Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:39:44 (3516306): wrapper (7.7.26015): starting
03:39:44 (3516306): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 03:39:44] Arguments: --nthreads 12
[2025-11-23 03:39:44] Threads: 12
[2025-11-23 03:39:44] Checking for CVMFS
[2025-11-23 03:39:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 03:39:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 03:39:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 03:39:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 03:39:45] 2.11.5.0 2081521 23973 286736 153207 0 212 44566734 45568000 19109 130560 0 152453623 99.790 91049198 18470 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-23 03:39:45] CVMFS is ok
[2025-11-23 03:39:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 03:39:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 03:39:45] Further information can be found at the LHC@home message board.
[2025-11-23 03:39:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:39:45] Checking for apptainer binary...
[2025-11-23 03:39:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 03:39:45] Running /usr/bin/apptainer --version
[2025-11-23 03:39:46] apptainer version 1.4.1-1.el9
[2025-11-23 03:39:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:39:46] wns0041.triumf.lcg
[2025-11-23 03:39:46] apptainer works
[2025-11-23 03:39:46] Set ATHENA_PROC_NUMBER=12
[2025-11-23 03:39:46] Set ATHENA_CORE_NUMBER=12
[2025-11-23 03:39:47] Starting ATLAS job with PandaID=6895351381
[2025-11-23 03:39:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 03:47:28]  *** The last 200 lines of the pilot log: ***
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | could have reported an average CPU frequency of 1323 MHz (4 samples)
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | ..............................
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . Timing measurements:
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . get job = 0 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . initial setup = 5 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . payload setup = 18 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . stage-in = 0 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . payload execution = 159 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . stage-out = 2 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | . log creation = 0 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | ..............................
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895351381/pilotlog.txt
[2025-11-23 03:47:28] 2025-11-23 11:46:43,294 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 03:47:28] - Log from pilotlog.txt -
[2025-11-23 03:47:28] 2025-11-23 11:46:43,218 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895351381/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | INFO     | extracted standard info from prmon json
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 03:47:28] 2025-11-23 11:46:43,232 | WARNING  | wrong length of table data, x=[1763898116.0, 1763898177.0, 1763898238.0], y=[20988.0, 701585.0, 822553.0] (must be same and length>=4)
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | could have reported an average CPU frequency of 1323 MHz (4 samples)
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | ..............................
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . Timing measurements:
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . get job = 0 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . initial setup = 5 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . payload setup = 18 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . stage-in = 0 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . payload execution = 159 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . stage-out = 2 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | . log creation = 0 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | ..............................
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895351381/pilotlog.txt
[2025-11-23 03:47:28] 2025-11-23 11:46:43,295 | WARNING  | 
[2025-11-23 03:47:28] [begin log extracts]
[2025-11-23 03:47:28] - Log from pilotlog.txt -
[2025-11-23 03:47:28] 2025-11-23 11:46:43,218 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895351381/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | INFO     | extracted standard info from prmon json
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 03:47:28] 2025-11-23 11:46:43,219 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 03:47:28] 2025-11-23 11:46:43,232 | WARNING  | wrong length of table data, x=[1763898116.0, 1763898177.0, 1763898238.0], y=[20988.0, 701585.0, 822553.0] (must be same and length>=4)
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | could have reported an average CPU frequency of 1323 MHz (4 samples)
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | ..............................
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . Timing measurements:
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . get job = 0 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . initial setup = 5 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . payload setup = 18 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . stage-in = 0 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . payload execution = 159 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,234 | INFO     | . stage-out = 2 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | . log creation = 0 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | ..............................
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 03:47:28] 2025-11-23 11:46:43,235 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895351381/pilotlog.txt
[2025-11-23 03:47:28] [end log extracts]
[2025-11-23 03:47:28] 2025-11-23 11:46:43,296 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-23 03:47:28] 2025-11-23 11:46:43,297 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 03:47:28] 2025-11-23 11:46:43,906 | INFO     | 
[2025-11-23 03:47:28] 2025-11-23 11:46:43,919 | INFO     | job summary report
[2025-11-23 03:47:28] 2025-11-23 11:46:43,919 | INFO     | --------------------------------------------------
[2025-11-23 03:47:28] 2025-11-23 11:46:43,919 | INFO     | PanDA job id: 6895351381
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | task id: 47556137
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 03:44:00,479 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | pilot state: failed 
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | transexitcode: 65
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | exeerrorcode: 65
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | exitcode: 65
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-23 03:47:28] 2025-11-23 11:46:43,920 | INFO     | cpuconsumptiontime: 74 s
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | nevents: 0
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | neventsw: 0
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | pid: 3532452
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | pgrp: 3532452
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | corecount: 12
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | event service: False
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | sizes: {0: 2297928, 1: 2298781, 2: 2298781, 13: 2298809, 15: 2299127, 23: 2299155, 180: 2324760, 181: 2324736, 184: 2329054, 188: 2329082, 337: 2329248}
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | --------------------------------------------------
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | 
[2025-11-23 03:47:28] 2025-11-23 11:46:43,921 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 03:47:28] 2025-11-23 11:46:44,123 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,123 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,123 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,123 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,123 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,123 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,124 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,125 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 03:47:28] 2025-11-23 11:46:44,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,125 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 03:47:28] 2025-11-23 11:46:44,125 | INFO     | job 6895351381 has completed (purged errors)
[2025-11-23 03:47:28] 2025-11-23 11:46:44,125 | INFO     | overall cleanup function is called
[2025-11-23 03:47:28] 2025-11-23 11:46:45,174 | INFO     | --- collectZombieJob: --- 10, [3532452]
[2025-11-23 03:47:28] 2025-11-23 11:46:45,174 | INFO     | zombie collector waiting for pid 3532452
[2025-11-23 03:47:28] 2025-11-23 11:46:45,174 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 03:47:28] 2025-11-23 11:46:45,174 | INFO     | collected zombie processes
[2025-11-23 03:47:28] 2025-11-23 11:46:45,175 | INFO     | will attempt to kill all subprocesses of pid=3532452
[2025-11-23 03:47:28] 2025-11-23 11:46:45,653 | INFO     | PID=3525342 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 03:47:28] 2025-11-23 11:46:45,653 | INFO     | .. there are 28 such processes running
[2025-11-23 03:47:28] 2025-11-23 11:46:47,235 | INFO     | process IDs to be killed: [3532452] (in reverse order)
[2025-11-23 03:47:28] 2025-11-23 11:46:47,476 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 03:47:28] 2025-11-23 11:46:47,476 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 03:47:28] 2025-11-23 11:46:47,546 | INFO     | did not find any defunct processes belonging to 3532452
[2025-11-23 03:47:28] 2025-11-23 11:46:47,586 | INFO     | did not find any defunct processes belonging to 3532452
[2025-11-23 03:47:28] 2025-11-23 11:46:47,587 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 03:47:28] 2025-11-23 11:46:47,588 | INFO     | ready for new job
[2025-11-23 03:47:28] 2025-11-23 11:46:47,597 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 03:47:28] 2025-11-23 11:46:47,599 | INFO     | ***************************************
[2025-11-23 03:47:28] 2025-11-23 11:46:47,599 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 03:47:28] 2025-11-23 11:46:47,599 | INFO     | ***************************************
[2025-11-23 03:47:28] 2025-11-23 11:46:47,600 | INFO     | 
[2025-11-23 03:47:28] 2025-11-23 11:46:47,604 | INFO     | architecture information:
[2025-11-23 03:47:28] 2025-11-23 11:46:47,608 | INFO     | executing command: cat /etc/os-release
[2025-11-23 03:47:28] 2025-11-23 11:46:47,683 | INFO     | cat /etc/os-release:
[2025-11-23 03:47:28] NAME="CentOS Linux"
[2025-11-23 03:47:28] VERSION="7 (Core)"
[2025-11-23 03:47:28] ID="centos"
[2025-11-23 03:47:28] ID_LIKE="rhel fedora"
[2025-11-23 03:47:28] VERSION_ID="7"
[2025-11-23 03:47:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 03:47:28] ANSI_COLOR="0;31"
[2025-11-23 03:47:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 03:47:28] HOME_URL="https://www.centos.org/"
[2025-11-23 03:47:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 03:47:28] 
[2025-11-23 03:47:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 03:47:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 03:47:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 03:47:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 03:47:28] 
[2025-11-23 03:47:28] 2025-11-23 11:46:47,684 | INFO     | ***************************************
[2025-11-23 03:47:28] 2025-11-23 11:46:48,190 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 03:47:28] 2025-11-23 11:46:48,320 | INFO     | sufficient remaining disk space (1536186908672 B)
[2025-11-23 03:47:28] 2025-11-23 11:46:48,320 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 03:47:28] 2025-11-23 11:46:48,320 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 03:47:28] 2025-11-23 11:46:48,321 | INFO     | update_server=False
[2025-11-23 03:47:28] 2025-11-23 11:46:48,321 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 03:47:28] 2025-11-23 11:46:48,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 03:47:28] 2025-11-23 11:46:48,322 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:47:28] 2025-11-23 11:46:48,322 | INFO     | aborting loop
[2025-11-23 03:47:28] 2025-11-23 11:46:48,539 | INFO     | all data control threads have been joined
[2025-11-23 03:47:28] 2025-11-23 11:46:48,543 | INFO     | all job control threads have been joined
[2025-11-23 03:47:28] 2025-11-23 11:46:48,818 | INFO     | all payload control threads have been joined
[2025-11-23 03:47:28] 2025-11-23 11:46:48,932 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:47:28] 2025-11-23 11:46:49,327 | INFO     | [job] retrieve thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:49,328 | INFO     | [job] job monitor thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:49,381 | INFO     | [payload] failed_post thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:49,546 | INFO     | [data] control thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:49,548 | INFO     | [job] control thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:49,689 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:49,699 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:49,824 | INFO     | [payload] control thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:49,938 | INFO     | [job] queue monitor thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:50,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 03:47:28] 2025-11-23 11:46:50,111 | INFO     | [data] copytool_in thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:50,150 | INFO     | [job] validate thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:50,330 | INFO     | [data] copytool_out thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:50,344 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:50,431 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:50,841 | INFO     | [payload] validate_post thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:46:54,036 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 03:47:28] 2025-11-23 11:47:18,960 | INFO     | PID=3525342 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 03:47:28] 2025-11-23 11:47:18,962 | INFO     | .. there are 28 such processes running
[2025-11-23 03:47:28] 2025-11-23 11:47:18,962 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 03:47:28] 2025-11-23 11:47:18,962 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 03:47:28] 2025-11-23 11:47:18,962 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 03:47:28] 2025-11-23 11:47:21,278 | INFO     | [monitor] cgroup control has ended
[2025-11-23 03:47:28] 2025-11-23 11:47:22,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139665310955328)>', '<ExcThread(monitor, started 139664904132352)>']
[2025-11-23 03:47:28] 2025-11-23 11:47:22,986 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 03:47:28] 2025-11-23 11:47:22,986 | INFO     | [monitor] control thread has ended
[2025-11-23 03:47:28] 2025-11-23 11:47:27,521 | INFO     | all workflow threads have been joined
[2025-11-23 03:47:28] 2025-11-23 11:47:27,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 03:47:28] 2025-11-23 11:47:27,522 | INFO     | traces error code: 0
[2025-11-23 03:47:28] 2025-11-23 11:47:27,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 03:47:28] 2025-11-23 11:47:27,859 [wrapper] ==== pilot stdout END ====
[2025-11-23 03:47:28] 2025-11-23 11:47:27,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 03:47:28] 2025-11-23 11:47:27,866 [wrapper] pilotpid: 3525342
[2025-11-23 03:47:28] 2025-11-23 11:47:27,869 [wrapper] Pilot exit status: 0
[2025-11-23 03:47:28] 2025-11-23 11:47:27,946 [wrapper] pandaids: 6895351381
[2025-11-23 03:47:28] 2025-11-23 11:47:28,147 [wrapper] cleanup supervisor_pilot 3525348 3525343
[2025-11-23 03:47:28] 2025-11-23 11:47:28,151 [wrapper] Test setup, not cleaning
[2025-11-23 03:47:28] 2025-11-23 11:47:28,154 [wrapper] apfmon messages muted
[2025-11-23 03:47:28] 2025-11-23 11:47:28,158 [wrapper] ==== wrapper stdout END ====
[2025-11-23 03:47:28] 2025-11-23 11:47:28,161 [wrapper] ==== wrapper stderr END ====
[2025-11-23 03:47:28]  *** Error codes and diagnostics ***
[2025-11-23 03:47:28]     "exeErrorCode": 65,
[2025-11-23 03:47:28]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-23 03:47:28]     "pilotErrorCode": 1305,
[2025-11-23 03:47:28]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-23 03:47:28]  *** Listing of results directory ***
[2025-11-23 03:47:28] total 402592
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:13 pilot3.tar.gz
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc      5112 Nov 22 16:23 queuedata.json
[2025-11-23 03:47:28] -rwx------. 1 boinc boinc     36292 Nov 22 16:23 runpilot2-wrapper.sh
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc       100 Nov 23 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 03:47:28] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 03:39 run_atlas
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc       105 Nov 23 03:39 job.xml
[2025-11-23 03:47:28] -rw-r--r--. 2 boinc boinc 408008784 Nov 23 03:39 EVNT.47483658._000547.pool.root.1
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc      6595 Nov 23 03:39 init_data.xml
[2025-11-23 03:47:28] -rw-r--r--. 2 boinc boinc     15847 Nov 23 03:39 start_atlas.sh
[2025-11-23 03:47:28] drwxrwx--x. 2 boinc boinc      4096 Nov 23 03:39 shared
[2025-11-23 03:47:28] -rw-r--r--. 2 boinc boinc    590104 Nov 23 03:39 input.tar.gz
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc         0 Nov 23 03:39 boinc_lockfile
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc      2785 Nov 23 03:39 pandaJob.out
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc    989784 Nov 23 03:40 agis_schedconf.cvmfs.json
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc   1526164 Nov 23 03:40 agis_ddmendpoints.agis.ALL.json
[2025-11-23 03:47:28] drwx------. 5 boinc boinc      4096 Nov 23 03:40 pilot3
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc       524 Nov 23 03:43 boinc_task_state.xml
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc      1006 Nov 23 03:44 memory_monitor_summary.json
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc     49916 Nov 23 03:44 log.47556137._005430.job.log.tgz.1
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc        95 Nov 23 03:46 pilot_heartbeat.json
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc     10356 Nov 23 03:46 heartbeat.json
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc        23 Nov 23 03:47 wrapper_checkpoint.txt
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc      8192 Nov 23 03:47 boinc_mmap_file
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc      4823 Nov 23 03:47 pilotlog.txt
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc    112061 Nov 23 03:47 log.47556137._005430.job.log.1
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc       186 Nov 23 03:47 output.list
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc       620 Nov 23 03:47 runtime_log
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc    184320 Nov 23 03:47 result.tar.gz
[2025-11-23 03:47:28] -rw-------. 1 boinc boinc       646 Nov 23 03:47 VjhNDmb4Ch8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqMIKDmrAJAFo.diag
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc      8636 Nov 23 03:47 runtime_log.err
[2025-11-23 03:47:28] -rw-r--r--. 1 boinc boinc     22627 Nov 23 03:47 stderr.txt
[2025-11-23 03:47:29] No HITS result produced
[2025-11-23 03:47:29]  *** Contents of shared directory: ***
[2025-11-23 03:47:29] total 399228
[2025-11-23 03:47:29] -rw-r--r--. 2 boinc boinc 408008784 Nov 23 03:39 ATLAS.root_0
[2025-11-23 03:47:29] -rw-r--r--. 2 boinc boinc     15847 Nov 23 03:39 start_atlas.sh
[2025-11-23 03:47:29] -rw-r--r--. 2 boinc boinc    590104 Nov 23 03:39 input.tar.gz
[2025-11-23 03:47:29] -rw-------. 1 boinc boinc    184320 Nov 23 03:47 result.tar.gz
03:47:30 (3516306): run_atlas exited; CPU time 77.496519
03:47:30 (3516306): called boinc_finish(0)

</stderr_txt>
]]>

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