Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:03:28 (1074057): wrapper (7.7.26015): starting
05:03:28 (1074057): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 05:03:28] Arguments: --nthreads 3
[2025-11-26 05:03:28] Threads: 3
[2025-11-26 05:03:28] Checking for CVMFS
[2025-11-26 05:03:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 05:03:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 05:03:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 05:03:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 05:03:29] 2.9.2.0 3836662 10760 92064 153307 3 81 34004189 36864000 0 130560 5 4010705 99.933 548682 492 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 05:03:29] CVMFS is ok
[2025-11-26 05:03:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 05:03:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 05:03:29] Further information can be found at the LHC@home message board.
[2025-11-26 05:03:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 05:03:29] Checking for apptainer binary...
[2025-11-26 05:03:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 05:03:29] Running /usr/bin/apptainer --version
[2025-11-26 05:03:29] apptainer version 1.4.1-1.1
[2025-11-26 05:03:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 05:03:29] thA327
[2025-11-26 05:03:29] apptainer works
[2025-11-26 05:03:29] Set ATHENA_PROC_NUMBER=3
[2025-11-26 05:03:29] Set ATHENA_CORE_NUMBER=3
[2025-11-26 05:03:29] Starting ATLAS job with PandaID=6895333825
[2025-11-26 05:03:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:14:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:14:33] 2025-11-26 12:14:03,709 | INFO     | update_server=False
[2025-11-26 13:14:33] 2025-11-26 12:14:03,709 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:14:33] 2025-11-26 12:14:03,709 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:14:33] 2025-11-26 12:14:03,709 | INFO     | aborting loop
[2025-11-26 13:14:33] 2025-11-26 12:14:03,709 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:14:33] 2025-11-26 12:14:03,817 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:14:33] 2025-11-26 12:14:04,233 | INFO     | all data control threads have been joined
[2025-11-26 13:14:33] 2025-11-26 12:14:04,618 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:14:33] 2025-11-26 12:14:04,715 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:04,715 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:04,715 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:04,815 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:04,815 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:04,868 | INFO     | all payload control threads have been joined
[2025-11-26 13:14:33] 2025-11-26 12:14:04,906 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:04,969 | INFO     | all job control threads have been joined
[2025-11-26 13:14:33] 2025-11-26 12:14:05,239 | INFO     | [data] control thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:05,392 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:05,393 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:05,407 | INFO     | [job] validate thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:05,439 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:05,823 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:05,874 | INFO     | [payload] control thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:05,975 | INFO     | [job] control thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:07,801 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:14:33] 2025-11-26 12:14:08,625 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:13,849 | INFO     | job.realtimelogging is not enabled
[2025-11-26 13:14:33] 2025-11-26 12:14:14,855 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:14:33] 2025-11-26 12:14:15,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140468802479936)>', '<ExcThread(monitor, started 140468146910976)>']
[2025-11-26 13:14:33] 2025-11-26 12:14:20,221 | INFO     | all workflow threads have been joined
[2025-11-26 13:14:33] 2025-11-26 12:14:20,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:14:33] 2025-11-26 12:14:20,222 | INFO     | traces error code: 0
[2025-11-26 13:14:33] 2025-11-26 12:14:20,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:14:33] 2025-11-26 12:14:33,497 | INFO     | PID=1077780 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:14:33] 2025-11-26 12:14:33,497 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:14:33] 2025-11-26 12:14:33,497 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:14:33] 2025-11-26 12:14:33,497 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:14:33] 2025-11-26 12:14:33,497 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:14:33] 2025-11-26 12:14:33,497 | INFO     | [monitor] control thread has ended
[2025-11-26 13:14:33] 2025-11-26 12:14:33,545 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:14:33] 2025-11-26 12:14:33,548 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:14:33] 2025-11-26 12:14:33,550 [wrapper] pilotpid: 1077780
[2025-11-26 13:14:33] 2025-11-26 12:14:33,552 [wrapper] Pilot exit status: 0
[2025-11-26 13:14:33] 2025-11-26 12:14:33,560 [wrapper] pandaids: 6895333825
[2025-11-26 13:14:33] 2025-11-26 12:14:33,575 [wrapper] cleanup supervisor_pilot 1134462 1077781
[2025-11-26 13:14:33] 2025-11-26 12:14:33,577 [wrapper] Test setup, not cleaning
[2025-11-26 13:14:33] 2025-11-26 12:14:33,580 [wrapper] apfmon messages muted
[2025-11-26 13:14:33] 2025-11-26 12:14:33,582 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:14:33] 2025-11-26 12:14:33,584 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:14:33]  *** Error codes and diagnostics ***
[2025-11-26 13:14:33]     "exeErrorCode": 0,
[2025-11-26 13:14:33]     "exeErrorDiag": "",
[2025-11-26 13:14:33]     "pilotErrorCode": 0,
[2025-11-26 13:14:33]     "pilotErrorDiag": "",
[2025-11-26 13:14:33]  *** Listing of results directory ***
[2025-11-26 13:14:33] total 1305260
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc    576529 Nov 22 02:38 pilot3.tar.gz
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc      5112 Nov 22 03:01 queuedata.json
[2025-11-26 13:14:33] -rwx------ 1 boinc boinc     36292 Nov 22 03:03 runpilot2-wrapper.sh
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc       100 Nov 26 05:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:14:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 05:03 run_atlas
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc       105 Nov 26 05:03 job.xml
[2025-11-26 13:14:33] -rw-r--r-- 2 boinc boinc 410304107 Nov 26 05:03 EVNT.47483658._000211.pool.root.1
[2025-11-26 13:14:33] -rw-r--r-- 2 boinc boinc    590099 Nov 26 05:03 input.tar.gz
[2025-11-26 13:14:33] -rw-r--r-- 2 boinc boinc     15847 Nov 26 05:03 start_atlas.sh
[2025-11-26 13:14:33] drwxrwx--x 2 boinc boinc      4096 Nov 26 05:03 shared
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc         0 Nov 26 05:03 boinc_setup_complete
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc      6447 Nov 26 05:03 init_data.xml
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc         0 Nov 26 05:03 boinc_lockfile
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc      2785 Nov 26 05:03 pandaJob.out
[2025-11-26 13:14:33] -rw------- 1 boinc boinc    991877 Nov 26 05:03 agis_schedconf.cvmfs.json
[2025-11-26 13:14:33] drwx------ 5 boinc boinc      4096 Nov 26 05:03 pilot3
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc       531 Nov 26 13:10 boinc_task_state.xml
[2025-11-26 13:14:33] -rw------- 1 boinc boinc 911750750 Nov 26 13:13 HITS.47556137._002074.pool.root.1
[2025-11-26 13:14:33] -rw------- 1 boinc boinc      1020 Nov 26 13:13 memory_monitor_summary.json
[2025-11-26 13:14:33] -rw------- 1 boinc boinc   1516240 Nov 26 13:13 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:14:33] -rw------- 1 boinc boinc   1170800 Nov 26 13:13 log.47556137._002074.job.log.tgz.1
[2025-11-26 13:14:33] -rw------- 1 boinc boinc        95 Nov 26 13:13 pilot_heartbeat.json
[2025-11-26 13:14:33] -rw------- 1 boinc boinc      8554 Nov 26 13:14 heartbeat.json
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc      8192 Nov 26 13:14 boinc_mmap_file
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc        28 Nov 26 13:14 wrapper_checkpoint.txt
[2025-11-26 13:14:33] -rw------- 1 boinc boinc       747 Nov 26 13:14 pilotlog.txt
[2025-11-26 13:14:33] -rw------- 1 boinc boinc   4148784 Nov 26 13:14 log.47556137._002074.job.log.1
[2025-11-26 13:14:33] -rw------- 1 boinc boinc       353 Nov 26 13:14 output.list
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc       620 Nov 26 13:14 runtime_log
[2025-11-26 13:14:33] -rw------- 1 boinc boinc   5335040 Nov 26 13:14 result.tar.gz
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc      8898 Nov 26 13:14 runtime_log.err
[2025-11-26 13:14:33] -rw------- 1 boinc boinc       665 Nov 26 13:14 YP1KDm78rg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmztHKDmWh1OLo.diag
[2025-11-26 13:14:33] -rw-r--r-- 1 boinc boinc      7509 Nov 26 13:14 stderr.txt
[2025-11-26 13:14:33] HITS file was successfully produced:
[2025-11-26 13:14:33] -rw------- 1 boinc boinc 911750750 Nov 26 13:13 shared/HITS.pool.root.1
[2025-11-26 13:14:33]  *** Contents of shared directory: ***
[2025-11-26 13:14:33] total 1296888
[2025-11-26 13:14:33] -rw-r--r-- 2 boinc boinc 410304107 Nov 26 05:03 ATLAS.root_0
[2025-11-26 13:14:33] -rw-r--r-- 2 boinc boinc    590099 Nov 26 05:03 input.tar.gz
[2025-11-26 13:14:33] -rw-r--r-- 2 boinc boinc     15847 Nov 26 05:03 start_atlas.sh
[2025-11-26 13:14:33] -rw------- 1 boinc boinc 911750750 Nov 26 13:13 HITS.pool.root.1
[2025-11-26 13:14:33] -rw------- 1 boinc boinc   5335040 Nov 26 13:14 result.tar.gz
13:14:34 (1074057): run_atlas exited; CPU time 86905.718924
13:14:34 (1074057): called boinc_finish(0)

</stderr_txt>
]]>

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