Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 12:51:46 (12164): vboxwrapper version 26210
2025-11-23 12:51:46 (12164): BOINC client version: 7.24.1
2025-11-23 12:51:46 (12164): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-11-23 12:51:46 (12164): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 12:51:46 (12164): Create VM. (boinc_ba6bd662b289f79b, slot#0)
2025-11-23 12:51:46 (12164): Setting Memory Size for VM. (4800MB)
2025-11-23 12:51:46 (12164): Setting CPU Count for VM. (8)
2025-11-23 12:51:46 (12164): Setting Chipset Options for VM.
2025-11-23 12:51:47 (12164): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 12:51:47 (12164): Setting Boot Options for VM.
2025-11-23 12:51:47 (12164): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 12:51:47 (12164): Enabling VM Network Access.
2025-11-23 12:51:47 (12164): Disabling USB Support for VM.
2025-11-23 12:51:47 (12164): Disabling COM Port Support for VM.
2025-11-23 12:51:47 (12164): Disabling LPT Port Support for VM.
2025-11-23 12:51:47 (12164): Disabling Audio Support for VM.
2025-11-23 12:51:47 (12164): Disabling Clipboard Support for VM.
2025-11-23 12:51:47 (12164): Disabling Drag and Drop Support for VM.
2025-11-23 12:51:47 (12164): Adding storage controller(s) to VM.
2025-11-23 12:51:47 (12164): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 12:51:48 (12164): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 12:51:48 (12164): forwarding host port 37869 to guest port 80
2025-11-23 12:51:48 (12164): Enabling remote desktop for VM.
2025-11-23 12:51:48 (12164): Enabling shared directory for VM.
2025-11-23 12:51:48 (12164): Starting VM using VBoxManage interface. (boinc_ba6bd662b289f79b, slot#0)
2025-11-23 12:51:50 (12164): Successfully started VM. (PID = '12654')
2025-11-23 12:51:50 (12164): Reporting VM Process ID to BOINC.
2025-11-23 12:51:50 (12164): Guest Log: BIOS: VirtualBox 7.0.16
2025-11-23 12:51:50 (12164): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 12:51:50 (12164): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 12:51:50 (12164): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 12:51:50 (12164): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 12:51:50 (12164): Detected: Web Application Enabled (http://localhost:37869)
2025-11-23 12:51:50 (12164): Detected: Remote Desktop Enabled (localhost:57383)
2025-11-23 12:51:50 (12164): Preference change detected
2025-11-23 12:51:50 (12164): Setting CPU throttle for VM. (60%)
2025-11-23 12:51:50 (12164): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 12:51:52 (12164): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 12:51:52 (12164): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 12:51:55 (12164): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 12:51:55 (12164): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 12:51:55 (12164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 12:52:05 (12164): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 12:52:05 (12164): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-23 12:52:10 (12164): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 12:52:10 (12164): Guest Log: 00:00:00.000364 main     Log opened 2025-11-23T11:52:09.854219000Z
2025-11-23 12:52:10 (12164): Guest Log: 00:00:00.000586 main     OS Product: Linux
2025-11-23 12:52:10 (12164): Guest Log: 00:00:00.000678 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 12:52:10 (12164): Guest Log: 00:00:00.000733 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 12:52:10 (12164): Guest Log: 00:00:00.000787 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 12:52:10 (12164): Guest Log: 00:00:00.000789 main     Process ID: 1364
2025-11-23 12:52:10 (12164): Guest Log: 00:00:00.000790 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 12:52:10 (12164): Guest Log: 00:00:00.002540 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 12:52:10 (12164): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 12:52:10 (12164): Guest Log: [INFO] Mounting shared directory
2025-11-23 12:52:10 (12164): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 12:52:14 (12164): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 12:52:14 (12164): Guest Log: [INFO] Detected branch: prod
2025-11-23 12:52:14 (12164): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 12:52:14 (12164): Guest Log: Copying input files
2025-11-23 12:52:16 (12164): Guest Log: Copied input files into RunAtlas.
2025-11-23 12:52:16 (12164): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 12:52:16 (12164): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 12:52:16 (12164): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 12:52:16 (12164): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 12:52:26 (12164): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 12:52:26 (12164): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 12:52:26 (12164): Guest Log: 2.6.3.0 1639 0 30156 153207 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 12:52:27 (12164): Guest Log: copied the webapp to /var/www
2025-11-23 12:52:27 (12164): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-23 12:52:27 (12164): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-23 12:52:27 (12164): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 12:52:27 (12164): Guest Log:  *** Starting ATLAS job. (PandaID=6895340583 taskID=47556149) ***
2025-11-23 14:30:50 (12164): Status Report: Elapsed Time: '6000.000000'
2025-11-23 14:30:50 (12164): Status Report: CPU Time: '27190.400000'
2025-11-23 16:09:51 (12164): Status Report: Elapsed Time: '12000.000000'
2025-11-23 16:09:51 (12164): Status Report: CPU Time: '56034.190000'
2025-11-23 17:48:51 (12164): Status Report: Elapsed Time: '18000.000000'
2025-11-23 17:48:51 (12164): Status Report: CPU Time: '85030.140000'
2025-11-23 19:27:52 (12164): Status Report: Elapsed Time: '24000.000000'
2025-11-23 19:27:52 (12164): Status Report: CPU Time: '114053.830000'
2025-11-23 21:06:53 (12164): Status Report: Elapsed Time: '30000.000000'
2025-11-23 21:06:53 (12164): Status Report: CPU Time: '143058.290000'
2025-11-23 22:45:54 (12164): Status Report: Elapsed Time: '36000.000000'
2025-11-23 22:45:54 (12164): Status Report: CPU Time: '170719.420000'
2025-11-23 22:47:04 (12164): Guest Log:  *** Job finished ***
2025-11-23 22:47:04 (12164): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:46:35,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:46:35,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:46:55,721 | INFO     | [monitor] cgroup control has ended
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:46:56,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140603234322240)>', '<ExcThread(monitor, started 140602624681728)>']
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:46:57,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:46:57,244 | INFO     | [monitor] control thread has ended
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,736 | INFO     | all workflow threads have been joined
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,736 | INFO     | end of generic workflow (traces error code: 0)
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,737 | INFO     | traces error code: 0
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,854 [wrapper] ==== pilot stdout END ====
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,863 [wrapper] ==== wrapper stdout RESUME ====
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,870 [wrapper] pilotpid: 6058
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,877 [wrapper] Pilot exit status: 0
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,901 [wrapper] pandaids: 6895340583
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,944 [wrapper] cleanup supervisor_pilot  9637 6059
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,949 [wrapper] Test setup, not cleaning
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,956 [wrapper] apfmon messages muted
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,963 [wrapper] ==== wrapper stdout END ====
2025-11-23 22:47:04 (12164): Guest Log: 2025-11-23 21:47:01,972 [wrapper] ==== wrapper stderr END ====
2025-11-23 22:47:04 (12164): Guest Log:  *** Error codes and diagnostics ***
2025-11-23 22:47:04 (12164): Guest Log:     "exeErrorCode": 0,
2025-11-23 22:47:04 (12164): Guest Log:     "exeErrorDiag": "",
2025-11-23 22:47:04 (12164): Guest Log:     "pilotErrorCode": 0,
2025-11-23 22:47:04 (12164): Guest Log:     "pilotErrorDiag": "",
2025-11-23 22:47:04 (12164): Guest Log:  *** Listing of results directory ***
2025-11-23 22:47:04 (12164): Guest Log: total 900560
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 22 14:16 pilot3.tar.gz
2025-11-23 22:47:04 (12164): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 22 14:35 runpilot2-wrapper.sh
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 22 14:35 queuedata.json
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 23 11:52 start_atlas.sh
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 atlas atlas      6673 Nov 23 11:52 init_data.xml
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 atlas atlas    590108 Nov 23 11:52 input.tar.gz
2025-11-23 22:47:04 (12164): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 11:52 EVNT.47483658._001092.pool.root.1 -> /data/./ATLAS.root_0
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 23 11:52 pandaJob.out
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas    989784 Nov 23 11:53 agis_schedconf.cvmfs.json
2025-11-23 22:47:04 (12164): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 11:53 pilot3
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas 906324125 Nov 23 21:45 HITS.47556149._000785.pool.root.1
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas      1042 Nov 23 21:45 memory_monitor_summary.json
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 23 21:45 agis_ddmendpoints.agis.ALL.json
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas   1820266 Nov 23 21:45 log.47556149._000785.job.log.tgz.1
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas      8666 Nov 23 21:46 heartbeat.json
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas        95 Nov 23 21:46 pilot_heartbeat.json
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 23 21:47 pilotlog.txt
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas   4179095 Nov 23 21:47 log.47556149._000785.job.log.1
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas       353 Nov 23 21:47 output.list
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 23 21:47 runtime_log
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas   6021120 Nov 23 21:47 result.tar.gz
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 atlas atlas      8750 Nov 23 21:47 runtime_log.err
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas       662 Nov 23 21:47 kSjMDmms3g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmP8HKDmQblMLn.diag
2025-11-23 22:47:04 (12164): Guest Log: Looking for outputfile HITS.47556149._000785.pool.root.1
2025-11-23 22:47:04 (12164): Guest Log: HITS file was successfully produced
2025-11-23 22:47:04 (12164): Guest Log: -rw-------. 1 atlas atlas 906324125 Nov 23 21:45 /home/atlas/RunAtlas/HITS.47556149._000785.pool.root.1
2025-11-23 22:47:04 (12164): Guest Log: Successfully finished the ATLAS job!
2025-11-23 22:47:04 (12164): Guest Log: Copying the results back to the shared directory!
2025-11-23 22:47:04 (12164): Guest Log:  *** Contents of shared directory: ***
2025-11-23 22:47:04 (12164): Guest Log: total 403632
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 root root 406675112 Nov 23 11:51 ATLAS.root_0
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 root root      6673 Nov 23 11:51 init_data.xml
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 root root    590108 Nov 23 11:51 input.tar.gz
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 root root   6021120 Nov 23 21:47 result.tar.gz
2025-11-23 22:47:04 (12164): Guest Log: -rw-r--r--. 1 root root     15847 Nov 23 11:51 start_atlas.sh
2025-11-23 22:47:04 (12164): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-23 22:47:04 (12164): VM Completion File Detected.
2025-11-23 22:47:04 (12164): Powering off VM.
2025-11-23 22:47:04 (12164): Successfully stopped VM.
2025-11-23 22:47:04 (12164): Deregistering VM. (boinc_ba6bd662b289f79b, slot#0)
2025-11-23 22:47:04 (12164): Removing network bandwidth throttle group from VM.
2025-11-23 22:47:04 (12164): Removing VM from VirtualBox.
2025-11-23 22:47:09 (12164): called boinc_finish(0)

</stderr_txt>
]]>

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