Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:58:22 (26411): wrapper (7.7.26015): starting
05:58:22 (26411): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 05:58:22] Arguments: --nthreads 8
[2025-11-26 05:58:22] Threads: 8
[2025-11-26 05:58:22] Checking for CVMFS
[2025-11-26 05:58:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 05:58:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 05:58:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 05:58:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 05:58:25] 2.11.2.0 20118 284771 138588 153309 2 85 18595747 25165825 4632 130560 10 126060417 99.868 77302200 2496 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 05:58:25] CVMFS is ok
[2025-11-26 05:58:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 05:58:25] Checking for apptainer binary...
[2025-11-26 05:58:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 05:58:25] Running /usr/bin/apptainer --version
[2025-11-26 05:58:25] apptainer version 1.3.2-1.el7
[2025-11-26 05:58:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 05:58:32] cg-vwn344.simple-grid.lan
[2025-11-26 05:58:32] apptainer works
[2025-11-26 05:58:32] Set ATHENA_PROC_NUMBER=8
[2025-11-26 05:58:32] Set ATHENA_CORE_NUMBER=8
[2025-11-26 05:58:32] Starting ATLAS job with PandaID=6886145729
[2025-11-26 05:58:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:56:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:56:55] 2025-11-26 19:55:59,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-26 19:55:59,804 | INFO     | time since job start (53626s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-26 19:56:01,601 | INFO     | monitor loop #3720: job 0:6886145729 is in state 'finished'
[2025-11-26 20:56:55] 2025-11-26 19:56:01,601 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-26 19:56:01,811 | INFO     | time since job start (53628s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-26 19:56:03,822 | INFO     | time since job start (53630s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-26 19:56:04,107 | INFO     | monitor loop #3721: job 0:6886145729 is in state 'finished'
[2025-11-26 20:56:55] 2025-11-26 19:56:04,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-26 19:56:05,829 | INFO     | time since job start (53632s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-26 19:56:06,615 | INFO     | monitor loop #3722: job 0:6886145729 is in state 'finished'
[2025-11-26 20:56:55] 2025-11-26 19:56:06,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-26 19:56:07,836 | INFO     | time since job start (53634s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-26 19:56:09,122 | INFO     | monitor loop #3723: job 0:6886145729 is in state 'finished'
[2025-11-26 20:56:55] 2025-11-26 19:56:09,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-26 19:56:09,843 | INFO     | time since job start (53636s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-26 19:56:11,354 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:56:55] 2025-11-26 19:56:11,355 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 20:56:55] 2025-11-26 19:56:11,357 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6886145729/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:56:55] 2025-11-26 19:56:11,357 | INFO     | extracted standard info from prmon json
[2025-11-26 20:56:55] 2025-11-26 19:56:11,358 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:56:55] 2025-11-26 19:56:11,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:56:55] 2025-11-26 19:56:11,374 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:56:55] 2025-11-26 19:56:11,375 | INFO     | sum of square deviations: 202085962099.95877
[2025-11-26 20:56:55] 2025-11-26 19:56:11,396 | INFO     | sum of deviations: 2844850075810.778
[2025-11-26 20:56:55] 2025-11-26 19:56:11,397 | INFO     | mean x: 1764160425.9930797
[2025-11-26 20:56:55] 2025-11-26 19:56:11,397 | INFO     | mean y: 3167846.129181084
[2025-11-26 20:56:55] 2025-11-26 19:56:11,397 | INFO     | intersect: -24831669118.67853
[2025-11-26 20:56:55] 2025-11-26 19:56:11,398 | INFO     | chi2: 38.92727107051027
[2025-11-26 20:56:55] 2025-11-26 19:56:11,399 | INFO     | sum of square deviations: 198610057197.49854
[2025-11-26 20:56:55] 2025-11-26 19:56:11,432 | INFO     | sum of deviations: 3186709577938.8604
[2025-11-26 20:56:55] 2025-11-26 19:56:11,432 | INFO     | mean x: 1764160273.4988399
[2025-11-26 20:56:55] 2025-11-26 19:56:11,432 | INFO     | mean y: 3182847.860788863
[2025-11-26 20:56:55] 2025-11-26 19:56:11,433 | INFO     | intersect: -28302868315.437492
[2025-11-26 20:56:55] 2025-11-26 19:56:11,434 | INFO     | chi2: 35.50620536062816
[2025-11-26 20:56:55] 2025-11-26 19:56:11,434 | INFO     | current chi2=35.50620536062816 (change=8.788352267708218 %)
[2025-11-26 20:56:55] 2025-11-26 19:56:11,434 | INFO     | right removable region: 861
[2025-11-26 20:56:55] 2025-11-26 19:56:11,435 | INFO     | sum of square deviations: 198609531987.4985
[2025-11-26 20:56:55] 2025-11-26 19:56:11,464 | INFO     | sum of deviations: 2426326296798.3193
[2025-11-26 20:56:55] 2025-11-26 19:56:11,464 | INFO     | mean x: 1764160578.4988399
[2025-11-26 20:56:55] 2025-11-26 19:56:11,465 | INFO     | mean y: 3186206.3201856147
[2025-11-26 20:56:55] 2025-11-26 19:56:11,465 | INFO     | intersect: -21548796523.57267
[2025-11-26 20:56:55] 2025-11-26 19:56:11,466 | INFO     | chi2: 33.17681693796159
[2025-11-26 20:56:55] 2025-11-26 19:56:11,466 | INFO     | current chi2=33.17681693796159 (change=14.772302230312246 %)
[2025-11-26 20:56:55] 2025-11-26 19:56:11,466 | INFO     | left removable region: 10
[2025-11-26 20:56:55] 2025-11-26 19:56:11,467 | INFO     | sum of square deviations: 191102818631.88232
[2025-11-26 20:56:55] 2025-11-26 19:56:11,488 | INFO     | sum of deviations: 2433304095832.96
[2025-11-26 20:56:55] 2025-11-26 19:56:11,488 | INFO     | mean x: 1764160548.011751
[2025-11-26 20:56:55] 2025-11-26 19:56:11,488 | INFO     | mean y: 3223699.703877791
[2025-11-26 20:56:55] 2025-11-26 19:56:11,489 | INFO     | intersect: -22459757840.369236
[2025-11-26 20:56:55] 2025-11-26 19:56:11,490 | INFO     | chi2: 23.20860964169562
[2025-11-26 20:56:55] 2025-11-26 19:56:11,490 | INFO     | current memory leak: 12.73 B/s (using 851 data points, chi2=23.21)
[2025-11-26 20:56:55] 2025-11-26 19:56:11,491 | INFO     | could have reported an average CPU frequency of 1999 MHz (31 samples)
[2025-11-26 20:56:55] 2025-11-26 19:56:11,491 | INFO     | ..............................
[2025-11-26 20:56:55] 2025-11-26 19:56:11,491 | INFO     | . Timing measurements:
[2025-11-26 20:56:55] 2025-11-26 19:56:11,491 | INFO     | . get job = 0 s
[2025-11-26 20:56:55] 2025-11-26 19:56:11,491 | INFO     | . initial setup = 5 s
[2025-11-26 20:56:55] 2025-11-26 19:56:11,492 | INFO     | . payload setup = 306 s
[2025-11-26 20:56:55] 2025-11-26 19:56:11,492 | INFO     | . stage-in = 0 s
[2025-11-26 20:56:55] 2025-11-26 19:56:11,492 | INFO     | . payload execution = 53021 s
[2025-11-26 20:56:55] 2025-11-26 19:56:11,492 | INFO     | . stage-out = 6 s
[2025-11-26 20:56:55] 2025-11-26 19:56:11,492 | INFO     | . log creation = 1 s
[2025-11-26 20:56:55] 2025-11-26 19:56:11,492 | INFO     | ..............................
[2025-11-26 20:56:55] 2025-11-26 19:56:11,625 | INFO     | 
[2025-11-26 20:56:55] 2025-11-26 19:56:11,625 | INFO     | job summary report
[2025-11-26 20:56:55] 2025-11-26 19:56:11,625 | INFO     | --------------------------------------------------
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | PanDA job id: 6886145729
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | task id: 47450870
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | errors: (none)
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | pilot state: finished 
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | transexitcode: 0
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | exeerrorcode: 0
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | exeerrordiag: 
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | exitcode: 0
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | exitmsg: OK
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | cpuconsumptiontime: 193022 s
[2025-11-26 20:56:55] 2025-11-26 19:56:11,626 | INFO     | nevents: 1000
[2025-11-26 20:56:55] 2025-11-26 19:56:11,631 | INFO     | neventsw: 0
[2025-11-26 20:56:55] 2025-11-26 19:56:11,631 | INFO     | pid: 5184
[2025-11-26 20:56:55] 2025-11-26 19:56:11,631 | INFO     | pgrp: 5184
[2025-11-26 20:56:55] 2025-11-26 19:56:11,631 | INFO     | corecount: 8
[2025-11-26 20:56:55] 2025-11-26 19:56:11,631 | INFO     | event service: False
[2025-11-26 20:56:55] 2025-11-26 19:56:11,631 | INFO     | sizes: {0: 2283681, 1: 2284366, 2: 2284565, 13: 2284565, 24: 2284621, 34: 2284649, 45: 2284805, 56: 2284833, 66: 2284861, 77: 2284889, 88: 2284945, 99: 2285253, 10
[2025-11-26 20:56:55] 2025-11-26 19:56:11,631 | INFO     | --------------------------------------------------
[2025-11-26 20:56:55] 2025-11-26 19:56:11,631 | INFO     | 
[2025-11-26 20:56:55] 2025-11-26 19:56:11,631 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-26 20:56:55] 2025-11-26 19:56:11,850 | INFO     | time since job start (53638s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-26 19:56:12,040 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,040 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,040 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,040 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,041 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,041 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,041 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,041 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,041 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,041 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,041 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,041 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,041 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,042 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,042 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,042 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,042 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,042 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:56:55] 2025-11-26 19:56:12,042 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,042 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-26 19:56:12,042 | INFO     | job 6886145729 has completed (purged errors)
[2025-11-26 20:56:55] 2025-11-26 19:56:12,043 | INFO     | overall cleanup function is called
[2025-11-26 20:56:55] 2025-11-26 19:56:13,059 | INFO     | --- collectZombieJob: --- 10, [5184]
[2025-11-26 20:56:55] 2025-11-26 19:56:13,059 | INFO     | zombie collector waiting for pid 5184
[2025-11-26 20:56:55] 2025-11-26 19:56:13,059 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:56:55] 2025-11-26 19:56:13,059 | INFO     | collected zombie processes
[2025-11-26 20:56:55] 2025-11-26 19:56:13,059 | INFO     | will attempt to kill all subprocesses of pid=5184
[2025-11-26 20:56:55] 2025-11-26 19:56:13,177 | INFO     | process IDs to be killed: [5184] (in reverse order)
[2025-11-26 20:56:55] 2025-11-26 19:56:14,226 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:56:55] 2025-11-26 19:56:14,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:56:55] 2025-11-26 19:56:14,230 | INFO     | did not find any defunct processes belonging to 5184
[2025-11-26 20:56:55] 2025-11-26 19:56:14,232 | INFO     | did not find any defunct processes belonging to 5184
[2025-11-26 20:56:55] 2025-11-26 19:56:14,285 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:56:55] 2025-11-26 19:56:14,285 | INFO     | ready for new job
[2025-11-26 20:56:55] 2025-11-26 19:56:14,285 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:56:55] 2025-11-26 19:56:14,289 | INFO     | ***************************************
[2025-11-26 20:56:55] 2025-11-26 19:56:14,289 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:56:55] 2025-11-26 19:56:14,289 | INFO     | ***************************************
[2025-11-26 20:56:55] 2025-11-26 19:56:14,289 | INFO     | 
[2025-11-26 20:56:55] 2025-11-26 19:56:14,290 | INFO     | pilot is running in a VM
[2025-11-26 20:56:55] 2025-11-26 19:56:14,290 | INFO     | architecture information:
[2025-11-26 20:56:55] 2025-11-26 19:56:14,303 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:56:55] 2025-11-26 19:56:14,626 | INFO     | cat /etc/os-release:
[2025-11-26 20:56:55] NAME="CentOS Linux"
[2025-11-26 20:56:55] VERSION="7 (Core)"
[2025-11-26 20:56:55] ID="centos"
[2025-11-26 20:56:55] ID_LIKE="rhel fedora"
[2025-11-26 20:56:55] VERSION_ID="7"
[2025-11-26 20:56:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:56:55] ANSI_COLOR="0;31"
[2025-11-26 20:56:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:56:55] HOME_URL="https://www.centos.org/"
[2025-11-26 20:56:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:56:55] 
[2025-11-26 20:56:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:56:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:56:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:56:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:56:55] 
[2025-11-26 20:56:55] 2025-11-26 19:56:14,626 | INFO     | ***************************************
[2025-11-26 20:56:55] 2025-11-26 19:56:15,130 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-26 20:56:55] 2025-11-26 19:56:15,368 | INFO     | sufficient remaining disk space (496257466368 B)
[2025-11-26 20:56:55] 2025-11-26 19:56:15,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:56:55] 2025-11-26 19:56:15,369 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:56:55] 2025-11-26 19:56:15,369 | INFO     | update_server=False
[2025-11-26 20:56:55] 2025-11-26 19:56:15,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:56:55] 2025-11-26 19:56:15,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:56:55] 2025-11-26 19:56:15,370 | INFO     | aborting loop
[2025-11-26 20:56:55] 2025-11-26 19:56:16,151 | INFO     | all payload control threads have been joined
[2025-11-26 20:56:55] 2025-11-26 19:56:16,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:56:55] 2025-11-26 19:56:16,375 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:16,376 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:16,416 | INFO     | all data control threads have been joined
[2025-11-26 20:56:55] 2025-11-26 19:56:16,436 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:16,532 | INFO     | all job control threads have been joined
[2025-11-26 20:56:55] 2025-11-26 19:56:16,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:56:55] 2025-11-26 19:56:16,715 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:16,768 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:16,805 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:56:55] 2025-11-26 19:56:17,058 | INFO     | [job] validate thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:17,118 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:17,154 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:17,157 | INFO     | [payload] control thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:17,422 | INFO     | [data] control thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:17,469 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:17,538 | INFO     | [job] control thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:17,649 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:17,652 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:18,225 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:20,814 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:56:55] 2025-11-26 19:56:45,053 | INFO     | PID=30344 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 20:56:55] 2025-11-26 19:56:45,053 | INFO     | .. there are 9 such processes running
[2025-11-26 20:56:55] 2025-11-26 19:56:45,054 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:56:55] 2025-11-26 19:56:45,054 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:56:55] 2025-11-26 19:56:45,054 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:56:55] 2025-11-26 19:56:46,252 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:56:55] 2025-11-26 19:56:46,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139961246492480)>', '<ExcThread(monitor, started 139960787113728)>']
[2025-11-26 20:56:55] 2025-11-26 19:56:47,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:56:55] 2025-11-26 19:56:47,066 | INFO     | [monitor] control thread has ended
[2025-11-26 20:56:55] 2025-11-26 19:56:51,301 | INFO     | all workflow threads have been joined
[2025-11-26 20:56:55] 2025-11-26 19:56:51,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:56:55] 2025-11-26 19:56:51,301 | INFO     | traces error code: 0
[2025-11-26 20:56:55] 2025-11-26 19:56:51,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:56:55] 2025-11-26 19:56:52,127 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:56:55] 2025-11-26 19:56:52,228 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:56:55] 2025-11-26 19:56:52,316 [wrapper] pilotpid: 30344
[2025-11-26 20:56:55] 2025-11-26 19:56:52,399 [wrapper] Pilot exit status: 0
[2025-11-26 20:56:55] 2025-11-26 19:56:52,748 [wrapper] pandaids: 6886145729
[2025-11-26 20:56:55] 2025-11-26 19:56:53,594 [wrapper] cleanup supervisor_pilot  9093 30345
[2025-11-26 20:56:55] 2025-11-26 19:56:53,619 [wrapper] Test setup, not cleaning
[2025-11-26 20:56:55] 2025-11-26 19:56:53,687 [wrapper] apfmon messages muted
[2025-11-26 20:56:55] 2025-11-26 19:56:53,753 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:56:55] 2025-11-26 19:56:53,812 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:56:55]  *** Error codes and diagnostics ***
[2025-11-26 20:56:55]     "exeErrorCode": 0,
[2025-11-26 20:56:55]     "exeErrorDiag": "",
[2025-11-26 20:56:55]     "pilotErrorCode": 0,
[2025-11-26 20:56:55]     "pilotErrorDiag": "",
[2025-11-26 20:56:55]  *** Listing of results directory ***
[2025-11-26 20:56:55] total 926516
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc    576529 Nov 14 14:17 pilot3.tar.gz
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc      5112 Nov 14 15:04 queuedata.json
[2025-11-26 20:56:55] -rwx------. 1 boinc boinc     36292 Nov 14 15:06 runpilot2-wrapper.sh
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc       100 Nov 26 05:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:56:55] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 05:58 run_atlas
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc       105 Nov 26 05:58 job.xml
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc      6391 Nov 26 05:58 init_data.xml
[2025-11-26 20:56:55] -rw-r--r--. 2 boinc boinc 379473818 Nov 26 05:58 EVNT.14545720._000013.pool.root.1
[2025-11-26 20:56:55] -rw-r--r--. 2 boinc boinc     15120 Nov 26 05:58 start_atlas.sh
[2025-11-26 20:56:55] drwxrwx--x. 2 boinc boinc        68 Nov 26 05:58 shared
[2025-11-26 20:56:55] -rw-r--r--. 2 boinc boinc    590124 Nov 26 05:58 input.tar.gz
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc         0 Nov 26 05:58 boinc_lockfile
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc      2928 Nov 26 05:58 pandaJob.out
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc    991877 Nov 26 06:02 agis_schedconf.cvmfs.json
[2025-11-26 20:56:55] drwx------. 5 boinc boinc      4096 Nov 26 06:02 pilot3
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc       533 Nov 26 20:37 boinc_task_state.xml
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc 546840532 Nov 26 20:53 HITS.47450870._000125.pool.root.1
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc      1031 Nov 26 20:54 memory_monitor_summary.json
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc   1516240 Nov 26 20:54 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc   2136042 Nov 26 20:54 log.47450870._000125.job.log.tgz.1
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc        95 Nov 26 20:56 pilot_heartbeat.json
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc     27772 Nov 26 20:56 heartbeat.json
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc      8192 Nov 26 20:56 boinc_mmap_file
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc        29 Nov 26 20:56 wrapper_checkpoint.txt
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc      4884 Nov 26 20:56 pilotlog.txt
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc   7114503 Nov 26 20:56 log.47450870._000125.job.log.1
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc       353 Nov 26 20:56 output.list
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc       620 Nov 26 20:56 runtime_log
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc   9287680 Nov 26 20:56 result.tar.gz
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc      8703 Nov 26 20:56 runtime_log.err
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc       661 Nov 26 20:56 DAHNDmkc9d8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbbJODmM8a5um.diag
[2025-11-26 20:56:55] -rw-r--r--. 1 boinc boinc     21434 Nov 26 20:56 stderr.txt
[2025-11-26 20:56:55] HITS file was successfully produced:
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc 546840532 Nov 26 20:53 shared/HITS.pool.root.1
[2025-11-26 20:56:55]  *** Contents of shared directory: ***
[2025-11-26 20:56:55] total 914272
[2025-11-26 20:56:55] -rw-r--r--. 2 boinc boinc 379473818 Nov 26 05:58 ATLAS.root_0
[2025-11-26 20:56:55] -rw-r--r--. 2 boinc boinc     15120 Nov 26 05:58 start_atlas.sh
[2025-11-26 20:56:55] -rw-r--r--. 2 boinc boinc    590124 Nov 26 05:58 input.tar.gz
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc 546840532 Nov 26 20:53 HITS.pool.root.1
[2025-11-26 20:56:55] -rw-------. 1 boinc boinc   9287680 Nov 26 20:56 result.tar.gz
20:56:56 (26411): run_atlas exited; CPU time 193296.211129
20:56:56 (26411): called boinc_finish(0)

</stderr_txt>
]]>

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