Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:13:54 (3349269): wrapper (7.7.26015): starting
16:13:54 (3349269): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 16:13:54] Arguments: --nthreads 3
[2025-11-23 16:13:54] Threads: 3
[2025-11-23 16:13:54] Checking for CVMFS
[2025-11-23 16:13:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 16:13:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 16:13:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 16:13:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 16:13:54] 2.9.2.0 2932062 325 67416 153212 3 57 34863450 36864000 0 130560 0 1226678 99.998 13139 19237 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 16:13:54] CVMFS is ok
[2025-11-23 16:13:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 16:13:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 16:13:54] Further information can be found at the LHC@home message board.
[2025-11-23 16:13:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 16:13:54] Checking for apptainer binary...
[2025-11-23 16:13:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 16:13:54] Running /usr/bin/apptainer --version
[2025-11-23 16:13:54] apptainer version 1.4.1-1.1
[2025-11-23 16:13:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 16:13:54] thA335
[2025-11-23 16:13:54] apptainer works
[2025-11-23 16:13:54] Set ATHENA_PROC_NUMBER=3
[2025-11-23 16:13:54] Set ATHENA_CORE_NUMBER=3
[2025-11-23 16:13:54] Starting ATLAS job with PandaID=6895340361
[2025-11-23 16:13:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 16:18:09]  *** The last 200 lines of the pilot log: ***
[2025-11-23 16:18:09] 2025-11-23 15:17:13,642 | INFO     | 
[2025-11-23 16:18:09] 2025-11-23 15:17:13,642 | INFO     | architecture information:
[2025-11-23 16:18:09] 2025-11-23 15:17:13,642 | INFO     | executing command: cat /etc/os-release
[2025-11-23 16:18:09] 2025-11-23 15:17:13,652 | INFO     | cat /etc/os-release:
[2025-11-23 16:18:09] NAME="CentOS Linux"
[2025-11-23 16:18:09] VERSION="7 (Core)"
[2025-11-23 16:18:09] ID="centos"
[2025-11-23 16:18:09] ID_LIKE="rhel fedora"
[2025-11-23 16:18:09] VERSION_ID="7"
[2025-11-23 16:18:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 16:18:09] ANSI_COLOR="0;31"
[2025-11-23 16:18:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 16:18:09] HOME_URL="https://www.centos.org/"
[2025-11-23 16:18:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 16:18:09] 
[2025-11-23 16:18:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 16:18:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 16:18:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 16:18:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 16:18:09] 
[2025-11-23 16:18:09] 2025-11-23 15:17:13,653 | INFO     | ***************************************
[2025-11-23 16:18:09] 2025-11-23 15:17:14,156 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 16:18:09] 2025-11-23 15:17:14,170 | INFO     | sufficient remaining disk space (826874527744 B)
[2025-11-23 16:18:09] 2025-11-23 15:17:14,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 16:18:09] 2025-11-23 15:17:14,170 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 16:18:09] 2025-11-23 15:17:14,170 | INFO     | update_server=False
[2025-11-23 16:18:09] 2025-11-23 15:17:14,170 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 16:18:09] 2025-11-23 15:17:14,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:18:09] 2025-11-23 15:17:14,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 16:18:09] 2025-11-23 15:17:14,529 | INFO     | all data control threads have been joined
[2025-11-23 16:18:09] 2025-11-23 15:17:14,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:18:09] 2025-11-23 15:17:14,690 | INFO     | aborting loop
[2025-11-23 16:18:09] 2025-11-23 15:17:14,724 | INFO     | all job control threads have been joined
[2025-11-23 16:18:09] 2025-11-23 15:17:14,773 | INFO     | all payload control threads have been joined
[2025-11-23 16:18:09] 2025-11-23 15:17:15,176 | INFO     | [job] queue monitor thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,177 | INFO     | [job] retrieve thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,324 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,488 | INFO     | [data] copytool_in thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,535 | INFO     | [data] control thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,696 | INFO     | [job] job monitor thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,730 | INFO     | [job] control thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,768 | INFO     | [job] validate thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,778 | INFO     | [payload] control thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,795 | INFO     | [payload] failed_post thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,856 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:15,911 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:16,177 | INFO     | [data] copytool_out thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:16,430 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 16:18:09] 2025-11-23 15:17:16,626 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:16,675 | INFO     | [payload] validate_post thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:20,437 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 16:18:09] 2025-11-23 15:17:44,335 | INFO     | PID=3353019 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 16:18:09] 2025-11-23 15:17:44,335 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 16:18:09] 2025-11-23 15:17:44,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 16:18:09] 2025-11-23 15:17:44,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 16:18:09] 2025-11-23 15:18:03,455 | INFO     | [monitor] cgroup control has ended
[2025-11-23 16:18:09] 2025-11-23 15:18:04,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787545376576)>', '<ExcThread(monitor, started 139787176482560)>']
[2025-11-23 16:18:09] 2025-11-23 15:18:04,436 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 16:18:09] 2025-11-23 15:18:04,436 | INFO     | [monitor] control thread has ended
[2025-11-23 16:18:09] 2025-11-23 15:18:09,313 | INFO     | all workflow threads have been joined
[2025-11-23 16:18:09] 2025-11-23 15:18:09,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 16:18:09] 2025-11-23 15:18:09,314 | INFO     | traces error code: 0
[2025-11-23 16:18:09] 2025-11-23 15:18:09,314 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 16:18:09] 2025-11-23 15:18:09,403 [wrapper] ==== pilot stdout END ====
[2025-11-23 16:18:09] 2025-11-23 15:18:09,406 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 16:18:09] 2025-11-23 15:18:09,409 [wrapper] pilotpid: 3353019
[2025-11-23 16:18:09] 2025-11-23 15:18:09,411 [wrapper] Pilot exit status: 0
[2025-11-23 16:18:09] 2025-11-23 15:18:09,418 [wrapper] pandaids: 6895340361
[2025-11-23 16:18:09] 2025-11-23 15:18:09,436 [wrapper] cleanup supervisor_pilot 3353025 3353020
[2025-11-23 16:18:09] 2025-11-23 15:18:09,438 [wrapper] Test setup, not cleaning
[2025-11-23 16:18:09] 2025-11-23 15:18:09,441 [wrapper] apfmon messages muted
[2025-11-23 16:18:09] 2025-11-23 15:18:09,443 [wrapper] ==== wrapper stdout END ====
[2025-11-23 16:18:09] 2025-11-23 15:18:09,446 [wrapper] ==== wrapper stderr END ====
[2025-11-23 16:18:09]  *** Error codes and diagnostics ***
[2025-11-23 16:18:09]     "exeErrorCode": 65,
[2025-11-23 16:18:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 16:18:09]     "pilotErrorCode": 1305,
[2025-11-23 16:18:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 16:18:09]  *** Listing of results directory ***
[2025-11-23 16:18:09] total 405588
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc    576529 Nov 22 13:54 pilot3.tar.gz
[2025-11-23 16:18:09] -rwx------ 1 boinc boinc     36292 Nov 22 14:12 runpilot2-wrapper.sh
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc      5112 Nov 22 14:12 queuedata.json
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc       100 Nov 23 16:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 16:18:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 16:13 run_atlas
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc       105 Nov 23 16:13 job.xml
[2025-11-23 16:18:09] -rw-r--r-- 2 boinc boinc 411129489 Nov 23 16:13 EVNT.47483658._000382.pool.root.1
[2025-11-23 16:18:09] -rw-r--r-- 2 boinc boinc    590101 Nov 23 16:13 input.tar.gz
[2025-11-23 16:18:09] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:13 start_atlas.sh
[2025-11-23 16:18:09] drwxrwx--x 2 boinc boinc      4096 Nov 23 16:13 shared
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc         0 Nov 23 16:13 boinc_setup_complete
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc      6194 Nov 23 16:13 init_data.xml
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc         0 Nov 23 16:13 boinc_lockfile
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc      2784 Nov 23 16:13 pandaJob.out
[2025-11-23 16:18:09] -rw------- 1 boinc boinc    989785 Nov 23 16:14 agis_schedconf.cvmfs.json
[2025-11-23 16:18:09] -rw------- 1 boinc boinc   1526164 Nov 23 16:14 agis_ddmendpoints.agis.ALL.json
[2025-11-23 16:18:09] drwx------ 5 boinc boinc      4096 Nov 23 16:14 pilot3
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc       523 Nov 23 16:14 boinc_task_state.xml
[2025-11-23 16:18:09] -rw------- 1 boinc boinc       982 Nov 23 16:15 memory_monitor_summary.json
[2025-11-23 16:18:09] -rw------- 1 boinc boinc     55579 Nov 23 16:15 log.47556137._003776.job.log.tgz.1
[2025-11-23 16:18:09] -rw------- 1 boinc boinc        95 Nov 23 16:17 pilot_heartbeat.json
[2025-11-23 16:18:09] -rw------- 1 boinc boinc      8386 Nov 23 16:17 heartbeat.json
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc      8192 Nov 23 16:18 boinc_mmap_file
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc        23 Nov 23 16:18 wrapper_checkpoint.txt
[2025-11-23 16:18:09] -rw------- 1 boinc boinc      4752 Nov 23 16:18 pilotlog.txt
[2025-11-23 16:18:09] -rw------- 1 boinc boinc     91597 Nov 23 16:18 log.47556137._003776.job.log.1
[2025-11-23 16:18:09] -rw------- 1 boinc boinc       186 Nov 23 16:18 output.list
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc       620 Nov 23 16:18 runtime_log
[2025-11-23 16:18:09] -rw------- 1 boinc boinc    163840 Nov 23 16:18 result.tar.gz
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc      8744 Nov 23 16:18 runtime_log.err
[2025-11-23 16:18:09] -rw------- 1 boinc boinc       649 Nov 23 16:18 0HZNDmda2g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmS7HKDmtP2Qfn.diag
[2025-11-23 16:18:09] -rw-r--r-- 1 boinc boinc      9405 Nov 23 16:18 stderr.txt
[2025-11-23 16:18:09] No HITS result produced
[2025-11-23 16:18:09]  *** Contents of shared directory: ***
[2025-11-23 16:18:09] total 402256
[2025-11-23 16:18:09] -rw-r--r-- 2 boinc boinc 411129489 Nov 23 16:13 ATLAS.root_0
[2025-11-23 16:18:09] -rw-r--r-- 2 boinc boinc    590101 Nov 23 16:13 input.tar.gz
[2025-11-23 16:18:09] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:13 start_atlas.sh
[2025-11-23 16:18:09] -rw------- 1 boinc boinc    163840 Nov 23 16:18 result.tar.gz
16:18:10 (3349269): run_atlas exited; CPU time 29.934837
16:18:10 (3349269): called boinc_finish(0)

</stderr_txt>
]]>

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