Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:40:42 (3655026): wrapper (7.7.26015): starting
07:40:42 (3655026): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 07:40:42] Arguments: --nthreads 8
[2025-11-23 07:40:42] Threads: 8
[2025-11-23 07:40:42] Checking for CVMFS
[2025-11-23 07:40:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 07:40:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 07:40:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 07:40:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 07:40:42] 2.13.2.0 6699 31530 266716 153209 3 381 36021078 40960000 24209 16776704 0 74669394 99.616 68513831 35856 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 07:40:42] CVMFS is ok
[2025-11-23 07:40:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 07:40:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 07:40:42] Further information can be found at the LHC@home message board.
[2025-11-23 07:40:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 07:40:42] Checking for apptainer binary...
[2025-11-23 07:40:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 07:40:42] Running /usr/bin/apptainer --version
[2025-11-23 07:40:42] apptainer version 1.4.4-1.el9
[2025-11-23 07:40:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 07:40:42] c-212-4.aglt2.org
[2025-11-23 07:40:42] apptainer works
[2025-11-23 07:40:42] Set ATHENA_PROC_NUMBER=8
[2025-11-23 07:40:42] Set ATHENA_CORE_NUMBER=8
[2025-11-23 07:40:42] Starting ATLAS job with PandaID=6895332500
[2025-11-23 07:40:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 18:39:41]  *** The last 200 lines of the pilot log: ***
[2025-11-24 18:39:41] 2025-11-24 23:38:47,407 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:39:41] 2025-11-24 23:38:47,450 | INFO     | time since job start (125871s) is within the limit (172800.0s)
[2025-11-24 18:39:41] 2025-11-24 23:38:47,532 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 18:39:41] 2025-11-24 23:38:47,538 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3124.246468749999
[2025-11-24 18:39:41] 2025-11-24 23:38:47,552 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895332500/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 18:39:41] 2025-11-24 23:38:47,553 | INFO     | extracted standard info from prmon json
[2025-11-24 18:39:41] 2025-11-24 23:38:47,553 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 18:39:41] 2025-11-24 23:38:47,553 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 18:39:41] 2025-11-24 23:38:47,608 | INFO     | fitting pss+swap vs Time
[2025-11-24 18:39:41] 2025-11-24 23:38:47,610 | INFO     | sum of square deviations: 2722570097687.3857
[2025-11-24 18:39:41] 2025-11-24 23:38:47,834 | INFO     | sum of deviations: 7808034269443.129
[2025-11-24 18:39:41] 2025-11-24 23:38:47,834 | INFO     | mean x: 1763964577.9282598
[2025-11-24 18:39:41] 2025-11-24 23:38:47,834 | INFO     | mean y: 2921305.8928744546
[2025-11-24 18:39:41] 2025-11-24 23:38:47,834 | INFO     | intersect: -5055936824.609192
[2025-11-24 18:39:41] 2025-11-24 23:38:47,836 | INFO     | chi2: 5.443580559229818
[2025-11-24 18:39:41] 2025-11-24 23:38:47,845 | INFO     | sum of square deviations: 2702823675581.2417
[2025-11-24 18:39:41] 2025-11-24 23:38:48,274 | INFO     | sum of deviations: 8470031489727.347
[2025-11-24 18:39:41] 2025-11-24 23:38:48,275 | INFO     | mean x: 1763964425.4329445
[2025-11-24 18:39:41] 2025-11-24 23:38:48,275 | INFO     | mean y: 2926417.1073858114
[2025-11-24 18:39:41] 2025-11-24 23:38:48,275 | INFO     | intersect: -5524934821.181798
[2025-11-24 18:39:41] 2025-11-24 23:38:48,297 | INFO     | chi2: 2.5566574094807875
[2025-11-24 18:39:41] 2025-11-24 23:38:48,298 | INFO     | current chi2=2.5566574094807875 (change=53.033534056075126 %)
[2025-11-24 18:39:41] 2025-11-24 23:38:48,300 | INFO     | sum of square deviations: 2683172349252.3833
[2025-11-24 18:39:41] 2025-11-24 23:38:48,585 | INFO     | sum of deviations: 8546303437462.443
[2025-11-24 18:39:41] 2025-11-24 23:38:48,585 | INFO     | mean x: 1763964272.9352167
[2025-11-24 18:39:41] 2025-11-24 23:38:48,585 | INFO     | mean y: 2927007.7476863125
[2025-11-24 18:39:41] 2025-11-24 23:38:48,586 | INFO     | intersect: -5615561843.16331
[2025-11-24 18:39:41] 2025-11-24 23:38:48,587 | INFO     | chi2: 2.3815763500993365
[2025-11-24 18:39:41] 2025-11-24 23:38:48,587 | INFO     | current chi2=2.3815763500993365 (change=6.848045370967666 %)
[2025-11-24 18:39:41] 2025-11-24 23:38:48,587 | INFO     | right removable region: 2052
[2025-11-24 18:39:41] 2025-11-24 23:38:48,593 | INFO     | sum of square deviations: 2702821249001.243
[2025-11-24 18:39:41] 2025-11-24 23:38:48,764 | INFO     | sum of deviations: 7242846097616.161
[2025-11-24 18:39:41] 2025-11-24 23:38:48,769 | INFO     | mean x: 1763964730.4329445
[2025-11-24 18:39:41] 2025-11-24 23:38:48,769 | INFO     | mean y: 2925667.7764820214
[2025-11-24 18:39:41] 2025-11-24 23:38:48,769 | INFO     | intersect: -4724033271.468901
[2025-11-24 18:39:41] 2025-11-24 23:38:48,771 | INFO     | chi2: 3.2762530590738246
[2025-11-24 18:39:41] 2025-11-24 23:38:48,771 | INFO     | current chi2=3.2762530590738246 (change=39.81437358323281 %)
[2025-11-24 18:39:41] 2025-11-24 23:38:48,777 | INFO     | sum of square deviations: 2683168373631.772
[2025-11-24 18:39:41] 2025-11-24 23:38:48,948 | INFO     | sum of deviations: 7147789323366.888
[2025-11-24 18:39:41] 2025-11-24 23:38:48,948 | INFO     | mean x: 1763964882.936678
[2025-11-24 18:39:41] 2025-11-24 23:38:48,948 | INFO     | mean y: 2926405.152946907
[2025-11-24 18:39:41] 2025-11-24 23:38:48,949 | INFO     | intersect: -4696163477.150223
[2025-11-24 18:39:41] 2025-11-24 23:38:48,954 | INFO     | chi2: 3.2620479236311204
[2025-11-24 18:39:41] 2025-11-24 23:38:48,954 | INFO     | current chi2=3.2620479236311204 (change=0.43357870062454473 %)
[2025-11-24 18:39:41] 2025-11-24 23:38:48,954 | INFO     | left removable region: 20
[2025-11-24 18:39:41] 2025-11-24 23:38:48,956 | INFO     | sum of square deviations: 2601670131459.274
[2025-11-24 18:39:41] 2025-11-24 23:38:49,119 | INFO     | sum of deviations: 7743657281490.868
[2025-11-24 18:39:41] 2025-11-24 23:38:49,119 | INFO     | mean x: 1763964852.4517717
[2025-11-24 18:39:41] 2025-11-24 23:38:49,120 | INFO     | mean y: 2933116.0752952755
[2025-11-24 18:39:41] 2025-11-24 23:38:49,123 | INFO     | intersect: -5247363264.2427225
[2025-11-24 18:39:41] 2025-11-24 23:38:49,125 | INFO     | chi2: 0.1893622449388437
[2025-11-24 18:39:41] 2025-11-24 23:38:49,125 | INFO     | current memory leak: 2.98 B/s (using 2032 data points, chi2=0.19)
[2025-11-24 18:39:41] 2025-11-24 23:38:49,126 | INFO     | could have reported an average CPU frequency of 3063 MHz (73 samples)
[2025-11-24 18:39:41] 2025-11-24 23:38:49,126 | INFO     | ..............................
[2025-11-24 18:39:41] 2025-11-24 23:38:49,126 | INFO     | . Timing measurements:
[2025-11-24 18:39:41] 2025-11-24 23:38:49,126 | INFO     | . get job = 0 s
[2025-11-24 18:39:41] 2025-11-24 23:38:49,127 | INFO     | . initial setup = 2 s
[2025-11-24 18:39:41] 2025-11-24 23:38:49,127 | INFO     | . payload setup = 7 s
[2025-11-24 18:39:41] 2025-11-24 23:38:49,178 | INFO     | . stage-in = 0 s
[2025-11-24 18:39:41] 2025-11-24 23:38:49,178 | INFO     | . payload execution = 125818 s
[2025-11-24 18:39:41] 2025-11-24 23:38:49,178 | INFO     | . stage-out = 14 s
[2025-11-24 18:39:41] 2025-11-24 23:38:49,178 | INFO     | . log creation = 9 s
[2025-11-24 18:39:41] 2025-11-24 23:38:49,178 | INFO     | ..............................
[2025-11-24 18:39:41] 2025-11-24 23:38:49,481 | INFO     | time since job start (125873s) is within the limit (172800.0s)
[2025-11-24 18:39:41] 2025-11-24 23:38:49,934 | INFO     | 
[2025-11-24 18:39:41] 2025-11-24 23:38:49,934 | INFO     | job summary report
[2025-11-24 18:39:41] 2025-11-24 23:38:49,934 | INFO     | --------------------------------------------------
[2025-11-24 18:39:41] 2025-11-24 23:38:49,934 | INFO     | PanDA job id: 6895332500
[2025-11-24 18:39:41] 2025-11-24 23:38:49,934 | INFO     | task id: 47556149
[2025-11-24 18:39:41] 2025-11-24 23:38:49,934 | INFO     | errors: (none)
[2025-11-24 18:39:41] 2025-11-24 23:38:49,934 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | pilot state: finished 
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | transexitcode: 0
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | exeerrorcode: 0
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | exeerrordiag: 
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | exitcode: 0
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | exitmsg: OK
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | cpuconsumptiontime: 208505 s
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | nevents: 1000
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | neventsw: 0
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | pid: 3666762
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | pgrp: 3666762
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | corecount: 8
[2025-11-24 18:39:41] 2025-11-24 23:38:49,935 | INFO     | event service: False
[2025-11-24 18:39:41] 2025-11-24 23:38:49,936 | INFO     | sizes: {0: 2298634, 1: 2298833, 6: 2299095, 11: 2299123, 125831: 2382205, 125847: 2392448, 125858: 2392416}
[2025-11-24 18:39:41] 2025-11-24 23:38:49,936 | INFO     | --------------------------------------------------
[2025-11-24 18:39:41] 2025-11-24 23:38:49,936 | INFO     | 
[2025-11-24 18:39:41] 2025-11-24 23:38:49,936 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-24 18:39:41] 2025-11-24 23:38:49,985 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,985 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,985 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,985 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,985 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,986 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,987 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 18:39:41] 2025-11-24 23:38:49,987 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,987 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 18:39:41] 2025-11-24 23:38:49,987 | INFO     | job 6895332500 has completed (purged errors)
[2025-11-24 18:39:41] 2025-11-24 23:38:49,987 | INFO     | overall cleanup function is called
[2025-11-24 18:39:41] 2025-11-24 23:38:51,005 | INFO     | --- collectZombieJob: --- 10, [3666762]
[2025-11-24 18:39:41] 2025-11-24 23:38:51,005 | INFO     | zombie collector waiting for pid 3666762
[2025-11-24 18:39:41] 2025-11-24 23:38:51,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 18:39:41] 2025-11-24 23:38:51,007 | INFO     | collected zombie processes
[2025-11-24 18:39:41] 2025-11-24 23:38:51,007 | INFO     | will attempt to kill all subprocesses of pid=3666762
[2025-11-24 18:39:41] 2025-11-24 23:38:51,762 | INFO     | process IDs to be killed: [3666762] (in reverse order)
[2025-11-24 18:39:41] 2025-11-24 23:38:51,917 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 18:39:41] 2025-11-24 23:38:51,918 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 18:39:41] 2025-11-24 23:38:52,002 | INFO     | did not find any defunct processes belonging to 3666762
[2025-11-24 18:39:41] 2025-11-24 23:38:52,108 | INFO     | did not find any defunct processes belonging to 3666762
[2025-11-24 18:39:41] 2025-11-24 23:38:52,161 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 18:39:41] 2025-11-24 23:38:52,161 | INFO     | ready for new job
[2025-11-24 18:39:41] 2025-11-24 23:38:52,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 18:39:41] 2025-11-24 23:38:52,194 | INFO     | ***************************************
[2025-11-24 18:39:41] 2025-11-24 23:38:52,194 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 18:39:41] 2025-11-24 23:38:52,194 | INFO     | ***************************************
[2025-11-24 18:39:41] 2025-11-24 23:38:52,194 | INFO     | 
[2025-11-24 18:39:41] 2025-11-24 23:38:52,211 | INFO     | architecture information:
[2025-11-24 18:39:41] 2025-11-24 23:38:52,215 | INFO     | executing command: cat /etc/os-release
[2025-11-24 18:39:41] 2025-11-24 23:38:52,262 | INFO     | cat /etc/os-release:
[2025-11-24 18:39:41] NAME="CentOS Linux"
[2025-11-24 18:39:41] VERSION="7 (Core)"
[2025-11-24 18:39:41] ID="centos"
[2025-11-24 18:39:41] ID_LIKE="rhel fedora"
[2025-11-24 18:39:41] VERSION_ID="7"
[2025-11-24 18:39:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 18:39:41] ANSI_COLOR="0;31"
[2025-11-24 18:39:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 18:39:41] HOME_URL="https://www.centos.org/"
[2025-11-24 18:39:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 18:39:41] 
[2025-11-24 18:39:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 18:39:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 18:39:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 18:39:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 18:39:41] 
[2025-11-24 18:39:41] 2025-11-24 23:38:52,263 | INFO     | ***************************************
[2025-11-24 18:39:41] 2025-11-24 23:38:52,769 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-24 18:39:41] 2025-11-24 23:38:52,945 | INFO     | sufficient remaining disk space (122424393728 B)
[2025-11-24 18:39:41] 2025-11-24 23:38:52,945 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 18:39:41] 2025-11-24 23:38:52,946 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 18:39:41] 2025-11-24 23:38:52,946 | INFO     | update_server=False
[2025-11-24 18:39:41] 2025-11-24 23:38:52,946 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 18:39:41] 2025-11-24 23:38:53,522 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:39:41] 2025-11-24 23:38:53,522 | INFO     | aborting loop
[2025-11-24 18:39:41] 2025-11-24 23:38:53,588 | INFO     | all payload control threads have been joined
[2025-11-24 18:39:41] 2025-11-24 23:38:53,791 | INFO     | all job control threads have been joined
[2025-11-24 18:39:41] 2025-11-24 23:38:53,952 | INFO     | [job] retrieve thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:53,974 | INFO     | all data control threads have been joined
[2025-11-24 18:39:41] 2025-11-24 23:38:54,048 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 18:39:41] 2025-11-24 23:38:54,351 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 18:39:41] 2025-11-24 23:38:54,431 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:54,528 | INFO     | [job] job monitor thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:54,575 | INFO     | [payload] failed_post thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:54,593 | INFO     | [payload] control thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:54,676 | INFO     | [payload] validate_post thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:54,712 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:39:41] 2025-11-24 23:38:54,789 | INFO     | [job] validate thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:54,797 | INFO     | [job] control thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:54,980 | INFO     | [data] control thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:54,992 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:55,143 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:55,381 | INFO     | [data] copytool_in thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:55,381 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:55,718 | INFO     | [job] queue monitor thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:56,358 | INFO     | [data] copytool_out thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:38:58,054 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 18:39:41] 2025-11-24 23:39:24,093 | INFO     | PID=3659571 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 18:39:41] 2025-11-24 23:39:24,093 | INFO     | .. there are 25 such processes running
[2025-11-24 18:39:41] 2025-11-24 23:39:24,093 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 18:39:41] 2025-11-24 23:39:24,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 18:39:41] 2025-11-24 23:39:24,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 18:39:41] 2025-11-24 23:39:34,969 | INFO     | [monitor] cgroup control has ended
[2025-11-24 18:39:41] 2025-11-24 23:39:35,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140434386970432)>', '<ExcThread(monitor, started 140433753634560)>']
[2025-11-24 18:39:41] 2025-11-24 23:39:36,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 18:39:41] 2025-11-24 23:39:36,163 | INFO     | [monitor] control thread has ended
[2025-11-24 18:39:41] 2025-11-24 23:39:41,000 | INFO     | all workflow threads have been joined
[2025-11-24 18:39:41] 2025-11-24 23:39:41,000 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 18:39:41] 2025-11-24 23:39:41,000 | INFO     | traces error code: 0
[2025-11-24 18:39:41] 2025-11-24 23:39:41,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 18:39:41] 2025-11-24 23:39:41,436 [wrapper] ==== pilot stdout END ====
[2025-11-24 18:39:41] 2025-11-24 23:39:41,439 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 18:39:41] 2025-11-24 23:39:41,442 [wrapper] pilotpid: 3659571
[2025-11-24 18:39:41] 2025-11-24 23:39:41,445 [wrapper] Pilot exit status: 0
[2025-11-24 18:39:41] 2025-11-24 23:39:41,468 [wrapper] pandaids: 6895332500
[2025-11-24 18:39:41] 2025-11-24 23:39:41,583 [wrapper] cleanup supervisor_pilot  660853 3659572
[2025-11-24 18:39:41] 2025-11-24 23:39:41,607 [wrapper] Test setup, not cleaning
[2025-11-24 18:39:41] 2025-11-24 23:39:41,623 [wrapper] apfmon messages muted
[2025-11-24 18:39:41] 2025-11-24 23:39:41,650 [wrapper] ==== wrapper stdout END ====
[2025-11-24 18:39:41] 2025-11-24 23:39:41,654 [wrapper] ==== wrapper stderr END ====
[2025-11-24 18:39:41]  *** Error codes and diagnostics ***
[2025-11-24 18:39:41]     "exeErrorCode": 0,
[2025-11-24 18:39:41]     "exeErrorDiag": "",
[2025-11-24 18:39:41]     "pilotErrorCode": 0,
[2025-11-24 18:39:41]     "pilotErrorDiag": "",
[2025-11-24 18:39:41]  *** Listing of results directory ***
[2025-11-24 18:39:41] total 1326520
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 19:25 pilot3.tar.gz
[2025-11-24 18:39:41] -rwx------. 1 boincer umatlas     36292 Nov 21 19:28 runpilot2-wrapper.sh
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 19:28 queuedata.json
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas       100 Nov 23 07:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 18:39:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 07:40 run_atlas
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas       105 Nov 23 07:40 job.xml
[2025-11-24 18:39:41] -rw-r--r--. 2 boincer umatlas 408823272 Nov 23 07:40 EVNT.47483658._001052.pool.root.1
[2025-11-24 18:39:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 07:40 start_atlas.sh
[2025-11-24 18:39:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 07:40 shared
[2025-11-24 18:39:41] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 07:40 input.tar.gz
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas         0 Nov 23 07:40 boinc_lockfile
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 07:40 pandaJob.out
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas        57 Nov 23 07:40 setup.sh.local
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas    989784 Nov 23 07:40 agis_schedconf.cvmfs.json
[2025-11-24 18:39:41] drwx------. 5 boincer umatlas      4096 Nov 23 07:40 pilot3
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas       534 Nov 24 18:30 boinc_task_state.xml
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas 907866767 Nov 24 18:37 HITS.47556149._000388.pool.root.1
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas      1070 Nov 24 18:38 memory_monitor_summary.json
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas   1516227 Nov 24 18:38 agis_ddmendpoints.agis.ALL.json
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas        95 Nov 24 18:38 pilot_heartbeat.json
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas      6949 Nov 24 18:38 init_data.xml
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas   2896832 Nov 24 18:38 log.47556149._000388.job.log.tgz.1
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas      8621 Nov 24 18:38 heartbeat.json
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 18:39 boinc_mmap_file
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas        30 Nov 24 18:39 wrapper_checkpoint.txt
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas      4825 Nov 24 18:39 pilotlog.txt
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas  15972800 Nov 24 18:39 log.47556149._000388.job.log.1
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas       353 Nov 24 18:39 output.list
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas       620 Nov 24 18:39 runtime_log
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas  18892800 Nov 24 18:39 result.tar.gz
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas      9339 Nov 24 18:39 runtime_log.err
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas       667 Nov 24 18:39 GLMODm4eqg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0sHKDmPn8ePn.diag
[2025-11-24 18:39:41] -rw-r--r--. 1 boincer umatlas     21337 Nov 24 18:39 stderr.txt
[2025-11-24 18:39:41] HITS file was successfully produced:
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas 907866767 Nov 24 18:37 shared/HITS.pool.root.1
[2025-11-24 18:39:41]  *** Contents of shared directory: ***
[2025-11-24 18:39:41] total 1304892
[2025-11-24 18:39:41] -rw-r--r--. 2 boincer umatlas 408823272 Nov 23 07:40 ATLAS.root_0
[2025-11-24 18:39:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 07:40 start_atlas.sh
[2025-11-24 18:39:41] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 07:40 input.tar.gz
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas 907866767 Nov 24 18:37 HITS.pool.root.1
[2025-11-24 18:39:41] -rw-------. 1 boincer umatlas  18892800 Nov 24 18:39 result.tar.gz
18:39:42 (3655026): run_atlas exited; CPU time 210833.414406
18:39:42 (3655026): called boinc_finish(0)

</stderr_txt>
]]>

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