-25 07:31:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 07:31:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 07:31:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 07:31:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 07:31:54] 2.11.2.0 23292 283427 135340 153273 0 211 21345169 25165824 4350 130560 11 173087198 99.907 77779194 2856 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 07:31:54] CVMFS is ok
[2025-11-25 07:31:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 07:31:54] Checking for apptainer binary...
[2025-11-25 07:31:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 07:31:54] Running /usr/bin/apptainer --version
[2025-11-25 07:31:54] apptainer version 1.3.2-1.el7
[2025-11-25 07:31:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 07:31:57] cg-vwn268.simple-grid.lan
[2025-11-25 07:31:57] apptainer works
[2025-11-25 07:31:57] Set ATHENA_PROC_NUMBER=8
[2025-11-25 07:31:57] Set ATHENA_CORE_NUMBER=8
[2025-11-25 07:31:57] Starting ATLAS job with PandaID=6895340636
[2025-11-25 07:31:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:54:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:54:54] 2025-11-26 07:54:06,022 | INFO     | time since job start (91141s) is within the limit (172800.0s)
[2025-11-26 08:54:54] 2025-11-26 07:54:06,829 | INFO     | monitor loop #6047: job 0:6895340636 is in state 'finished'
[2025-11-26 08:54:54] 2025-11-26 07:54:06,829 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:54:54] 2025-11-26 07:54:08,033 | INFO     | time since job start (91143s) is within the limit (172800.0s)
[2025-11-26 08:54:54] 2025-11-26 07:54:09,339 | INFO     | monitor loop #6048: job 0:6895340636 is in state 'finished'
[2025-11-26 08:54:54] 2025-11-26 07:54:09,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:54:54] 2025-11-26 07:54:10,041 | INFO     | time since job start (91145s) is within the limit (172800.0s)
[2025-11-26 08:54:54] 2025-11-26 07:54:11,844 | INFO     | monitor loop #6049: job 0:6895340636 is in state 'finished'
[2025-11-26 08:54:54] 2025-11-26 07:54:11,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:54:54] 2025-11-26 07:54:12,054 | INFO     | time since job start (91147s) is within the limit (172800.0s)
[2025-11-26 08:54:54] 2025-11-26 07:54:13,234 | INFO     | PID=23936 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 08:54:54] 2025-11-26 07:54:13,235 | INFO     | .. there are 9 such processes running
[2025-11-26 08:54:54] 2025-11-26 07:54:14,235 | INFO     | time since job start (91149s) is within the limit (172800.0s)
[2025-11-26 08:54:54] 2025-11-26 07:54:14,352 | INFO     | monitor loop #6050: job 0:6895340636 is in state 'finished'
[2025-11-26 08:54:54] 2025-11-26 07:54:14,352 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:54:54] 2025-11-26 07:54:15,556 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 08:54:54] 2025-11-26 07:54:15,557 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 08:54:54] 2025-11-26 07:54:15,559 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6895340636/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:54:54] 2025-11-26 07:54:15,559 | INFO     | extracted standard info from prmon json
[2025-11-26 08:54:54] 2025-11-26 07:54:15,560 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:54:54] 2025-11-26 07:54:15,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:54:54] 2025-11-26 07:54:15,590 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:54:54] 2025-11-26 07:54:15,592 | INFO     | sum of square deviations: 1027802339487.817
[2025-11-26 08:54:54] 2025-11-26 07:54:15,677 | INFO     | sum of deviations: 2892822492889.6167
[2025-11-26 08:54:54] 2025-11-26 07:54:15,677 | INFO     | mean x: 1764098068.0643864
[2025-11-26 08:54:54] 2025-11-26 07:54:15,678 | INFO     | mean y: 2868791.6706908117
[2025-11-26 08:54:54] 2025-11-26 07:54:15,678 | INFO     | intersect: -4962310187.687203
[2025-11-26 08:54:54] 2025-11-26 07:54:15,680 | INFO     | chi2: 13.206083855292714
[2025-11-26 08:54:54] 2025-11-26 07:54:15,682 | INFO     | sum of square deviations: 1017497355874.6351
[2025-11-26 08:54:54] 2025-11-26 07:54:15,764 | INFO     | sum of deviations: 3383426412792.187
[2025-11-26 08:54:54] 2025-11-26 07:54:15,765 | INFO     | mean x: 1764097915.5679677
[2025-11-26 08:54:54] 2025-11-26 07:54:15,765 | INFO     | mean y: 2876050.785329744
[2025-11-26 08:54:54] 2025-11-26 07:54:15,765 | INFO     | intersect: -5863178979.061549
[2025-11-26 08:54:54] 2025-11-26 07:54:15,767 | INFO     | chi2: 10.081661012925403
[2025-11-26 08:54:54] 2025-11-26 07:54:15,767 | INFO     | current chi2=10.081661012925403 (change=23.658965644952417 %)
[2025-11-26 08:54:54] 2025-11-26 07:54:15,768 | INFO     | right removable region: 1485
[2025-11-26 08:54:54] 2025-11-26 07:54:15,770 | INFO     | sum of square deviations: 1017496387804.6356
[2025-11-26 08:54:54] 2025-11-26 07:54:15,842 | INFO     | sum of deviations: 2443897102967.0415
[2025-11-26 08:54:54] 2025-11-26 07:54:15,842 | INFO     | mean x: 1764098220.5679677
[2025-11-26 08:54:54] 2025-11-26 07:54:15,842 | INFO     | mean y: 2875431.7025572006
[2025-11-26 08:54:54] 2025-11-26 07:54:15,842 | INFO     | intersect: -4234264456.2310357
[2025-11-26 08:54:54] 2025-11-26 07:54:15,844 | INFO     | chi2: 10.832238442445988
[2025-11-26 08:54:54] 2025-11-26 07:54:15,845 | INFO     | current chi2=10.832238442445988 (change=17.97539254527254 %)
[2025-11-26 08:54:54] 2025-11-26 07:54:15,845 | INFO     | left removable region: 10
[2025-11-26 08:54:54] 2025-11-26 07:54:15,847 | INFO     | sum of square deviations: 995067963642.3827
[2025-11-26 08:54:54] 2025-11-26 07:54:15,923 | INFO     | sum of deviations: 2937423895930.191
[2025-11-26 08:54:54] 2025-11-26 07:54:15,923 | INFO     | mean x: 1764098190.0718644
[2025-11-26 08:54:54] 2025-11-26 07:54:15,923 | INFO     | mean y: 2885965.9227118646
[2025-11-26 08:54:54] 2025-11-26 07:54:15,923 | INFO     | intersect: -5204702226.662913
[2025-11-26 08:54:54] 2025-11-26 07:54:15,925 | INFO     | chi2: 6.8804288563292335
[2025-11-26 08:54:54] 2025-11-26 07:54:15,926 | INFO     | current memory leak: 2.95 B/s (using 1475 data points, chi2=6.88)
[2025-11-26 08:54:54] 2025-11-26 07:54:15,927 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-26 08:54:54] 2025-11-26 07:54:15,927 | INFO     | ..............................
[2025-11-26 08:54:54] 2025-11-26 07:54:15,928 | INFO     | . Timing measurements:
[2025-11-26 08:54:54] 2025-11-26 07:54:15,928 | INFO     | . get job = 0 s
[2025-11-26 08:54:54] 2025-11-26 07:54:15,928 | INFO     | . initial setup = 3 s
[2025-11-26 08:54:54] 2025-11-26 07:54:15,928 | INFO     | . payload setup = 10 s
[2025-11-26 08:54:54] 2025-11-26 07:54:15,928 | INFO     | . stage-in = 0 s
[2025-11-26 08:54:54] 2025-11-26 07:54:15,928 | INFO     | . payload execution = 90936 s
[2025-11-26 08:54:54] 2025-11-26 07:54:15,928 | INFO     | . stage-out = 4 s
[2025-11-26 08:54:54] 2025-11-26 07:54:15,928 | INFO     | . log creation = 2 s
[2025-11-26 08:54:54] 2025-11-26 07:54:15,928 | INFO     | ..............................
[2025-11-26 08:54:54] 2025-11-26 07:54:16,242 | INFO     | time since job start (91151s) is within the limit (172800.0s)
[2025-11-26 08:54:54] 2025-11-26 07:54:16,471 | INFO     | 
[2025-11-26 08:54:54] 2025-11-26 07:54:16,471 | INFO     | job summary report
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | --------------------------------------------------
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | PanDA job id: 6895340636
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | task id: 47556137
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | errors: (none)
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | pilot state: finished 
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | transexitcode: 0
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | exeerrorcode: 0
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | exeerrordiag: 
[2025-11-26 08:54:54] 2025-11-26 07:54:16,472 | INFO     | exitcode: 0
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | exitmsg: OK
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | cpuconsumptiontime: 344051 s
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | nevents: 1000
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | neventsw: 0
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | pid: 30535
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | pgrp: 30535
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | corecount: 8
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | event service: False
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | sizes: {0: 2283430, 1: 2284115, 2: 2284314, 13: 2284314, 24: 2284370, 34: 2284398, 45: 2284554, 56: 2284582, 67: 2284610, 68: 2284900, 77: 2284928, 90948: 2348997,
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | --------------------------------------------------
[2025-11-26 08:54:54] 2025-11-26 07:54:16,473 | INFO     | 
[2025-11-26 08:54:54] 2025-11-26 07:54:16,474 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-26 08:54:54] 2025-11-26 07:54:16,838 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,838 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,838 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,838 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,838 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,838 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,839 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,840 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,840 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:54:54] 2025-11-26 07:54:16,840 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,840 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:54:54] 2025-11-26 07:54:16,840 | INFO     | job 6895340636 has completed (purged errors)
[2025-11-26 08:54:54] 2025-11-26 07:54:16,840 | INFO     | overall cleanup function is called
[2025-11-26 08:54:54] 2025-11-26 07:54:17,870 | INFO     | --- collectZombieJob: --- 10, [30535]
[2025-11-26 08:54:54] 2025-11-26 07:54:17,870 | INFO     | zombie collector waiting for pid 30535
[2025-11-26 08:54:54] 2025-11-26 07:54:17,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:54:54] 2025-11-26 07:54:17,871 | INFO     | collected zombie processes
[2025-11-26 08:54:54] 2025-11-26 07:54:17,871 | INFO     | will attempt to kill all subprocesses of pid=30535
[2025-11-26 08:54:54] 2025-11-26 07:54:17,993 | INFO     | process IDs to be killed: [30535] (in reverse order)
[2025-11-26 08:54:54] 2025-11-26 07:54:18,991 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:54:54] 2025-11-26 07:54:18,991 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:54:54] 2025-11-26 07:54:18,995 | INFO     | did not find any defunct processes belonging to 30535
[2025-11-26 08:54:54] 2025-11-26 07:54:18,997 | INFO     | did not find any defunct processes belonging to 30535
[2025-11-26 08:54:54] 2025-11-26 07:54:19,042 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:54:54] 2025-11-26 07:54:19,043 | INFO     | ready for new job
[2025-11-26 08:54:54] 2025-11-26 07:54:19,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:54:54] 2025-11-26 07:54:19,049 | INFO     | ***************************************
[2025-11-26 08:54:54] 2025-11-26 07:54:19,049 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:54:54] 2025-11-26 07:54:19,049 | INFO     | ***************************************
[2025-11-26 08:54:54] 2025-11-26 07:54:19,049 | INFO     | 
[2025-11-26 08:54:54] 2025-11-26 07:54:19,050 | INFO     | pilot is running in a VM
[2025-11-26 08:54:54] 2025-11-26 07:54:19,050 | INFO     | architecture information:
[2025-11-26 08:54:54] 2025-11-26 07:54:19,056 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:54:54] 2025-11-26 07:54:19,203 | INFO     | cat /etc/os-release:
[2025-11-26 08:54:54] NAME="CentOS Linux"
[2025-11-26 08:54:54] VERSION="7 (Core)"
[2025-11-26 08:54:54] ID="centos"
[2025-11-26 08:54:54] ID_LIKE="rhel fedora"
[2025-11-26 08:54:54] VERSION_ID="7"
[2025-11-26 08:54:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:54:54] ANSI_COLOR="0;31"
[2025-11-26 08:54:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:54:54] HOME_URL="https://www.centos.org/"
[2025-11-26 08:54:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:54:54] 
[2025-11-26 08:54:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:54:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:54:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:54:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:54:54] 
[2025-11-26 08:54:54] 2025-11-26 07:54:19,203 | INFO     | ***************************************
[2025-11-26 08:54:54] 2025-11-26 07:54:19,706 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-26 08:54:54] 2025-11-26 07:54:19,911 | INFO     | sufficient remaining disk space (495790850048 B)
[2025-11-26 08:54:54] 2025-11-26 07:54:19,911 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:54:54] 2025-11-26 07:54:19,911 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:54:54] 2025-11-26 07:54:19,912 | INFO     | update_server=False
[2025-11-26 08:54:54] 2025-11-26 07:54:19,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:54:54] 2025-11-26 07:54:20,161 | INFO     | all data control threads have been joined
[2025-11-26 08:54:54] 2025-11-26 07:54:20,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:54:54] 2025-11-26 07:54:20,371 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:54:54] 2025-11-26 07:54:20,371 | INFO     | aborting loop
[2025-11-26 08:54:54] 2025-11-26 07:54:20,814 | INFO     | all job control threads have been joined
[2025-11-26 08:54:54] 2025-11-26 07:54:20,917 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:20,940 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:20,945 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:20,963 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:20,994 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:21,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:54:54] 2025-11-26 07:54:21,132 | INFO     | all payload control threads have been joined
[2025-11-26 08:54:54] 2025-11-26 07:54:21,167 | INFO     | [data] control thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:21,212 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:21,358 | INFO     | [job] validate thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:21,377 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:21,820 | INFO     | [job] control thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:21,936 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:21,952 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:22,107 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:22,138 | INFO     | [payload] control thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:22,293 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:22,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:54:54] 2025-11-26 07:54:26,526 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:54:54] 2025-11-26 07:54:43,961 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:54:54] 2025-11-26 07:54:45,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140116620572480)>', '<ExcThread(monitor, started 140116152526592)>']
[2025-11-26 08:54:54] 2025-11-26 07:54:49,453 | INFO     | PID=23936 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 08:54:54] 2025-11-26 07:54:49,453 | INFO     | .. there are 9 such processes running
[2025-11-26 08:54:54] 2025-11-26 07:54:49,454 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:54:54] 2025-11-26 07:54:49,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:54:54] 2025-11-26 07:54:49,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:54:54] 2025-11-26 07:54:49,454 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:54:54] 2025-11-26 07:54:49,454 | INFO     | [monitor] control thread has ended
[2025-11-26 08:54:54] 2025-11-26 07:54:50,745 | INFO     | all workflow threads have been joined
[2025-11-26 08:54:54] 2025-11-26 07:54:50,745 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:54:54] 2025-11-26 07:54:50,746 | INFO     | traces error code: 0
[2025-11-26 08:54:54] 2025-11-26 07:54:50,746 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:54:54] 2025-11-26 07:54:50,989 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:54:54] 2025-11-26 07:54:51,053 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:54:54] 2025-11-26 07:54:51,172 [wrapper] pilotpid: 23936
[2025-11-26 08:54:54] 2025-11-26 07:54:51,261 [wrapper] Pilot exit status: 0
[2025-11-26 08:54:54] 2025-11-26 07:54:51,540 [wrapper] pandaids: 6895340636
[2025-11-26 08:54:54] 2025-11-26 07:54:51,894 [wrapper] cleanup supervisor_pilot 21994 23937
[2025-11-26 08:54:54] 2025-11-26 07:54:52,001 [wrapper] Test setup, not cleaning
[2025-11-26 08:54:54] 2025-11-26 07:54:52,061 [wrapper] apfmon messages muted
[2025-11-26 08:54:54] 2025-11-26 07:54:52,155 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:54:54] 2025-11-26 07:54:52,219 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:54:54]  *** Error codes and diagnostics ***
[2025-11-26 08:54:54]     "exeErrorCode": 0,
[2025-11-26 08:54:54]     "exeErrorDiag": "",
[2025-11-26 08:54:54]     "pilotErrorCode": 0,
[2025-11-26 08:54:54]     "pilotErrorDiag": "",
[2025-11-26 08:54:54]  *** Listing of results directory ***
[2025-11-26 08:54:54] total 1343952
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc    576529 Nov 22 15:16 pilot3.tar.gz
[2025-11-26 08:54:54] -rwx------. 1 boinc boinc     36292 Nov 22 15:33 runpilot2-wrapper.sh
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc      5112 Nov 22 15:33 queuedata.json
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc       100 Nov 25 07:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:54:54] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 07:31 run_atlas
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc       105 Nov 25 07:31 job.xml
[2025-11-26 08:54:54] -rw-r--r--. 2 boinc boinc 408370113 Nov 25 07:31 EVNT.47483658._000393.pool.root.1
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc      6392 Nov 25 07:31 init_data.xml
[2025-11-26 08:54:54] -rw-r--r--. 2 boinc boinc     15847 Nov 25 07:31 start_atlas.sh
[2025-11-26 08:54:54] drwxrwx--x. 2 boinc boinc        68 Nov 25 07:31 shared
[2025-11-26 08:54:54] -rw-r--r--. 2 boinc boinc    590103 Nov 25 07:31 input.tar.gz
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc         0 Nov 25 07:31 boinc_lockfile
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc      2784 Nov 25 07:31 pandaJob.out
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc    991801 Nov 25 07:35 agis_schedconf.cvmfs.json
[2025-11-26 08:54:54] drwx------. 5 boinc boinc      4096 Nov 25 07:35 pilot3
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc       533 Nov 26 08:31 boinc_task_state.xml
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc 934690835 Nov 26 08:51 HITS.47556137._003890.pool.root.1
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc      1033 Nov 26 08:52 memory_monitor_summary.json
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc   1516240 Nov 26 08:52 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc   2541994 Nov 26 08:52 log.47556137._003890.job.log.tgz.1
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc        95 Nov 26 08:54 pilot_heartbeat.json
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc      8637 Nov 26 08:54 heartbeat.json
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc      8192 Nov 26 08:54 boinc_mmap_file
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc        29 Nov 26 08:54 wrapper_checkpoint.txt
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc      4884 Nov 26 08:54 pilotlog.txt
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc  12078692 Nov 26 08:54 log.47556137._003890.job.log.1
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc       353 Nov 26 08:54 output.list
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc       620 Nov 26 08:54 runtime_log
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc  14643200 Nov 26 08:54 result.tar.gz
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc      8817 Nov 26 08:54 runtime_log.err
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc       662 Nov 26 08:54 1jgMDmyq3g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmD8HKDmFzL0Fo.diag
[2025-11-26 08:54:54] -rw-r--r--. 1 boinc boinc     21510 Nov 26 08:54 stderr.txt
[2025-11-26 08:54:54] HITS file was successfully produced:
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc 934690835 Nov 26 08:51 shared/HITS.pool.root.1
[2025-11-26 08:54:54]  *** Contents of shared directory: ***
[2025-11-26 08:54:54] total 1326484
[2025-11-26 08:54:54] -rw-r--r--. 2 boinc boinc 408370113 Nov 25 07:31 ATLAS.root_0
[2025-11-26 08:54:54] -rw-r--r--. 2 boinc boinc     15847 Nov 25 07:31 start_atlas.sh
[2025-11-26 08:54:54] -rw-r--r--. 2 boinc boinc    590103 Nov 25 07:31 input.tar.gz
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc 934690835 Nov 26 08:51 HITS.pool.root.1
[2025-11-26 08:54:54] -rw-------. 1 boinc boinc  14643200 Nov 26 08:54 result.tar.gz
08:54:56 (20125): run_atlas exited; CPU time 344758.779722
08:54:56 (20125): called boinc_finish(0)

</stderr_txt>
]]>

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