Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:21:56 (25806): wrapper (7.7.26015): starting
06:21:56 (25806): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:21:56] Arguments: --nthreads 8
[2025-11-26 06:21:56] Threads: 8
[2025-11-26 06:21:56] Checking for CVMFS
[2025-11-26 06:21:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:21:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:21:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:21:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:21:59] 2.11.2.0 16837 284963 138056 153311 1 75 20514293 25165824 2124 130560 11 121415756 99.870 74266751 3397 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 06:21:59] CVMFS is ok
[2025-11-26 06:21:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:21:59] Checking for apptainer binary...
[2025-11-26 06:21:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:21:59] Running /usr/bin/apptainer --version
[2025-11-26 06:21:59] apptainer version 1.3.2-1.el7
[2025-11-26 06:21:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:22:14] cg-vwn322.simple-grid.lan
[2025-11-26 06:22:14] apptainer works
[2025-11-26 06:22:14] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:22:14] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:22:15] Starting ATLAS job with PandaID=6891569551
[2025-11-26 06:22:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:13:15]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:13:15] 2025-11-27 05:12:29,022 | INFO     | time since job start (85573s) is within the limit (172800.0s)
[2025-11-27 06:13:15] 2025-11-27 05:12:31,029 | INFO     | time since job start (85575s) is within the limit (172800.0s)
[2025-11-27 06:13:15] 2025-11-27 05:12:31,167 | INFO     | monitor loop #5765: job 0:6891569551 is in state 'finished'
[2025-11-27 06:13:15] 2025-11-27 05:12:31,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:13:15] 2025-11-27 05:12:33,042 | INFO     | time since job start (85577s) is within the limit (172800.0s)
[2025-11-27 06:13:15] 2025-11-27 05:12:33,672 | INFO     | monitor loop #5766: job 0:6891569551 is in state 'finished'
[2025-11-27 06:13:15] 2025-11-27 05:12:33,672 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:13:15] 2025-11-27 05:12:35,058 | INFO     | time since job start (85579s) is within the limit (172800.0s)
[2025-11-27 06:13:15] 2025-11-27 05:12:36,177 | INFO     | monitor loop #5767: job 0:6891569551 is in state 'finished'
[2025-11-27 06:13:15] 2025-11-27 05:12:36,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:13:15] 2025-11-27 05:12:37,065 | INFO     | time since job start (85581s) is within the limit (172800.0s)
[2025-11-27 06:13:15] 2025-11-27 05:12:38,251 | INFO     | PID=29642 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 06:13:15] 2025-11-27 05:12:38,251 | INFO     | .. there are 9 such processes running
[2025-11-27 06:13:15] 2025-11-27 05:12:38,479 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 06:13:15] 2025-11-27 05:12:38,480 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 06:13:15] 2025-11-27 05:12:38,481 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6891569551/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:13:15] 2025-11-27 05:12:38,482 | INFO     | extracted standard info from prmon json
[2025-11-27 06:13:15] 2025-11-27 05:12:38,482 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:13:15] 2025-11-27 05:12:38,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:13:15] 2025-11-27 05:12:38,508 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:13:15] 2025-11-27 05:12:38,511 | INFO     | sum of square deviations: 838167117318.9946
[2025-11-27 06:13:15] 2025-11-27 05:12:38,573 | INFO     | sum of deviations: 3238362761937.958
[2025-11-27 06:13:15] 2025-11-27 05:12:38,573 | INFO     | mean x: 1764177740.080402
[2025-11-27 06:13:15] 2025-11-27 05:12:38,573 | INFO     | mean y: 2839199.312993539
[2025-11-27 06:13:15] 2025-11-27 05:12:38,573 | INFO     | intersect: -6813280618.403417
[2025-11-27 06:13:15] 2025-11-27 05:12:38,575 | INFO     | chi2: 20.340593529238106
[2025-11-27 06:13:15] 2025-11-27 05:12:38,577 | INFO     | sum of square deviations: 829174421673.138
[2025-11-27 06:13:15] 2025-11-27 05:12:38,633 | INFO     | sum of deviations: 3712514633063.862
[2025-11-27 06:13:15] 2025-11-27 05:12:38,633 | INFO     | mean x: 1764177587.5842938
[2025-11-27 06:13:15] 2025-11-27 05:12:38,634 | INFO     | mean y: 2847239.543948127
[2025-11-27 06:13:15] 2025-11-27 05:12:38,634 | INFO     | intersect: -7896015699.346649
[2025-11-27 06:13:15] 2025-11-27 05:12:38,635 | INFO     | chi2: 16.957554710046654
[2025-11-27 06:13:15] 2025-11-27 05:12:38,636 | INFO     | current chi2=16.957554710046654 (change=16.63195724514421 %)
[2025-11-27 06:13:15] 2025-11-27 05:12:38,636 | INFO     | right removable region: 1387
[2025-11-27 06:13:15] 2025-11-27 05:12:38,638 | INFO     | sum of square deviations: 829173503623.1377
[2025-11-27 06:13:15] 2025-11-27 05:12:38,695 | INFO     | monitor loop #5768: job 0:6891569551 is in state 'finished'
[2025-11-27 06:13:15] 2025-11-27 05:12:38,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:13:15] 2025-11-27 05:12:38,724 | INFO     | sum of deviations: 2679482645491.8
[2025-11-27 06:13:15] 2025-11-27 05:12:38,724 | INFO     | mean x: 1764177892.5842938
[2025-11-27 06:13:15] 2025-11-27 05:12:38,724 | INFO     | mean y: 2848675.0273775216
[2025-11-27 06:13:15] 2025-11-27 05:12:38,724 | INFO     | intersect: -5698110202.800427
[2025-11-27 06:13:15] 2025-11-27 05:12:38,726 | INFO     | chi2: 16.06348343499142
[2025-11-27 06:13:15] 2025-11-27 05:12:38,726 | INFO     | current chi2=16.06348343499142 (change=21.027459636802913 %)
[2025-11-27 06:13:15] 2025-11-27 05:12:38,726 | INFO     | left removable region: 10
[2025-11-27 06:13:15] 2025-11-27 05:12:38,728 | INFO     | sum of square deviations: 809615576616.1027
[2025-11-27 06:13:15] 2025-11-27 05:12:38,798 | INFO     | sum of deviations: 2763700371090.021
[2025-11-27 06:13:15] 2025-11-27 05:12:38,798 | INFO     | mean x: 1764177862.0929556
[2025-11-27 06:13:15] 2025-11-27 05:12:38,798 | INFO     | mean y: 2867126.4763979665
[2025-11-27 06:13:15] 2025-11-27 05:12:38,798 | INFO     | intersect: -6019323099.301588
[2025-11-27 06:13:15] 2025-11-27 05:12:38,800 | INFO     | chi2: 8.552635225155012
[2025-11-27 06:13:15] 2025-11-27 05:12:38,800 | INFO     | current memory leak: 3.41 B/s (using 1377 data points, chi2=8.55)
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | ..............................
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | . Timing measurements:
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | . get job = 0 s
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | . initial setup = 8 s
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | . payload setup = 154 s
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | . stage-in = 0 s
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | . payload execution = 85122 s
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | . stage-out = 4 s
[2025-11-27 06:13:15] 2025-11-27 05:12:38,802 | INFO     | . log creation = 2 s
[2025-11-27 06:13:15] 2025-11-27 05:12:38,803 | INFO     | ..............................
[2025-11-27 06:13:15] 2025-11-27 05:12:38,938 | INFO     | 
[2025-11-27 06:13:15] 2025-11-27 05:12:38,938 | INFO     | job summary report
[2025-11-27 06:13:15] 2025-11-27 05:12:38,938 | INFO     | --------------------------------------------------
[2025-11-27 06:13:15] 2025-11-27 05:12:38,938 | INFO     | PanDA job id: 6891569551
[2025-11-27 06:13:15] 2025-11-27 05:12:38,938 | INFO     | task id: 47493068
[2025-11-27 06:13:15] 2025-11-27 05:12:38,938 | INFO     | errors: (none)
[2025-11-27 06:13:15] 2025-11-27 05:12:38,938 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:13:15] 2025-11-27 05:12:38,938 | INFO     | pilot state: finished 
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | transexitcode: 0
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | exeerrorcode: 0
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | exeerrordiag: 
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | exitcode: 0
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | exitmsg: OK
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | cpuconsumptiontime: 321109 s
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | nevents: 1000
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | neventsw: 0
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | pid: 3815
[2025-11-27 06:13:15] 2025-11-27 05:12:38,939 | INFO     | pgrp: 3815
[2025-11-27 06:13:15] 2025-11-27 05:12:38,940 | INFO     | corecount: 8
[2025-11-27 06:13:15] 2025-11-27 05:12:38,940 | INFO     | event service: False
[2025-11-27 06:13:15] 2025-11-27 05:12:38,940 | INFO     | sizes: {0: 2284077, 1: 2284332, 12: 2284332, 23: 2284360, 34: 2284388, 44: 2284416, 55: 2284572, 66: 2284600, 77: 2284628, 87: 2284684, 90: 2284974, 98: 2285282, 8
[2025-11-27 06:13:15] 2025-11-27 05:12:38,940 | INFO     | --------------------------------------------------
[2025-11-27 06:13:15] 2025-11-27 05:12:38,940 | INFO     | 
[2025-11-27 06:13:15] 2025-11-27 05:12:38,940 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-27 06:13:15] 2025-11-27 05:12:39,256 | INFO     | time since job start (85583s) is within the limit (172800.0s)
[2025-11-27 06:13:15] 2025-11-27 05:12:39,555 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,555 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,555 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,555 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,557 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,557 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:13:15] 2025-11-27 05:12:39,557 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,557 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:13:15] 2025-11-27 05:12:39,557 | INFO     | job 6891569551 has completed (purged errors)
[2025-11-27 06:13:15] 2025-11-27 05:12:39,557 | INFO     | overall cleanup function is called
[2025-11-27 06:13:15] 2025-11-27 05:12:40,573 | INFO     | --- collectZombieJob: --- 10, [3815]
[2025-11-27 06:13:15] 2025-11-27 05:12:40,573 | INFO     | zombie collector waiting for pid 3815
[2025-11-27 06:13:15] 2025-11-27 05:12:40,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:13:15] 2025-11-27 05:12:40,573 | INFO     | collected zombie processes
[2025-11-27 06:13:15] 2025-11-27 05:12:40,573 | INFO     | will attempt to kill all subprocesses of pid=3815
[2025-11-27 06:13:15] 2025-11-27 05:12:40,685 | INFO     | process IDs to be killed: [3815] (in reverse order)
[2025-11-27 06:13:15] 2025-11-27 05:12:41,366 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:13:15] 2025-11-27 05:12:41,366 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:13:15] 2025-11-27 05:12:41,369 | INFO     | did not find any defunct processes belonging to 3815
[2025-11-27 06:13:15] 2025-11-27 05:12:41,372 | INFO     | did not find any defunct processes belonging to 3815
[2025-11-27 06:13:15] 2025-11-27 05:12:41,407 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:13:15] 2025-11-27 05:12:41,407 | INFO     | ready for new job
[2025-11-27 06:13:15] 2025-11-27 05:12:41,407 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:13:15] 2025-11-27 05:12:41,412 | INFO     | ***************************************
[2025-11-27 06:13:15] 2025-11-27 05:12:41,412 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:13:15] 2025-11-27 05:12:41,413 | INFO     | ***************************************
[2025-11-27 06:13:15] 2025-11-27 05:12:41,413 | INFO     | 
[2025-11-27 06:13:15] 2025-11-27 05:12:41,413 | INFO     | pilot is running in a VM
[2025-11-27 06:13:15] 2025-11-27 05:12:41,413 | INFO     | architecture information:
[2025-11-27 06:13:15] 2025-11-27 05:12:41,419 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:13:15] 2025-11-27 05:12:41,589 | INFO     | cat /etc/os-release:
[2025-11-27 06:13:15] NAME="CentOS Linux"
[2025-11-27 06:13:15] VERSION="7 (Core)"
[2025-11-27 06:13:15] ID="centos"
[2025-11-27 06:13:15] ID_LIKE="rhel fedora"
[2025-11-27 06:13:15] VERSION_ID="7"
[2025-11-27 06:13:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:13:15] ANSI_COLOR="0;31"
[2025-11-27 06:13:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:13:15] HOME_URL="https://www.centos.org/"
[2025-11-27 06:13:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:13:15] 
[2025-11-27 06:13:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:13:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:13:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:13:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:13:15] 
[2025-11-27 06:13:15] 2025-11-27 05:12:41,590 | INFO     | ***************************************
[2025-11-27 06:13:15] 2025-11-27 05:12:42,093 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-27 06:13:15] 2025-11-27 05:12:42,354 | INFO     | sufficient remaining disk space (495386099712 B)
[2025-11-27 06:13:15] 2025-11-27 05:12:42,355 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:13:15] 2025-11-27 05:12:42,355 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:13:15] 2025-11-27 05:12:42,355 | INFO     | update_server=False
[2025-11-27 06:13:15] 2025-11-27 05:12:42,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:13:15] 2025-11-27 05:12:42,356 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:13:15] 2025-11-27 05:12:42,359 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:13:15] 2025-11-27 05:12:42,359 | INFO     | aborting loop
[2025-11-27 06:13:15] 2025-11-27 05:12:42,615 | INFO     | all job control threads have been joined
[2025-11-27 06:13:15] 2025-11-27 05:12:43,058 | INFO     | all data control threads have been joined
[2025-11-27 06:13:15] 2025-11-27 05:12:43,214 | INFO     | all payload control threads have been joined
[2025-11-27 06:13:15] 2025-11-27 05:12:43,361 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:43,365 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:43,475 | INFO     | [job] validate thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:43,621 | INFO     | [job] control thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:43,759 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:43,805 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:43,950 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:13:15] 2025-11-27 05:12:44,064 | INFO     | [data] control thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:44,220 | INFO     | [payload] control thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:44,363 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:44,444 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:44,473 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:44,477 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:44,503 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:44,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:44,956 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:45,440 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:13:15] 2025-11-27 05:12:45,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:13:15] 2025-11-27 05:12:49,557 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:13:15] 2025-11-27 05:12:50,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140655409825600)>', '<ExcThread(monitor, started 140654608905984)>']
[2025-11-27 06:13:15] 2025-11-27 05:12:55,758 | INFO     | all workflow threads have been joined
[2025-11-27 06:13:15] 2025-11-27 05:12:55,758 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:13:15] 2025-11-27 05:12:55,758 | INFO     | traces error code: 0
[2025-11-27 06:13:15] 2025-11-27 05:12:55,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:13:15] 2025-11-27 05:13:12,416 | INFO     | PID=29642 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 06:13:15] 2025-11-27 05:13:12,416 | INFO     | .. there are 9 such processes running
[2025-11-27 06:13:15] 2025-11-27 05:13:12,417 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:13:15] 2025-11-27 05:13:12,417 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:13:15] 2025-11-27 05:13:12,417 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:13:15] 2025-11-27 05:13:12,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:13:15] 2025-11-27 05:13:12,417 | INFO     | [monitor] control thread has ended
[2025-11-27 06:13:15] 2025-11-27 05:13:12,619 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:13:15] 2025-11-27 05:13:12,717 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:13:15] 2025-11-27 05:13:12,794 [wrapper] pilotpid: 29642
[2025-11-27 06:13:15] 2025-11-27 05:13:12,905 [wrapper] Pilot exit status: 0
[2025-11-27 06:13:15] 2025-11-27 05:13:13,310 [wrapper] pandaids: 6891569551
[2025-11-27 06:13:15] 2025-11-27 05:13:13,928 [wrapper] cleanup supervisor_pilot 14943 29643
[2025-11-27 06:13:15] 2025-11-27 05:13:13,984 [wrapper] Test setup, not cleaning
[2025-11-27 06:13:15] 2025-11-27 05:13:14,042 [wrapper] apfmon messages muted
[2025-11-27 06:13:15] 2025-11-27 05:13:14,116 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:13:15] 2025-11-27 05:13:14,159 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:13:15]  *** Error codes and diagnostics ***
[2025-11-27 06:13:15]     "exeErrorCode": 0,
[2025-11-27 06:13:15]     "exeErrorDiag": "",
[2025-11-27 06:13:15]     "pilotErrorCode": 0,
[2025-11-27 06:13:15]     "pilotErrorDiag": "",
[2025-11-27 06:13:15]  *** Listing of results directory ***
[2025-11-27 06:13:15] total 1314364
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:35 queuedata.json
[2025-11-27 06:13:15] -rwx------. 1 boinc boinc     36292 Nov 18 16:37 runpilot2-wrapper.sh
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc       100 Nov 26 06:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:13:15] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 06:21 run_atlas
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc       105 Nov 26 06:21 job.xml
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc      6390 Nov 26 06:21 init_data.xml
[2025-11-27 06:13:15] -rw-r--r--. 2 boinc boinc 406570383 Nov 26 06:21 EVNT.47493065._000208.pool.root.1
[2025-11-27 06:13:15] -rw-r--r--. 2 boinc boinc     15120 Nov 26 06:21 start_atlas.sh
[2025-11-27 06:13:15] drwxrwx--x. 2 boinc boinc        68 Nov 26 06:21 shared
[2025-11-27 06:13:15] -rw-r--r--. 2 boinc boinc    590095 Nov 26 06:21 input.tar.gz
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc         0 Nov 26 06:21 boinc_lockfile
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc      2773 Nov 26 06:22 pandaJob.out
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc    991877 Nov 26 06:26 agis_schedconf.cvmfs.json
[2025-11-27 06:13:15] drwx------. 5 boinc boinc      4096 Nov 26 06:26 pilot3
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc       533 Nov 27 05:51 boinc_task_state.xml
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc 907748982 Nov 27 06:09 HITS.47493068._002077.pool.root.1
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc      1031 Nov 27 06:10 memory_monitor_summary.json
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc   1516240 Nov 27 06:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc   2462982 Nov 27 06:10 log.47493068._002077.job.log.tgz.1
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc      8626 Nov 27 06:12 heartbeat.json
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc        95 Nov 27 06:12 pilot_heartbeat.json
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc      8192 Nov 27 06:13 boinc_mmap_file
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc        29 Nov 27 06:13 wrapper_checkpoint.txt
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc       820 Nov 27 06:13 pilotlog.txt
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc  11378122 Nov 27 06:13 log.47493068._002077.job.log.1
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc       353 Nov 27 06:13 output.list
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc       620 Nov 27 06:13 runtime_log
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc  13864960 Nov 27 06:13 result.tar.gz
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc      8703 Nov 27 06:13 runtime_log.err
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc       662 Nov 27 06:13 fBBMDmewcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBaFKDmtAVium.diag
[2025-11-27 06:13:15] -rw-r--r--. 1 boinc boinc     21489 Nov 27 06:13 stderr.txt
[2025-11-27 06:13:15] HITS file was successfully produced:
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc 907748982 Nov 27 06:09 shared/HITS.pool.root.1
[2025-11-27 06:13:15]  *** Contents of shared directory: ***
[2025-11-27 06:13:15] total 1297656
[2025-11-27 06:13:15] -rw-r--r--. 2 boinc boinc 406570383 Nov 26 06:21 ATLAS.root_0
[2025-11-27 06:13:15] -rw-r--r--. 2 boinc boinc     15120 Nov 26 06:21 start_atlas.sh
[2025-11-27 06:13:15] -rw-r--r--. 2 boinc boinc    590095 Nov 26 06:21 input.tar.gz
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc 907748982 Nov 27 06:09 HITS.pool.root.1
[2025-11-27 06:13:15] -rw-------. 1 boinc boinc  13864960 Nov 27 06:13 result.tar.gz
06:13:17 (25806): run_atlas exited; CPU time 321689.104991
06:13:17 (25806): called boinc_finish(0)

</stderr_txt>
]]>

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