Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:39:21 (3981857): wrapper (7.7.26015): starting
08:39:21 (3981857): wrapper: running run_atlas (--nthreads 2)
[2025-11-26 08:39:21] Arguments: --nthreads 2
[2025-11-26 08:39:21] Threads: 2
[2025-11-26 08:39:21] Checking for CVMFS
[2025-11-26 08:39:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:39:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:39:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:39:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:39:22] 2.9.2.0 2634804 11001 59244 153314 3 81 35473537 36864001 0 130560 1 3536868 99.927 564032 1054 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 08:39:22] CVMFS is ok
[2025-11-26 08:39:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:39:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:39:22] Further information can be found at the LHC@home message board.
[2025-11-26 08:39:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:39:22] Checking for apptainer binary...
[2025-11-26 08:39:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:39:22] Running /usr/bin/apptainer --version
[2025-11-26 08:39:22] apptainer version 1.4.1-1.1
[2025-11-26 08:39:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:39:22] thA389
[2025-11-26 08:39:22] apptainer works
[2025-11-26 08:39:22] Set ATHENA_PROC_NUMBER=2
[2025-11-26 08:39:22] Set ATHENA_CORE_NUMBER=2
[2025-11-26 08:39:22] Starting ATLAS job with PandaID=6895333056
[2025-11-26 08:39:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:03:44]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:03:44] ID_LIKE="rhel fedora"
[2025-11-26 21:03:44] VERSION_ID="7"
[2025-11-26 21:03:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:03:44] ANSI_COLOR="0;31"
[2025-11-26 21:03:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:03:44] HOME_URL="https://www.centos.org/"
[2025-11-26 21:03:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:03:44] 
[2025-11-26 21:03:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:03:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:03:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:03:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:03:44] 
[2025-11-26 21:03:44] 2025-11-26 20:03:05,532 | INFO     | ***************************************
[2025-11-26 21:03:44] 2025-11-26 20:03:06,035 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 21:03:44] 2025-11-26 20:03:06,065 | INFO     | sufficient remaining disk space (823837851648 B)
[2025-11-26 21:03:44] 2025-11-26 20:03:06,066 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:03:44] 2025-11-26 20:03:06,066 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:03:44] 2025-11-26 20:03:06,066 | INFO     | update_server=False
[2025-11-26 21:03:44] 2025-11-26 20:03:06,067 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:03:44] 2025-11-26 20:03:06,067 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:03:44] 2025-11-26 20:03:06,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:03:44] 2025-11-26 20:03:06,206 | INFO     | all data control threads have been joined
[2025-11-26 21:03:44] 2025-11-26 20:03:06,422 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 21:03:44] 2025-11-26 20:03:06,423 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 21:03:44] 2025-11-26 20:03:06,423 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:03:44] 2025-11-26 20:03:06,423 | INFO     | will abort loop
[2025-11-26 21:03:44] 2025-11-26 20:03:06,471 | INFO     | all payload control threads have been joined
[2025-11-26 21:03:44] 2025-11-26 20:03:06,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:03:44] 2025-11-26 20:03:06,967 | INFO     | all job control threads have been joined
[2025-11-26 21:03:44] 2025-11-26 20:03:07,068 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:07,073 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:07,207 | INFO     | [data] control thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:07,395 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:07,429 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:07,477 | INFO     | [payload] control thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:07,637 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:07,708 | INFO     | [job] validate thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:07,963 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:07,973 | INFO     | [job] control thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:08,043 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:08,074 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:08,195 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:08,425 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:08,425 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:10,808 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:03:44] 2025-11-26 20:03:36,330 | INFO     | PID=3985566 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:03:44] 2025-11-26 20:03:36,330 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:03:44] 2025-11-26 20:03:36,330 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:03:44] 2025-11-26 20:03:36,330 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:03:44] 2025-11-26 20:03:37,502 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:03:44] 2025-11-26 20:03:39,060 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831464232768)>', '<ExcThread(monitor, started 139830931461888)>']
[2025-11-26 21:03:44] 2025-11-26 20:03:39,346 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:03:44] 2025-11-26 20:03:39,347 | INFO     | [monitor] control thread has ended
[2025-11-26 21:03:44] 2025-11-26 20:03:44,078 | INFO     | all workflow threads have been joined
[2025-11-26 21:03:44] 2025-11-26 20:03:44,079 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:03:44] 2025-11-26 20:03:44,079 | INFO     | traces error code: 0
[2025-11-26 21:03:44] 2025-11-26 20:03:44,080 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:03:44] 2025-11-26 20:03:44,121 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:03:44] 2025-11-26 20:03:44,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:03:44] 2025-11-26 20:03:44,126 [wrapper] pilotpid: 3985566
[2025-11-26 21:03:44] 2025-11-26 20:03:44,127 [wrapper] Pilot exit status: 0
[2025-11-26 21:03:44] 2025-11-26 20:03:44,133 [wrapper] pandaids: 6895333056
[2025-11-26 21:03:44] 2025-11-26 20:03:44,144 [wrapper] cleanup supervisor_pilot 4069087 3985567
[2025-11-26 21:03:44] 2025-11-26 20:03:44,146 [wrapper] Test setup, not cleaning
[2025-11-26 21:03:44] 2025-11-26 20:03:44,148 [wrapper] apfmon messages muted
[2025-11-26 21:03:44] 2025-11-26 20:03:44,150 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:03:44] 2025-11-26 20:03:44,152 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:03:44]  *** Error codes and diagnostics ***
[2025-11-26 21:03:44]     "exeErrorCode": 0,
[2025-11-26 21:03:44]     "exeErrorDiag": "",
[2025-11-26 21:03:44]     "pilotErrorCode": 0,
[2025-11-26 21:03:44]     "pilotErrorDiag": "",
[2025-11-26 21:03:44]  *** Listing of results directory ***
[2025-11-26 21:03:44] total 1322816
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc    576529 Nov 22 01:28 pilot3.tar.gz
[2025-11-26 21:03:44] -rwx------ 1 boinc boinc     36292 Nov 22 02:04 runpilot2-wrapper.sh
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc      5112 Nov 22 02:04 queuedata.json
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc       100 Nov 26 08:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:03:44] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 08:39 run_atlas
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc       105 Nov 26 08:39 job.xml
[2025-11-26 21:03:44] -rw-r--r-- 2 boinc boinc 411870380 Nov 26 08:39 EVNT.47483658._000197.pool.root.1
[2025-11-26 21:03:44] -rw-r--r-- 2 boinc boinc    590098 Nov 26 08:39 input.tar.gz
[2025-11-26 21:03:44] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:39 start_atlas.sh
[2025-11-26 21:03:44] drwxrwx--x 2 boinc boinc      4096 Nov 26 08:39 shared
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:39 boinc_setup_complete
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc      6283 Nov 26 08:39 init_data.xml
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:39 boinc_lockfile
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc      2785 Nov 26 08:39 pandaJob.out
[2025-11-26 21:03:44] -rw------- 1 boinc boinc    991877 Nov 26 08:39 agis_schedconf.cvmfs.json
[2025-11-26 21:03:44] drwx------ 5 boinc boinc      4096 Nov 26 08:39 pilot3
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc       531 Nov 26 21:00 boinc_task_state.xml
[2025-11-26 21:03:44] -rw------- 1 boinc boinc 923811670 Nov 26 21:02 HITS.47556137._001960.pool.root.1
[2025-11-26 21:03:44] -rw------- 1 boinc boinc      1022 Nov 26 21:02 memory_monitor_summary.json
[2025-11-26 21:03:44] -rw------- 1 boinc boinc        95 Nov 26 21:02 pilot_heartbeat.json
[2025-11-26 21:03:44] -rw------- 1 boinc boinc   1516240 Nov 26 21:02 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:03:44] -rw------- 1 boinc boinc   1225809 Nov 26 21:02 log.47556137._001960.job.log.tgz.1
[2025-11-26 21:03:44] -rw------- 1 boinc boinc      8560 Nov 26 21:03 heartbeat.json
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc        28 Nov 26 21:03 wrapper_checkpoint.txt
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc      8192 Nov 26 21:03 boinc_mmap_file
[2025-11-26 21:03:44] -rw------- 1 boinc boinc      4938 Nov 26 21:03 pilotlog.txt
[2025-11-26 21:03:44] -rw------- 1 boinc boinc   6260789 Nov 26 21:03 log.47556137._001960.job.log.1
[2025-11-26 21:03:44] -rw------- 1 boinc boinc       353 Nov 26 21:03 output.list
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc       620 Nov 26 21:03 runtime_log
[2025-11-26 21:03:44] -rw------- 1 boinc boinc   7505920 Nov 26 21:03 result.tar.gz
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc      8898 Nov 26 21:03 runtime_log.err
[2025-11-26 21:03:44] -rw------- 1 boinc boinc       665 Nov 26 21:03 rQfMDmuDrg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcpJKDmzO56Cn.diag
[2025-11-26 21:03:44] -rw-r--r-- 1 boinc boinc      8821 Nov 26 21:03 stderr.txt
[2025-11-26 21:03:44] HITS file was successfully produced:
[2025-11-26 21:03:44] -rw------- 1 boinc boinc 923811670 Nov 26 21:02 shared/HITS.pool.root.1
[2025-11-26 21:03:44]  *** Contents of shared directory: ***
[2025-11-26 21:03:44] total 1312316
[2025-11-26 21:03:44] -rw-r--r-- 2 boinc boinc 411870380 Nov 26 08:39 ATLAS.root_0
[2025-11-26 21:03:44] -rw-r--r-- 2 boinc boinc    590098 Nov 26 08:39 input.tar.gz
[2025-11-26 21:03:44] -rw-r--r-- 2 boinc boinc     15847 Nov 26 08:39 start_atlas.sh
[2025-11-26 21:03:44] -rw------- 1 boinc boinc 923811670 Nov 26 21:02 HITS.pool.root.1
[2025-11-26 21:03:44] -rw------- 1 boinc boinc   7505920 Nov 26 21:03 result.tar.gz
21:03:45 (3981857): run_atlas exited; CPU time 88424.741131
21:03:45 (3981857): called boinc_finish(0)

</stderr_txt>
]]>

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