Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:44:33 (2324196): wrapper (7.7.26015): starting
20:44:33 (2324196): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 20:44:33] Arguments: --nthreads 4
[2025-11-25 20:44:33] Threads: 4
[2025-11-25 20:44:33] Checking for CVMFS
[2025-11-25 20:44:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:44:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:44:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:44:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:44:33] 2.9.2.0 849437 10215 109920 153295 0 81 31454939 36864001 0 130560 1 4081929 99.931 530944 837 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 20:44:33] CVMFS is ok
[2025-11-25 20:44:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:44:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:44:33] Further information can be found at the LHC@home message board.
[2025-11-25 20:44:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:44:33] Checking for apptainer binary...
[2025-11-25 20:44:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:44:33] Running /usr/bin/apptainer --version
[2025-11-25 20:44:33] apptainer version 1.4.1-1.1
[2025-11-25 20:44:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:44:33] iaxoA393
[2025-11-25 20:44:33] apptainer works
[2025-11-25 20:44:33] Set ATHENA_PROC_NUMBER=4
[2025-11-25 20:44:33] Set ATHENA_CORE_NUMBER=4
[2025-11-25 20:44:33] Starting ATLAS job with PandaID=6895340840
[2025-11-25 20:44:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:36:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:36:27] 2025-11-26 02:35:55,746 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:36:27] 2025-11-26 02:35:55,746 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:36:27] 2025-11-26 02:35:55,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:36:27] 2025-11-26 02:35:55,746 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:36:27] 2025-11-26 02:35:55,746 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:36:27] 2025-11-26 02:35:55,746 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:36:27] 2025-11-26 02:35:55,746 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:36:27] 2025-11-26 02:35:55,746 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:36:27] 2025-11-26 02:35:55,746 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:36:27] 2025-11-26 02:35:55,747 | INFO     | job 6895340840 has completed (purged errors)
[2025-11-26 03:36:27] 2025-11-26 02:35:55,747 | INFO     | overall cleanup function is called
[2025-11-26 03:36:27] 2025-11-26 02:35:56,756 | INFO     | --- collectZombieJob: --- 10, [2334568]
[2025-11-26 03:36:27] 2025-11-26 02:35:56,756 | INFO     | zombie collector waiting for pid 2334568
[2025-11-26 03:36:27] 2025-11-26 02:35:56,756 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:36:27] 2025-11-26 02:35:56,756 | INFO     | collected zombie processes
[2025-11-26 03:36:27] 2025-11-26 02:35:56,756 | INFO     | will attempt to kill all subprocesses of pid=2334568
[2025-11-26 03:36:27] 2025-11-26 02:35:56,800 | INFO     | process IDs to be killed: [2334568] (in reverse order)
[2025-11-26 03:36:27] 2025-11-26 02:35:56,831 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:36:27] 2025-11-26 02:35:56,831 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:36:27] 2025-11-26 02:35:56,833 | INFO     | did not find any defunct processes belonging to 2334568
[2025-11-26 03:36:27] 2025-11-26 02:35:56,834 | INFO     | did not find any defunct processes belonging to 2334568
[2025-11-26 03:36:27] 2025-11-26 02:35:56,835 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:36:27] 2025-11-26 02:35:56,835 | INFO     | ready for new job
[2025-11-26 03:36:27] 2025-11-26 02:35:56,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:36:27] 2025-11-26 02:35:56,836 | INFO     | ***************************************
[2025-11-26 03:36:27] 2025-11-26 02:35:56,836 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:36:27] 2025-11-26 02:35:56,836 | INFO     | ***************************************
[2025-11-26 03:36:27] 2025-11-26 02:35:56,836 | INFO     | 
[2025-11-26 03:36:27] 2025-11-26 02:35:56,837 | INFO     | architecture information:
[2025-11-26 03:36:27] 2025-11-26 02:35:56,837 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:36:27] 2025-11-26 02:35:56,850 | INFO     | cat /etc/os-release:
[2025-11-26 03:36:27] NAME="CentOS Linux"
[2025-11-26 03:36:27] VERSION="7 (Core)"
[2025-11-26 03:36:27] ID="centos"
[2025-11-26 03:36:27] ID_LIKE="rhel fedora"
[2025-11-26 03:36:27] VERSION_ID="7"
[2025-11-26 03:36:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:36:27] ANSI_COLOR="0;31"
[2025-11-26 03:36:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:36:27] HOME_URL="https://www.centos.org/"
[2025-11-26 03:36:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:36:27] 
[2025-11-26 03:36:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:36:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:36:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:36:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:36:27] 
[2025-11-26 03:36:27] 2025-11-26 02:35:56,850 | INFO     | ***************************************
[2025-11-26 03:36:27] 2025-11-26 02:35:57,353 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 03:36:27] 2025-11-26 02:35:57,369 | INFO     | sufficient remaining disk space (325164466176 B)
[2025-11-26 03:36:27] 2025-11-26 02:35:57,370 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:36:27] 2025-11-26 02:35:57,370 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:36:27] 2025-11-26 02:35:57,370 | INFO     | update_server=False
[2025-11-26 03:36:27] 2025-11-26 02:35:57,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:36:27] 2025-11-26 02:35:57,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:36:27] 2025-11-26 02:35:57,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:36:27] 2025-11-26 02:35:57,595 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 03:36:27] 2025-11-26 02:35:57,595 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 03:36:27] 2025-11-26 02:35:57,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:36:27] 2025-11-26 02:35:57,595 | INFO     | will abort loop
[2025-11-26 03:36:27] 2025-11-26 02:35:57,782 | INFO     | all job control threads have been joined
[2025-11-26 03:36:27] 2025-11-26 02:35:57,973 | INFO     | all data control threads have been joined
[2025-11-26 03:36:27] 2025-11-26 02:35:58,304 | INFO     | all payload control threads have been joined
[2025-11-26 03:36:27] 2025-11-26 02:35:58,374 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:58,374 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:58,395 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:36:27] 2025-11-26 02:35:58,517 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:58,601 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:58,758 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:58,788 | INFO     | [job] control thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:58,979 | INFO     | [data] control thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:59,004 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:59,223 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:59,305 | INFO     | [payload] control thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:59,628 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:59,768 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:59,775 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:35:59,877 | INFO     | [job] validate thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:36:00,402 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:36:01,377 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:36:27] 2025-11-26 02:36:12,545 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:36:27] 2025-11-26 02:36:13,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140332580095808)>', '<ExcThread(monitor, started 140331764913920)>']
[2025-11-26 03:36:27] 2025-11-26 02:36:18,798 | INFO     | all workflow threads have been joined
[2025-11-26 03:36:27] 2025-11-26 02:36:18,798 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:36:27] 2025-11-26 02:36:18,799 | INFO     | traces error code: 0
[2025-11-26 03:36:27] 2025-11-26 02:36:18,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:36:27] 2025-11-26 02:36:27,081 | INFO     | PID=2328005 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 03:36:27] 2025-11-26 02:36:27,081 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:36:27] 2025-11-26 02:36:27,081 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:36:27] 2025-11-26 02:36:27,081 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:36:27] 2025-11-26 02:36:27,081 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:36:27] 2025-11-26 02:36:27,081 | INFO     | [monitor] control thread has ended
[2025-11-26 03:36:27] 2025-11-26 02:36:27,146 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:36:27] 2025-11-26 02:36:27,149 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:36:27] 2025-11-26 02:36:27,153 [wrapper] pilotpid: 2328005
[2025-11-26 03:36:27] 2025-11-26 02:36:27,157 [wrapper] Pilot exit status: 0
[2025-11-26 03:36:27] 2025-11-26 02:36:27,168 [wrapper] pandaids: 6895340840
[2025-11-26 03:36:27] 2025-11-26 02:36:27,189 [wrapper] cleanup supervisor_pilot 2380680 2328006
[2025-11-26 03:36:27] 2025-11-26 02:36:27,193 [wrapper] Test setup, not cleaning
[2025-11-26 03:36:27] 2025-11-26 02:36:27,197 [wrapper] apfmon messages muted
[2025-11-26 03:36:27] 2025-11-26 02:36:27,200 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:36:27] 2025-11-26 02:36:27,204 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:36:27]  *** Error codes and diagnostics ***
[2025-11-26 03:36:27]     "exeErrorCode": 0,
[2025-11-26 03:36:27]     "exeErrorDiag": "",
[2025-11-26 03:36:27]     "pilotErrorCode": 0,
[2025-11-26 03:36:27]     "pilotErrorDiag": "",
[2025-11-26 03:36:27]  *** Listing of results directory ***
[2025-11-26 03:36:27] total 1322268
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc    576529 Nov 22 15:16 pilot3.tar.gz
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc      5112 Nov 22 15:35 queuedata.json
[2025-11-26 03:36:27] -rwx------ 1 boinc boinc     36292 Nov 22 15:37 runpilot2-wrapper.sh
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc       100 Nov 25 20:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:36:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 20:44 run_atlas
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc       105 Nov 25 20:44 job.xml
[2025-11-26 03:36:27] -rw-r--r-- 2 boinc boinc 410112742 Nov 25 20:44 EVNT.47483658._000394.pool.root.1
[2025-11-26 03:36:27] -rw-r--r-- 2 boinc boinc    590103 Nov 25 20:44 input.tar.gz
[2025-11-26 03:36:27] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:44 start_atlas.sh
[2025-11-26 03:36:27] drwxrwx--x 2 boinc boinc      4096 Nov 25 20:44 shared
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:44 boinc_setup_complete
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc      6373 Nov 25 20:44 init_data.xml
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:44 boinc_lockfile
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc      2784 Nov 25 20:44 pandaJob.out
[2025-11-26 03:36:27] -rw------- 1 boinc boinc    991893 Nov 25 20:44 agis_schedconf.cvmfs.json
[2025-11-26 03:36:27] drwx------ 5 boinc boinc      4096 Nov 25 20:44 pilot3
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc       531 Nov 26 03:31 boinc_task_state.xml
[2025-11-26 03:36:27] -rw------- 1 boinc boinc 930517756 Nov 26 03:35 HITS.47556137._003897.pool.root.1
[2025-11-26 03:36:27] -rw------- 1 boinc boinc      1032 Nov 26 03:35 memory_monitor_summary.json
[2025-11-26 03:36:27] -rw------- 1 boinc boinc   1516240 Nov 26 03:35 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:36:27] -rw------- 1 boinc boinc   1255466 Nov 26 03:35 log.47556137._003897.job.log.tgz.1
[2025-11-26 03:36:27] -rw------- 1 boinc boinc        95 Nov 26 03:35 pilot_heartbeat.json
[2025-11-26 03:36:27] -rw------- 1 boinc boinc      8574 Nov 26 03:35 heartbeat.json
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc      8192 Nov 26 03:36 boinc_mmap_file
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc        28 Nov 26 03:36 wrapper_checkpoint.txt
[2025-11-26 03:36:27] -rw------- 1 boinc boinc       747 Nov 26 03:36 pilotlog.txt
[2025-11-26 03:36:27] -rw------- 1 boinc boinc   3480869 Nov 26 03:36 log.47556137._003897.job.log.1
[2025-11-26 03:36:27] -rw------- 1 boinc boinc       353 Nov 26 03:36 output.list
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc       620 Nov 26 03:36 runtime_log
[2025-11-26 03:36:27] -rw------- 1 boinc boinc   4751360 Nov 26 03:36 result.tar.gz
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc      8908 Nov 26 03:36 runtime_log.err
[2025-11-26 03:36:27] -rw------- 1 boinc boinc       667 Nov 26 03:36 keeLDmru3g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcCKKDmDMeBZn.diag
[2025-11-26 03:36:27] -rw-r--r-- 1 boinc boinc     12180 Nov 26 03:36 stderr.txt
[2025-11-26 03:36:27] HITS file was successfully produced:
[2025-11-26 03:36:27] -rw------- 1 boinc boinc 930517756 Nov 26 03:35 shared/HITS.pool.root.1
[2025-11-26 03:36:27]  *** Contents of shared directory: ***
[2025-11-26 03:36:27] total 1314460
[2025-11-26 03:36:27] -rw-r--r-- 2 boinc boinc 410112742 Nov 25 20:44 ATLAS.root_0
[2025-11-26 03:36:27] -rw-r--r-- 2 boinc boinc    590103 Nov 25 20:44 input.tar.gz
[2025-11-26 03:36:27] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:44 start_atlas.sh
[2025-11-26 03:36:27] -rw------- 1 boinc boinc 930517756 Nov 26 03:35 HITS.pool.root.1
[2025-11-26 03:36:27] -rw------- 1 boinc boinc   4751360 Nov 26 03:36 result.tar.gz
03:36:49 (2324196): run_atlas exited; CPU time 96496.907210
03:36:49 (2324196): called boinc_finish(0)

</stderr_txt>
]]>

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