Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:33:13 (985522): wrapper (7.7.26015): starting
03:33:13 (985522): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 03:33:13] Arguments: --nthreads 12
[2025-11-23 03:33:13] Threads: 12
[2025-11-23 03:33:13] Checking for CVMFS
[2025-11-23 03:33:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 03:33:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 03:33:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 03:33:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 03:33:15] 2.11.5.0 201091 23916 133076 153207 2 315 41626301 45568001 21037 130560 0 229700431 99.755 172364576 27453 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-23 03:33:15] CVMFS is ok
[2025-11-23 03:33:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 03:33:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 03:33:15] Further information can be found at the LHC@home message board.
[2025-11-23 03:33:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:33:15] Checking for apptainer binary...
[2025-11-23 03:33:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 03:33:15] Running /usr/bin/apptainer --version
[2025-11-23 03:33:15] apptainer version 1.4.1-1.el9
[2025-11-23 03:33:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:33:15] wns0040.triumf.lcg
[2025-11-23 03:33:15] apptainer works
[2025-11-23 03:33:15] Set ATHENA_PROC_NUMBER=12
[2025-11-23 03:33:15] Set ATHENA_CORE_NUMBER=12
[2025-11-23 03:33:15] Starting ATLAS job with PandaID=6895351480
[2025-11-23 03:33:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 03:40:13]  *** The last 200 lines of the pilot log: ***
[2025-11-23 03:40:13] 2025-11-23 11:39:38,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 03:40:13] 2025-11-23 11:39:38,293 | WARNING  | wrong length of table data, x=[1763897708.0, 1763897769.0, 1763897830.0], y=[989.0, 677473.0, 0.0] (must be same and length>=4)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,294 | INFO     | could have reported an average CPU frequency of 2762 MHz (4 samples)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | ..............................
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . Timing measurements:
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . get job = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . initial setup = 3 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . payload setup = 21 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . stage-in = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . payload execution = 138 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . stage-out = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . log creation = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | ..............................
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895351480/pilotlog.txt
[2025-11-23 03:40:13] 2025-11-23 11:39:38,369 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 03:40:13] - Log from pilotlog.txt -
[2025-11-23 03:40:13] 2025-11-23 11:39:38,281 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895351480/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,281 | INFO     | extracted standard info from prmon json
[2025-11-23 03:40:13] 2025-11-23 11:39:38,281 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:40:13] 2025-11-23 11:39:38,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:40:13] 2025-11-23 11:39:38,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 03:40:13] 2025-11-23 11:39:38,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 03:40:13] 2025-11-23 11:39:38,293 | WARNING  | wrong length of table data, x=[1763897708.0, 1763897769.0, 1763897830.0], y=[989.0, 677473.0, 0.0] (must be same and length>=4)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,294 | INFO     | could have reported an average CPU frequency of 2762 MHz (4 samples)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | ..............................
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . Timing measurements:
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . get job = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . initial setup = 3 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . payload setup = 21 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . stage-in = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . payload execution = 138 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . stage-out = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . log creation = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | ..............................
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895351480/pilotlog.txt
[2025-11-23 03:40:13] 2025-11-23 11:39:38,369 | WARNING  | 
[2025-11-23 03:40:13] [begin log extracts]
[2025-11-23 03:40:13] - Log from pilotlog.txt -
[2025-11-23 03:40:13] 2025-11-23 11:39:38,281 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895351480/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,281 | INFO     | extracted standard info from prmon json
[2025-11-23 03:40:13] 2025-11-23 11:39:38,281 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:40:13] 2025-11-23 11:39:38,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:40:13] 2025-11-23 11:39:38,293 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 03:40:13] 2025-11-23 11:39:38,293 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 03:40:13] 2025-11-23 11:39:38,293 | WARNING  | wrong length of table data, x=[1763897708.0, 1763897769.0, 1763897830.0], y=[989.0, 677473.0, 0.0] (must be same and length>=4)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,294 | INFO     | could have reported an average CPU frequency of 2762 MHz (4 samples)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | ..............................
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . Timing measurements:
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . get job = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . initial setup = 3 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . payload setup = 21 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . stage-in = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . payload execution = 138 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . stage-out = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | . log creation = 0 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | ..............................
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 03:40:13] 2025-11-23 11:39:38,295 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895351480/pilotlog.txt
[2025-11-23 03:40:13] [end log extracts]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,369 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,370 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | 
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | job summary report
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | --------------------------------------------------
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | PanDA job id: 6895351480
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | task id: 47556137
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 03:37:05,517 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | pilot state: failed 
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | transexitcode: 65
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | exeerrorcode: 65
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | exitcode: 65
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | cpuconsumptiontime: 42 s
[2025-11-23 03:40:13] 2025-11-23 11:39:38,584 | INFO     | nevents: 0
[2025-11-23 03:40:13] 2025-11-23 11:39:38,585 | INFO     | neventsw: 0
[2025-11-23 03:40:13] 2025-11-23 11:39:38,585 | INFO     | pid: 995998
[2025-11-23 03:40:13] 2025-11-23 11:39:38,585 | INFO     | pgrp: 995998
[2025-11-23 03:40:13] 2025-11-23 11:39:38,585 | INFO     | corecount: 12
[2025-11-23 03:40:13] 2025-11-23 11:39:38,585 | INFO     | event service: False
[2025-11-23 03:40:13] 2025-11-23 11:39:38,585 | INFO     | sizes: {0: 2297927, 1: 2298609, 2: 2298808, 13: 2298808, 21: 2299126, 24: 2299154, 163: 2324758, 164: 2324734, 166: 2329052, 168: 2329080, 308: 2329246}
[2025-11-23 03:40:13] 2025-11-23 11:39:38,585 | INFO     | --------------------------------------------------
[2025-11-23 03:40:13] 2025-11-23 11:39:38,585 | INFO     | 
[2025-11-23 03:40:13] 2025-11-23 11:39:38,585 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 03:40:13] 2025-11-23 11:39:38,779 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,779 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | job 6895351480 has completed (purged errors)
[2025-11-23 03:40:13] 2025-11-23 11:39:38,780 | INFO     | overall cleanup function is called
[2025-11-23 03:40:13] 2025-11-23 11:39:39,808 | INFO     | --- collectZombieJob: --- 10, [995998]
[2025-11-23 03:40:13] 2025-11-23 11:39:39,808 | INFO     | zombie collector waiting for pid 995998
[2025-11-23 03:40:13] 2025-11-23 11:39:39,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 03:40:13] 2025-11-23 11:39:39,808 | INFO     | collected zombie processes
[2025-11-23 03:40:13] 2025-11-23 11:39:39,808 | INFO     | will attempt to kill all subprocesses of pid=995998
[2025-11-23 03:40:13] 2025-11-23 11:39:40,112 | INFO     | process IDs to be killed: [995998] (in reverse order)
[2025-11-23 03:40:13] 2025-11-23 11:39:40,303 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 03:40:13] 2025-11-23 11:39:40,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 03:40:13] 2025-11-23 11:39:40,349 | INFO     | did not find any defunct processes belonging to 995998
[2025-11-23 03:40:13] 2025-11-23 11:39:40,388 | INFO     | did not find any defunct processes belonging to 995998
[2025-11-23 03:40:13] 2025-11-23 11:39:40,389 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 03:40:13] 2025-11-23 11:39:40,389 | INFO     | ready for new job
[2025-11-23 03:40:13] 2025-11-23 11:39:40,389 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 03:40:13] 2025-11-23 11:39:40,390 | INFO     | ***************************************
[2025-11-23 03:40:13] 2025-11-23 11:39:40,390 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 03:40:13] 2025-11-23 11:39:40,390 | INFO     | ***************************************
[2025-11-23 03:40:13] 2025-11-23 11:39:40,390 | INFO     | 
[2025-11-23 03:40:13] 2025-11-23 11:39:40,408 | INFO     | architecture information:
[2025-11-23 03:40:13] 2025-11-23 11:39:40,409 | INFO     | executing command: cat /etc/os-release
[2025-11-23 03:40:13] 2025-11-23 11:39:40,520 | INFO     | cat /etc/os-release:
[2025-11-23 03:40:13] NAME="CentOS Linux"
[2025-11-23 03:40:13] VERSION="7 (Core)"
[2025-11-23 03:40:13] ID="centos"
[2025-11-23 03:40:13] ID_LIKE="rhel fedora"
[2025-11-23 03:40:13] VERSION_ID="7"
[2025-11-23 03:40:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 03:40:13] ANSI_COLOR="0;31"
[2025-11-23 03:40:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 03:40:13] HOME_URL="https://www.centos.org/"
[2025-11-23 03:40:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 03:40:13] 
[2025-11-23 03:40:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 03:40:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 03:40:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 03:40:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 03:40:13] 
[2025-11-23 03:40:13] 2025-11-23 11:39:40,520 | INFO     | ***************************************
[2025-11-23 03:40:13] 2025-11-23 11:39:41,024 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 03:40:13] 2025-11-23 11:39:41,172 | INFO     | sufficient remaining disk space (1877341110272 B)
[2025-11-23 03:40:13] 2025-11-23 11:39:41,172 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 03:40:13] 2025-11-23 11:39:41,172 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 03:40:13] 2025-11-23 11:39:41,172 | INFO     | update_server=False
[2025-11-23 03:40:13] 2025-11-23 11:39:41,172 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 03:40:13] 2025-11-23 11:39:41,174 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 03:40:13] 2025-11-23 11:39:41,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 03:40:13] 2025-11-23 11:39:41,630 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:40:13] 2025-11-23 11:39:41,630 | INFO     | aborting loop
[2025-11-23 03:40:13] 2025-11-23 11:39:41,994 | INFO     | all data control threads have been joined
[2025-11-23 03:40:13] 2025-11-23 11:39:42,179 | INFO     | [job] retrieve thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:42,284 | INFO     | all job control threads have been joined
[2025-11-23 03:40:13] 2025-11-23 11:39:42,387 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:42,615 | INFO     | all payload control threads have been joined
[2025-11-23 03:40:13] 2025-11-23 11:39:42,636 | INFO     | [job] job monitor thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:42,898 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:42,906 | INFO     | [data] copytool_in thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:43,000 | INFO     | [data] control thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:43,056 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:43,181 | INFO     | [data] copytool_out thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:43,290 | INFO     | [job] control thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:43,446 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:43,494 | INFO     | [job] validate thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:43,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:40:13] 2025-11-23 11:39:43,621 | INFO     | [payload] control thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:43,649 | INFO     | [payload] failed_post thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:43,768 | INFO     | [payload] validate_post thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:44,600 | INFO     | [job] queue monitor thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:45,184 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 03:40:13] 2025-11-23 11:39:48,979 | INFO     | [monitor] cgroup control has ended
[2025-11-23 03:40:13] 2025-11-23 11:39:50,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139935165994816)>', '<ExcThread(monitor, started 139934774052608)>']
[2025-11-23 03:40:13] 2025-11-23 11:39:55,812 | INFO     | all workflow threads have been joined
[2025-11-23 03:40:13] 2025-11-23 11:39:55,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 03:40:13] 2025-11-23 11:39:55,813 | INFO     | traces error code: 0
[2025-11-23 03:40:13] 2025-11-23 11:39:55,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 03:40:13] 2025-11-23 11:40:11,763 | INFO     | PID=989269 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 03:40:13] 2025-11-23 11:40:11,764 | INFO     | .. there are 28 such processes running
[2025-11-23 03:40:13] 2025-11-23 11:40:11,764 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 03:40:13] 2025-11-23 11:40:11,764 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 03:40:13] 2025-11-23 11:40:11,764 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 03:40:13] 2025-11-23 11:40:11,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 03:40:13] 2025-11-23 11:40:11,764 | INFO     | [monitor] control thread has ended
[2025-11-23 03:40:13] 2025-11-23 11:40:12,325 [wrapper] ==== pilot stdout END ====
[2025-11-23 03:40:13] 2025-11-23 11:40:12,345 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 03:40:13] 2025-11-23 11:40:12,366 [wrapper] pilotpid: 989269
[2025-11-23 03:40:13] 2025-11-23 11:40:12,389 [wrapper] Pilot exit status: 0
[2025-11-23 03:40:13] 2025-11-23 11:40:12,546 [wrapper] pandaids: 6895351480
[2025-11-23 03:40:13] 2025-11-23 11:40:12,889 [wrapper] cleanup supervisor_pilot  989275 989270
[2025-11-23 03:40:13] 2025-11-23 11:40:12,933 [wrapper] Test setup, not cleaning
[2025-11-23 03:40:13] 2025-11-23 11:40:12,971 [wrapper] apfmon messages muted
[2025-11-23 03:40:13] 2025-11-23 11:40:12,989 [wrapper] ==== wrapper stdout END ====
[2025-11-23 03:40:13] 2025-11-23 11:40:13,000 [wrapper] ==== wrapper stderr END ====
[2025-11-23 03:40:13]  *** Error codes and diagnostics ***
[2025-11-23 03:40:13]     "exeErrorCode": 65,
[2025-11-23 03:40:13]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-23 03:40:13]     "pilotErrorCode": 1305,
[2025-11-23 03:40:13]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-23 03:40:13]  *** Listing of results directory ***
[2025-11-23 03:40:13] total 403632
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:28 pilot3.tar.gz
[2025-11-23 03:40:13] -rwx------. 1 boinc boinc     36292 Nov 22 16:37 runpilot2-wrapper.sh
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc      5112 Nov 22 16:37 queuedata.json
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc       100 Nov 23 03:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 03:40:13] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 03:33 run_atlas
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc       105 Nov 23 03:33 job.xml
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc      6595 Nov 23 03:33 init_data.xml
[2025-11-23 03:40:13] -rw-r--r--. 2 boinc boinc 409080231 Nov 23 03:33 EVNT.47483658._000551.pool.root.1
[2025-11-23 03:40:13] -rw-r--r--. 2 boinc boinc     15847 Nov 23 03:33 start_atlas.sh
[2025-11-23 03:40:13] drwxrwx--x. 2 boinc boinc      4096 Nov 23 03:33 shared
[2025-11-23 03:40:13] -rw-r--r--. 2 boinc boinc    590095 Nov 23 03:33 input.tar.gz
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc         0 Nov 23 03:33 boinc_lockfile
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc      2784 Nov 23 03:33 pandaJob.out
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc    989784 Nov 23 03:33 agis_schedconf.cvmfs.json
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc   1526164 Nov 23 03:33 agis_ddmendpoints.agis.ALL.json
[2025-11-23 03:40:13] drwx------. 5 boinc boinc      4096 Nov 23 03:33 pilot3
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc       524 Nov 23 03:36 boinc_task_state.xml
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc       993 Nov 23 03:37 memory_monitor_summary.json
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc     49962 Nov 23 03:37 log.47556137._005467.job.log.tgz.1
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc     10338 Nov 23 03:39 heartbeat.json
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc       822 Nov 23 03:40 pilotlog.txt
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc        95 Nov 23 03:40 pilot_heartbeat.json
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc      8192 Nov 23 03:40 boinc_mmap_file
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc    109744 Nov 23 03:40 log.47556137._005467.job.log.1
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc       186 Nov 23 03:40 output.list
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc       620 Nov 23 03:40 runtime_log
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc    184320 Nov 23 03:40 result.tar.gz
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc      8636 Nov 23 03:40 runtime_log.err
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc       645 Nov 23 03:40 pBzKDm4HDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxTKKDme3dTjn.diag
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc        23 Nov 23 03:40 wrapper_checkpoint.txt
[2025-11-23 03:40:13] -rw-r--r--. 1 boinc boinc     22568 Nov 23 03:40 stderr.txt
[2025-11-23 03:40:13] No HITS result produced
[2025-11-23 03:40:13]  *** Contents of shared directory: ***
[2025-11-23 03:40:13] total 400276
[2025-11-23 03:40:13] -rw-r--r--. 2 boinc boinc 409080231 Nov 23 03:33 ATLAS.root_0
[2025-11-23 03:40:13] -rw-r--r--. 2 boinc boinc     15847 Nov 23 03:33 start_atlas.sh
[2025-11-23 03:40:13] -rw-r--r--. 2 boinc boinc    590095 Nov 23 03:33 input.tar.gz
[2025-11-23 03:40:13] -rw-------. 1 boinc boinc    184320 Nov 23 03:40 result.tar.gz
03:40:15 (985522): run_atlas exited; CPU time 48.090282
03:40:15 (985522): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN