Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:02:28 (28612): wrapper (7.7.26015): starting
07:02:28 (28612): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 07:02:28] Arguments: --nthreads 8
[2025-11-26 07:02:28] Threads: 8
[2025-11-26 07:02:28] Checking for CVMFS
[2025-11-26 07:02:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 07:02:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 07:02:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 07:02:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 07:02:30] 2.11.2.0 3740 284968 141548 153311 2 85 24096211 25165824 2960 130560 10 132200076 99.874 79191327 2849 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 07:02:30] CVMFS is ok
[2025-11-26 07:02:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:02:30] Checking for apptainer binary...
[2025-11-26 07:02:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 07:02:30] Running /usr/bin/apptainer --version
[2025-11-26 07:02:30] apptainer version 1.3.2-1.el7
[2025-11-26 07:02:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:02:47] cg-vwn234.simple-grid.lan
[2025-11-26 07:02:47] apptainer works
[2025-11-26 07:02:47] Set ATHENA_PROC_NUMBER=8
[2025-11-26 07:02:47] Set ATHENA_CORE_NUMBER=8
[2025-11-26 07:02:47] Starting ATLAS job with PandaID=6895340375
[2025-11-26 07:02:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:46:25]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:46:26] 2025-11-27 06:45:39,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:46:26] 2025-11-27 06:45:40,790 | INFO     | time since job start (88740s) is within the limit (172800.0s)
[2025-11-27 07:46:26] 2025-11-27 06:45:42,188 | INFO     | monitor loop #5977: job 0:6895340375 is in state 'finished'
[2025-11-27 07:46:26] 2025-11-27 06:45:42,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:46:26] 2025-11-27 06:45:42,797 | INFO     | time since job start (88742s) is within the limit (172800.0s)
[2025-11-27 07:46:26] 2025-11-27 06:45:44,702 | INFO     | monitor loop #5978: job 0:6895340375 is in state 'finished'
[2025-11-27 07:46:26] 2025-11-27 06:45:44,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:46:26] 2025-11-27 06:45:44,803 | INFO     | time since job start (88744s) is within the limit (172800.0s)
[2025-11-27 07:46:26] 2025-11-27 06:45:46,005 | INFO     | PID=32416 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 07:46:26] 2025-11-27 06:45:46,005 | INFO     | .. there are 9 such processes running
[2025-11-27 07:46:26] 2025-11-27 06:45:47,006 | INFO     | time since job start (88747s) is within the limit (172800.0s)
[2025-11-27 07:46:26] 2025-11-27 06:45:47,207 | INFO     | monitor loop #5979: job 0:6895340375 is in state 'finished'
[2025-11-27 07:46:26] 2025-11-27 06:45:47,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:46:26] 2025-11-27 06:45:49,013 | INFO     | time since job start (88749s) is within the limit (172800.0s)
[2025-11-27 07:46:26] 2025-11-27 06:45:49,711 | INFO     | monitor loop #5980: job 0:6895340375 is in state 'finished'
[2025-11-27 07:46:26] 2025-11-27 06:45:49,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:46:26] 2025-11-27 06:45:49,858 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 07:46:26] 2025-11-27 06:45:49,859 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 07:46:26] 2025-11-27 06:45:49,861 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6895340375/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:46:26] 2025-11-27 06:45:49,861 | INFO     | extracted standard info from prmon json
[2025-11-27 07:46:26] 2025-11-27 06:45:49,862 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:46:26] 2025-11-27 06:45:49,862 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:46:26] 2025-11-27 06:45:49,888 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:46:26] 2025-11-27 06:45:49,890 | INFO     | sum of square deviations: 935579604943.2006
[2025-11-27 07:46:26] 2025-11-27 06:45:49,955 | INFO     | sum of deviations: 3419483566925.1025
[2025-11-27 07:46:26] 2025-11-27 06:45:49,956 | INFO     | mean x: 1764181782.0941176
[2025-11-27 07:46:26] 2025-11-27 06:45:49,956 | INFO     | mean y: 2836830.6242214534
[2025-11-27 07:46:26] 2025-11-27 06:45:49,956 | INFO     | intersect: -6445134652.578128
[2025-11-27 07:46:26] 2025-11-27 06:45:49,958 | INFO     | chi2: 25.557552428920655
[2025-11-27 07:46:26] 2025-11-27 06:45:49,960 | INFO     | sum of square deviations: 925901728932.194
[2025-11-27 07:46:26] 2025-11-27 06:45:50,027 | INFO     | sum of deviations: 3898235128017.668
[2025-11-27 07:46:26] 2025-11-27 06:45:50,027 | INFO     | mean x: 1764181629.5979166
[2025-11-27 07:46:26] 2025-11-27 06:45:50,027 | INFO     | mean y: 2844373.888888889
[2025-11-27 07:46:26] 2025-11-27 06:45:50,027 | INFO     | intersect: -7424720113.579182
[2025-11-27 07:46:26] 2025-11-27 06:45:50,029 | INFO     | chi2: 22.308123400889297
[2025-11-27 07:46:26] 2025-11-27 06:45:50,029 | INFO     | current chi2=22.308123400889297 (change=12.714163600244985 %)
[2025-11-27 07:46:26] 2025-11-27 06:45:50,029 | INFO     | right removable region: 1439
[2025-11-27 07:46:26] 2025-11-27 06:45:50,031 | INFO     | sum of square deviations: 925900764522.1938
[2025-11-27 07:46:26] 2025-11-27 06:45:50,104 | INFO     | sum of deviations: 2805029581863.1196
[2025-11-27 07:46:26] 2025-11-27 06:45:50,104 | INFO     | mean x: 1764181934.5979166
[2025-11-27 07:46:26] 2025-11-27 06:45:50,104 | INFO     | mean y: 2846511.839583333
[2025-11-27 07:46:26] 2025-11-27 06:45:50,105 | INFO     | intersect: -5341767839.882389
[2025-11-27 07:46:26] 2025-11-27 06:45:50,106 | INFO     | chi2: 20.698051663521124
[2025-11-27 07:46:26] 2025-11-27 06:45:50,106 | INFO     | current chi2=20.698051663521124 (change=19.013952055520665 %)
[2025-11-27 07:46:26] 2025-11-27 06:45:50,107 | INFO     | left removable region: 10
[2025-11-27 07:46:26] 2025-11-27 06:45:50,109 | INFO     | sum of square deviations: 904843907999.8307
[2025-11-27 07:46:26] 2025-11-27 06:45:50,175 | INFO     | sum of deviations: 2895643679016.6294
[2025-11-27 07:46:26] 2025-11-27 06:45:50,175 | INFO     | mean x: 1764181904.106368
[2025-11-27 07:46:26] 2025-11-27 06:45:50,176 | INFO     | mean y: 2863636.634009797
[2025-11-27 07:46:26] 2025-11-27 06:45:50,176 | INFO     | intersect: -5642797602.942001
[2025-11-27 07:46:26] 2025-11-27 06:45:50,177 | INFO     | chi2: 13.639110626139962
[2025-11-27 07:46:26] 2025-11-27 06:45:50,178 | INFO     | current memory leak: 3.20 B/s (using 1429 data points, chi2=13.64)
[2025-11-27 07:46:26] 2025-11-27 06:45:50,179 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-27 07:46:26] 2025-11-27 06:45:50,179 | INFO     | ..............................
[2025-11-27 07:46:26] 2025-11-27 06:45:50,179 | INFO     | . Timing measurements:
[2025-11-27 07:46:26] 2025-11-27 06:45:50,179 | INFO     | . get job = 0 s
[2025-11-27 07:46:26] 2025-11-27 06:45:50,179 | INFO     | . initial setup = 6 s
[2025-11-27 07:46:26] 2025-11-27 06:45:50,180 | INFO     | . payload setup = 173 s
[2025-11-27 07:46:26] 2025-11-27 06:45:50,180 | INFO     | . stage-in = 0 s
[2025-11-27 07:46:26] 2025-11-27 06:45:50,180 | INFO     | . payload execution = 88280 s
[2025-11-27 07:46:26] 2025-11-27 06:45:50,180 | INFO     | . stage-out = 5 s
[2025-11-27 07:46:26] 2025-11-27 06:45:50,180 | INFO     | . log creation = 1 s
[2025-11-27 07:46:26] 2025-11-27 06:45:50,180 | INFO     | ..............................
[2025-11-27 07:46:26] 2025-11-27 06:45:50,289 | INFO     | 
[2025-11-27 07:46:26] 2025-11-27 06:45:50,289 | INFO     | job summary report
[2025-11-27 07:46:26] 2025-11-27 06:45:50,289 | INFO     | --------------------------------------------------
[2025-11-27 07:46:26] 2025-11-27 06:45:50,289 | INFO     | PanDA job id: 6895340375
[2025-11-27 07:46:26] 2025-11-27 06:45:50,289 | INFO     | task id: 47556149
[2025-11-27 07:46:26] 2025-11-27 06:45:50,289 | INFO     | errors: (none)
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | pilot state: finished 
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | transexitcode: 0
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | exeerrorcode: 0
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | exeerrordiag: 
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | exitcode: 0
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | exitmsg: OK
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | cpuconsumptiontime: 332292 s
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | nevents: 1000
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | neventsw: 0
[2025-11-27 07:46:26] 2025-11-27 06:45:50,290 | INFO     | pid: 6625
[2025-11-27 07:46:26] 2025-11-27 06:45:50,291 | INFO     | pgrp: 6625
[2025-11-27 07:46:26] 2025-11-27 06:45:50,291 | INFO     | corecount: 8
[2025-11-27 07:46:26] 2025-11-27 06:45:50,291 | INFO     | event service: False
[2025-11-27 07:46:26] 2025-11-27 06:45:50,291 | INFO     | sizes: {0: 2283484, 1: 2284170, 2: 2284369, 13: 2284369, 23: 2284425, 34: 2284453, 45: 2284609, 56: 2284637, 66: 2284665, 77: 2284693, 88: 2284749, 91: 2285319, 98
[2025-11-27 07:46:26] 2025-11-27 06:45:50,291 | INFO     | --------------------------------------------------
[2025-11-27 07:46:26] 2025-11-27 06:45:50,291 | INFO     | 
[2025-11-27 07:46:26] 2025-11-27 06:45:50,291 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-11-27 07:46:26] 2025-11-27 06:45:50,819 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,820 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,820 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,820 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,820 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,820 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,820 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,820 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,821 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,821 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,821 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,821 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,821 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,821 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,821 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,822 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:46:26] 2025-11-27 06:45:50,822 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,822 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:46:26] 2025-11-27 06:45:50,822 | INFO     | job 6895340375 has completed (purged errors)
[2025-11-27 07:46:26] 2025-11-27 06:45:50,822 | INFO     | overall cleanup function is called
[2025-11-27 07:46:26] 2025-11-27 06:45:51,848 | INFO     | --- collectZombieJob: --- 10, [6625]
[2025-11-27 07:46:26] 2025-11-27 06:45:51,848 | INFO     | zombie collector waiting for pid 6625
[2025-11-27 07:46:26] 2025-11-27 06:45:51,848 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:46:26] 2025-11-27 06:45:51,848 | INFO     | collected zombie processes
[2025-11-27 07:46:26] 2025-11-27 06:45:51,848 | INFO     | will attempt to kill all subprocesses of pid=6625
[2025-11-27 07:46:26] 2025-11-27 06:45:51,984 | INFO     | process IDs to be killed: [6625] (in reverse order)
[2025-11-27 07:46:26] 2025-11-27 06:45:52,833 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:46:26] 2025-11-27 06:45:52,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:46:26] 2025-11-27 06:45:52,836 | INFO     | did not find any defunct processes belonging to 6625
[2025-11-27 07:46:26] 2025-11-27 06:45:52,839 | INFO     | did not find any defunct processes belonging to 6625
[2025-11-27 07:46:26] 2025-11-27 06:45:52,882 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:46:26] 2025-11-27 06:45:52,882 | INFO     | ready for new job
[2025-11-27 07:46:26] 2025-11-27 06:45:52,882 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:46:26] 2025-11-27 06:45:52,889 | INFO     | ***************************************
[2025-11-27 07:46:26] 2025-11-27 06:45:52,889 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:46:26] 2025-11-27 06:45:52,889 | INFO     | ***************************************
[2025-11-27 07:46:26] 2025-11-27 06:45:52,889 | INFO     | 
[2025-11-27 07:46:26] 2025-11-27 06:45:52,889 | INFO     | pilot is running in a VM
[2025-11-27 07:46:26] 2025-11-27 06:45:52,893 | INFO     | architecture information:
[2025-11-27 07:46:26] 2025-11-27 06:45:52,918 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:46:26] 2025-11-27 06:45:53,183 | INFO     | cat /etc/os-release:
[2025-11-27 07:46:26] NAME="CentOS Linux"
[2025-11-27 07:46:26] VERSION="7 (Core)"
[2025-11-27 07:46:26] ID="centos"
[2025-11-27 07:46:26] ID_LIKE="rhel fedora"
[2025-11-27 07:46:26] VERSION_ID="7"
[2025-11-27 07:46:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:46:26] ANSI_COLOR="0;31"
[2025-11-27 07:46:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:46:26] HOME_URL="https://www.centos.org/"
[2025-11-27 07:46:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:46:26] 
[2025-11-27 07:46:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:46:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:46:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:46:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:46:26] 
[2025-11-27 07:46:26] 2025-11-27 06:45:53,183 | INFO     | ***************************************
[2025-11-27 07:46:26] 2025-11-27 06:45:53,687 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-11-27 07:46:26] 2025-11-27 06:45:53,873 | INFO     | sufficient remaining disk space (495438528512 B)
[2025-11-27 07:46:26] 2025-11-27 06:45:53,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:46:26] 2025-11-27 06:45:53,873 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:46:26] 2025-11-27 06:45:53,873 | INFO     | update_server=False
[2025-11-27 07:46:26] 2025-11-27 06:45:53,874 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:46:26] 2025-11-27 06:45:53,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:46:26] 2025-11-27 06:45:53,874 | INFO     | aborting loop
[2025-11-27 07:46:26] 2025-11-27 06:45:53,875 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:46:26] 2025-11-27 06:45:53,976 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:46:26] 2025-11-27 06:45:54,011 | INFO     | all data control threads have been joined
[2025-11-27 07:46:26] 2025-11-27 06:45:54,857 | INFO     | all job control threads have been joined
[2025-11-27 07:46:26] 2025-11-27 06:45:54,880 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:54,881 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:54,917 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,017 | INFO     | [data] control thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,035 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,060 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,086 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,307 | INFO     | all payload control threads have been joined
[2025-11-27 07:46:26] 2025-11-27 06:45:55,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:46:26] 2025-11-27 06:45:55,439 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,466 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,504 | INFO     | [job] validate thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,664 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,863 | INFO     | [job] control thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:55,882 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:56,313 | INFO     | [payload] control thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:56,313 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:45:57,985 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:46:26] 2025-11-27 06:46:15,436 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:46:26] 2025-11-27 06:46:16,762 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140036230952768)>', '<ExcThread(monitor, started 140035613497088)>']
[2025-11-27 07:46:26] 2025-11-27 06:46:21,788 | INFO     | all workflow threads have been joined
[2025-11-27 07:46:26] 2025-11-27 06:46:21,788 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:46:26] 2025-11-27 06:46:21,788 | INFO     | traces error code: 0
[2025-11-27 07:46:26] 2025-11-27 06:46:21,789 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:46:26] 2025-11-27 06:46:22,199 | INFO     | PID=32416 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 07:46:26] 2025-11-27 06:46:22,199 | INFO     | .. there are 9 such processes running
[2025-11-27 07:46:26] 2025-11-27 06:46:22,200 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:46:26] 2025-11-27 06:46:22,200 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:46:26] 2025-11-27 06:46:22,200 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:46:26] 2025-11-27 06:46:22,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:46:26] 2025-11-27 06:46:22,200 | INFO     | [monitor] control thread has ended
[2025-11-27 07:46:26] 2025-11-27 06:46:22,369 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:46:26] 2025-11-27 06:46:22,374 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:46:26] 2025-11-27 06:46:22,377 [wrapper] pilotpid: 32416
[2025-11-27 07:46:26] 2025-11-27 06:46:22,380 [wrapper] Pilot exit status: 0
[2025-11-27 07:46:26] 2025-11-27 06:46:22,411 [wrapper] pandaids: 6895340375
[2025-11-27 07:46:26] 2025-11-27 06:46:22,588 [wrapper] cleanup supervisor_pilot  2026 32417
[2025-11-27 07:46:26] 2025-11-27 06:46:22,719 [wrapper] Test setup, not cleaning
[2025-11-27 07:46:26] 2025-11-27 06:46:22,803 [wrapper] apfmon messages muted
[2025-11-27 07:46:26] 2025-11-27 06:46:22,927 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:46:26] 2025-11-27 06:46:22,977 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:46:26]  *** Error codes and diagnostics ***
[2025-11-27 07:46:26]     "exeErrorCode": 0,
[2025-11-27 07:46:26]     "exeErrorDiag": "",
[2025-11-27 07:46:26]     "pilotErrorCode": 0,
[2025-11-27 07:46:26]     "pilotErrorDiag": "",
[2025-11-27 07:46:26]  *** Listing of results directory ***
[2025-11-27 07:46:26] total 1350932
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc    576529 Nov 22 13:54 pilot3.tar.gz
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc      5112 Nov 22 14:12 queuedata.json
[2025-11-27 07:46:26] -rwx------. 1 boinc boinc     36292 Nov 22 14:15 runpilot2-wrapper.sh
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc       100 Nov 26 07:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:46:26] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 07:02 run_atlas
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc       105 Nov 26 07:02 job.xml
[2025-11-27 07:46:26] -rw-r--r--. 2 boinc boinc 410744127 Nov 26 07:02 EVNT.47483658._001090.pool.root.1
[2025-11-27 07:46:26] drwxrwx--x. 2 boinc boinc        68 Nov 26 07:02 shared
[2025-11-27 07:46:26] -rw-r--r--. 2 boinc boinc    590104 Nov 26 07:02 input.tar.gz
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc      6393 Nov 26 07:02 init_data.xml
[2025-11-27 07:46:26] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:02 start_atlas.sh
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc         0 Nov 26 07:02 boinc_lockfile
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc      2784 Nov 26 07:02 pandaJob.out
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc    991877 Nov 26 07:06 agis_schedconf.cvmfs.json
[2025-11-27 07:46:26] drwx------. 5 boinc boinc      4096 Nov 26 07:06 pilot3
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc       533 Nov 27 07:19 boinc_task_state.xml
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc 939998487 Nov 27 07:43 HITS.47556149._000767.pool.root.1
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc      1029 Nov 27 07:44 memory_monitor_summary.json
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc   1516240 Nov 27 07:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc   2519974 Nov 27 07:44 log.47556149._000767.job.log.tgz.1
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc      8626 Nov 27 07:45 heartbeat.json
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc      8192 Nov 27 07:46 boinc_mmap_file
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc        29 Nov 27 07:46 wrapper_checkpoint.txt
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc       820 Nov 27 07:46 pilotlog.txt
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc        95 Nov 27 07:46 pilot_heartbeat.json
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc  11832355 Nov 27 07:46 log.47556149._000767.job.log.1
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc       353 Nov 27 07:46 output.list
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc       620 Nov 27 07:46 runtime_log
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc  14376960 Nov 27 07:46 result.tar.gz
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc      8833 Nov 27 07:46 runtime_log.err
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc       662 Nov 27 07:46 EfZMDmcd2g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWBKKDmAQdABo.diag
[2025-11-27 07:46:26] -rw-r--r--. 1 boinc boinc     21459 Nov 27 07:46 stderr.txt
[2025-11-27 07:46:26] HITS file was successfully produced:
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc 939998487 Nov 27 07:43 shared/HITS.pool.root.1
[2025-11-27 07:46:26]  *** Contents of shared directory: ***
[2025-11-27 07:46:26] total 1333724
[2025-11-27 07:46:26] -rw-r--r--. 2 boinc boinc 410744127 Nov 26 07:02 ATLAS.root_0
[2025-11-27 07:46:26] -rw-r--r--. 2 boinc boinc    590104 Nov 26 07:02 input.tar.gz
[2025-11-27 07:46:26] -rw-r--r--. 2 boinc boinc     15847 Nov 26 07:02 start_atlas.sh
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc 939998487 Nov 27 07:43 HITS.pool.root.1
[2025-11-27 07:46:26] -rw-------. 1 boinc boinc  14376960 Nov 27 07:46 result.tar.gz
07:46:27 (28612): run_atlas exited; CPU time 332934.337717
07:46:27 (28612): called boinc_finish(0)

</stderr_txt>
]]>

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