Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:47:41 (25226): wrapper (7.7.26015): starting
01:47:41 (25226): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 01:47:41] Arguments: --nthreads 8
[2025-11-26 01:47:41] Threads: 8
[2025-11-26 01:47:41] Checking for CVMFS
[2025-11-26 01:47:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:47:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:47:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:47:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:47:44] 2.11.2.0 30898 284496 139432 153303 2 278 14969544 25165824 4214 130560 12 128368731 99.874 79289060 3033 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 01:47:44] CVMFS is ok
[2025-11-26 01:47:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:47:44] Checking for apptainer binary...
[2025-11-26 01:47:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:47:44] Running /usr/bin/apptainer --version
[2025-11-26 01:47:44] apptainer version 1.3.2-1.el7
[2025-11-26 01:47:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:47:55] cg-vwn285.simple-grid.lan
[2025-11-26 01:47:55] apptainer works
[2025-11-26 01:47:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 01:47:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 01:47:55] Starting ATLAS job with PandaID=6895340090
[2025-11-26 01:47:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:08:13]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:08:13] 2025-11-27 01:07:25,586 | INFO     | monitor loop #5818: job 0:6895340090 is in state 'finished'
[2025-11-27 02:08:13] 2025-11-27 01:07:25,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:08:13] 2025-11-27 01:07:26,050 | INFO     | PID=29037 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:08:13] 2025-11-27 01:07:26,050 | INFO     | .. there are 9 such processes running
[2025-11-27 02:08:13] 2025-11-27 01:07:27,055 | INFO     | time since job start (87478s) is within the limit (172800.0s)
[2025-11-27 02:08:13] 2025-11-27 01:07:28,094 | INFO     | monitor loop #5819: job 0:6895340090 is in state 'finished'
[2025-11-27 02:08:13] 2025-11-27 01:07:28,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:08:13] 2025-11-27 01:07:29,064 | INFO     | time since job start (87480s) is within the limit (172800.0s)
[2025-11-27 02:08:13] 2025-11-27 01:07:30,604 | INFO     | monitor loop #5820: job 0:6895340090 is in state 'finished'
[2025-11-27 02:08:13] 2025-11-27 01:07:30,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:08:13] 2025-11-27 01:07:31,072 | INFO     | time since job start (87482s) is within the limit (172800.0s)
[2025-11-27 02:08:13] 2025-11-27 01:07:33,080 | INFO     | time since job start (87484s) is within the limit (172800.0s)
[2025-11-27 02:08:13] 2025-11-27 01:07:33,109 | INFO     | monitor loop #5821: job 0:6895340090 is in state 'finished'
[2025-11-27 02:08:13] 2025-11-27 01:07:33,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:08:13] 2025-11-27 01:07:33,627 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:08:13] 2025-11-27 01:07:33,628 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 02:08:13] 2025-11-27 01:07:33,630 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6895340090/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:08:13] 2025-11-27 01:07:33,631 | INFO     | extracted standard info from prmon json
[2025-11-27 02:08:13] 2025-11-27 01:07:33,631 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:08:13] 2025-11-27 01:07:33,631 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:08:13] 2025-11-27 01:07:33,659 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:08:13] 2025-11-27 01:07:33,662 | INFO     | sum of square deviations: 910553370556.3794
[2025-11-27 02:08:13] 2025-11-27 01:07:33,738 | INFO     | sum of deviations: 2302807697761.49
[2025-11-27 02:08:13] 2025-11-27 01:07:33,738 | INFO     | mean x: 1764161870.5900838
[2025-11-27 02:08:13] 2025-11-27 01:07:33,738 | INFO     | mean y: 2855730.7248603352
[2025-11-27 02:08:13] 2025-11-27 01:07:33,738 | INFO     | intersect: -4458744947.563566
[2025-11-27 02:08:13] 2025-11-27 01:07:33,740 | INFO     | chi2: 16.152903231904304
[2025-11-27 02:08:13] 2025-11-27 01:07:33,743 | INFO     | sum of square deviations: 901049147515.4171
[2025-11-27 02:08:13] 2025-11-27 01:07:33,828 | INFO     | sum of deviations: 2780970429488.905
[2025-11-27 02:08:13] 2025-11-27 01:07:33,829 | INFO     | mean x: 1764161718.0939033
[2025-11-27 02:08:13] 2025-11-27 01:07:33,829 | INFO     | mean y: 2863402.3440784863
[2025-11-27 02:08:13] 2025-11-27 01:07:33,829 | INFO     | intersect: -5441991170.110353
[2025-11-27 02:08:13] 2025-11-27 01:07:33,831 | INFO     | chi2: 12.87334235200452
[2025-11-27 02:08:13] 2025-11-27 01:07:33,831 | INFO     | current chi2=12.87334235200452 (change=20.303228669272155 %)
[2025-11-27 02:08:13] 2025-11-27 01:07:33,831 | INFO     | right removable region: 1426
[2025-11-27 02:08:13] 2025-11-27 01:07:33,833 | INFO     | sum of square deviations: 901048195305.4171
[2025-11-27 02:08:13] 2025-11-27 01:07:33,921 | INFO     | sum of deviations: 1846598519196.6235
[2025-11-27 02:08:13] 2025-11-27 01:07:33,921 | INFO     | mean x: 1764162023.0939033
[2025-11-27 02:08:13] 2025-11-27 01:07:33,921 | INFO     | mean y: 2863046.5774351787
[2025-11-27 02:08:13] 2025-11-27 01:07:33,921 | INFO     | intersect: -3612591705.3894114
[2025-11-27 02:08:13] 2025-11-27 01:07:33,929 | INFO     | chi2: 13.447010850260916
[2025-11-27 02:08:13] 2025-11-27 01:07:33,930 | INFO     | current chi2=13.447010850260916 (change=16.75174018438284 %)
[2025-11-27 02:08:13] 2025-11-27 01:07:33,930 | INFO     | left removable region: 10
[2025-11-27 02:08:13] 2025-11-27 01:07:33,932 | INFO     | sum of square deviations: 880371866120.5511
[2025-11-27 02:08:13] 2025-11-27 01:07:33,996 | INFO     | sum of deviations: 2332745749191.8203
[2025-11-27 02:08:13] 2025-11-27 01:07:33,996 | INFO     | mean x: 1764161992.5974576
[2025-11-27 02:08:13] 2025-11-27 01:07:33,996 | INFO     | mean y: 2874188.1716101696
[2025-11-27 02:08:13] 2025-11-27 01:07:33,996 | INFO     | intersect: -4671674769.477576
[2025-11-27 02:08:13] 2025-11-27 01:07:33,998 | INFO     | chi2: 9.259103029491527
[2025-11-27 02:08:13] 2025-11-27 01:07:33,998 | INFO     | current memory leak: 2.65 B/s (using 1416 data points, chi2=9.26)
[2025-11-27 02:08:13] 2025-11-27 01:07:34,000 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 02:08:13] 2025-11-27 01:07:34,000 | INFO     | ..............................
[2025-11-27 02:08:13] 2025-11-27 01:07:34,000 | INFO     | . Timing measurements:
[2025-11-27 02:08:13] 2025-11-27 01:07:34,000 | INFO     | . get job = 0 s
[2025-11-27 02:08:13] 2025-11-27 01:07:34,000 | INFO     | . initial setup = 2 s
[2025-11-27 02:08:13] 2025-11-27 01:07:34,000 | INFO     | . payload setup = 12 s
[2025-11-27 02:08:13] 2025-11-27 01:07:34,000 | INFO     | . stage-in = 0 s
[2025-11-27 02:08:13] 2025-11-27 01:07:34,000 | INFO     | . payload execution = 87341 s
[2025-11-27 02:08:13] 2025-11-27 01:07:34,000 | INFO     | . stage-out = 5 s
[2025-11-27 02:08:13] 2025-11-27 01:07:34,001 | INFO     | . log creation = 2 s
[2025-11-27 02:08:13] 2025-11-27 01:07:34,001 | INFO     | ..............................
[2025-11-27 02:08:13] 2025-11-27 01:07:34,116 | INFO     | 
[2025-11-27 02:08:13] 2025-11-27 01:07:34,116 | INFO     | job summary report
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | --------------------------------------------------
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | PanDA job id: 6895340090
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | task id: 47556149
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | errors: (none)
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | pilot state: finished 
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | transexitcode: 0
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | exeerrorcode: 0
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | exeerrordiag: 
[2025-11-27 02:08:13] 2025-11-27 01:07:34,117 | INFO     | exitcode: 0
[2025-11-27 02:08:13] 2025-11-27 01:07:34,118 | INFO     | exitmsg: OK
[2025-11-27 02:08:13] 2025-11-27 01:07:34,118 | INFO     | cpuconsumptiontime: 331214 s
[2025-11-27 02:08:13] 2025-11-27 01:07:34,118 | INFO     | nevents: 1000
[2025-11-27 02:08:13] 2025-11-27 01:07:34,118 | INFO     | neventsw: 0
[2025-11-27 02:08:13] 2025-11-27 01:07:34,118 | INFO     | pid: 3760
[2025-11-27 02:08:13] 2025-11-27 01:07:34,118 | INFO     | pgrp: 3760
[2025-11-27 02:08:13] 2025-11-27 01:07:34,118 | INFO     | corecount: 8
[2025-11-27 02:08:13] 2025-11-27 01:07:34,118 | INFO     | event service: False
[2025-11-27 02:08:13] 2025-11-27 01:07:34,118 | INFO     | sizes: {0: 2284312, 1: 2284312, 10: 2284602, 12: 2284630, 87357: 2345877, 87363: 2354901, 87365: 2355085, 87464: 2355331}
[2025-11-27 02:08:13] 2025-11-27 01:07:34,119 | INFO     | --------------------------------------------------
[2025-11-27 02:08:13] 2025-11-27 01:07:34,119 | INFO     | 
[2025-11-27 02:08:13] 2025-11-27 01:07:34,119 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-27 02:08:13] 2025-11-27 01:07:34,749 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,749 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,749 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,749 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,750 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,750 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,750 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,750 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,750 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,750 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,750 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,750 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,751 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,751 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,751 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,751 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:08:13] 2025-11-27 01:07:34,751 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,751 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:08:13] 2025-11-27 01:07:34,751 | INFO     | job 6895340090 has completed (purged errors)
[2025-11-27 02:08:13] 2025-11-27 01:07:34,752 | INFO     | overall cleanup function is called
[2025-11-27 02:08:13] 2025-11-27 01:07:35,768 | INFO     | --- collectZombieJob: --- 10, [3760]
[2025-11-27 02:08:13] 2025-11-27 01:07:35,768 | INFO     | zombie collector waiting for pid 3760
[2025-11-27 02:08:13] 2025-11-27 01:07:35,769 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:08:13] 2025-11-27 01:07:35,769 | INFO     | collected zombie processes
[2025-11-27 02:08:13] 2025-11-27 01:07:35,769 | INFO     | will attempt to kill all subprocesses of pid=3760
[2025-11-27 02:08:13] 2025-11-27 01:07:35,894 | INFO     | process IDs to be killed: [3760] (in reverse order)
[2025-11-27 02:08:13] 2025-11-27 01:07:36,905 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:08:13] 2025-11-27 01:07:36,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:08:13] 2025-11-27 01:07:36,908 | INFO     | did not find any defunct processes belonging to 3760
[2025-11-27 02:08:13] 2025-11-27 01:07:36,911 | INFO     | did not find any defunct processes belonging to 3760
[2025-11-27 02:08:13] 2025-11-27 01:07:36,993 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:08:13] 2025-11-27 01:07:36,994 | INFO     | ready for new job
[2025-11-27 02:08:13] 2025-11-27 01:07:36,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:08:13] 2025-11-27 01:07:36,999 | INFO     | ***************************************
[2025-11-27 02:08:13] 2025-11-27 01:07:36,999 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:08:13] 2025-11-27 01:07:36,999 | INFO     | ***************************************
[2025-11-27 02:08:13] 2025-11-27 01:07:36,999 | INFO     | 
[2025-11-27 02:08:13] 2025-11-27 01:07:37,000 | INFO     | pilot is running in a VM
[2025-11-27 02:08:13] 2025-11-27 01:07:37,000 | INFO     | architecture information:
[2025-11-27 02:08:13] 2025-11-27 01:07:37,017 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:08:13] 2025-11-27 01:07:37,288 | INFO     | cat /etc/os-release:
[2025-11-27 02:08:13] NAME="CentOS Linux"
[2025-11-27 02:08:13] VERSION="7 (Core)"
[2025-11-27 02:08:13] ID="centos"
[2025-11-27 02:08:13] ID_LIKE="rhel fedora"
[2025-11-27 02:08:13] VERSION_ID="7"
[2025-11-27 02:08:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:08:13] ANSI_COLOR="0;31"
[2025-11-27 02:08:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:08:13] HOME_URL="https://www.centos.org/"
[2025-11-27 02:08:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:08:13] 
[2025-11-27 02:08:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:08:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:08:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:08:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:08:13] 
[2025-11-27 02:08:13] 2025-11-27 01:07:37,289 | INFO     | ***************************************
[2025-11-27 02:08:13] 2025-11-27 01:07:37,792 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-27 02:08:13] 2025-11-27 01:07:38,041 | INFO     | sufficient remaining disk space (495353593856 B)
[2025-11-27 02:08:13] 2025-11-27 01:07:38,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:08:13] 2025-11-27 01:07:38,041 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:08:13] 2025-11-27 01:07:38,042 | INFO     | update_server=False
[2025-11-27 02:08:13] 2025-11-27 01:07:38,042 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:08:13] 2025-11-27 01:07:38,136 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 02:08:13] 2025-11-27 01:07:38,136 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 02:08:13] 2025-11-27 01:07:38,137 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:08:13] 2025-11-27 01:07:38,137 | INFO     | will abort loop
[2025-11-27 02:08:13] 2025-11-27 01:07:38,302 | INFO     | all data control threads have been joined
[2025-11-27 02:08:13] 2025-11-27 01:07:38,538 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:08:13] 2025-11-27 01:07:38,872 | INFO     | all payload control threads have been joined
[2025-11-27 02:08:13] 2025-11-27 01:07:39,047 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:39,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:08:13] 2025-11-27 01:07:39,143 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:39,294 | INFO     | [job] validate thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:39,308 | INFO     | [data] control thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:39,373 | INFO     | all job control threads have been joined
[2025-11-27 02:08:13] 2025-11-27 01:07:39,384 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:39,520 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:39,679 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:39,768 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:39,794 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:39,878 | INFO     | [payload] control thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:40,136 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:40,178 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:40,206 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:40,380 | INFO     | [job] control thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:40,547 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:07:40,747 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:08:13] 2025-11-27 01:07:44,757 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:08:13] 2025-11-27 01:08:01,917 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:08:13] 2025-11-27 01:08:03,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269313734464)>', '<ExcThread(monitor, started 140269018126080)>']
[2025-11-27 02:08:13] 2025-11-27 01:08:06,267 | INFO     | PID=29037 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:08:13] 2025-11-27 01:08:06,267 | INFO     | .. there are 9 such processes running
[2025-11-27 02:08:13] 2025-11-27 01:08:06,267 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:08:13] 2025-11-27 01:08:06,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:08:13] 2025-11-27 01:08:06,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:08:13] 2025-11-27 01:08:06,268 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:08:13] 2025-11-27 01:08:06,268 | INFO     | [monitor] control thread has ended
[2025-11-27 02:08:13] 2025-11-27 01:08:08,602 | INFO     | all workflow threads have been joined
[2025-11-27 02:08:13] 2025-11-27 01:08:08,602 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:08:13] 2025-11-27 01:08:08,603 | INFO     | traces error code: 0
[2025-11-27 02:08:13] 2025-11-27 01:08:08,603 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:08:13] 2025-11-27 01:08:08,876 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:08:13] 2025-11-27 01:08:09,003 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:08:13] 2025-11-27 01:08:09,100 [wrapper] pilotpid: 29037
[2025-11-27 02:08:13] 2025-11-27 01:08:09,165 [wrapper] Pilot exit status: 0
[2025-11-27 02:08:13] 2025-11-27 01:08:09,550 [wrapper] pandaids: 6895340090
[2025-11-27 02:08:13] 2025-11-27 01:08:10,397 [wrapper] cleanup supervisor_pilot  5595 29038
[2025-11-27 02:08:13] 2025-11-27 01:08:10,497 [wrapper] Test setup, not cleaning
[2025-11-27 02:08:13] 2025-11-27 01:08:10,566 [wrapper] apfmon messages muted
[2025-11-27 02:08:13] 2025-11-27 01:08:10,614 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:08:13] 2025-11-27 01:08:10,713 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:08:13]  *** Error codes and diagnostics ***
[2025-11-27 02:08:13]     "exeErrorCode": 0,
[2025-11-27 02:08:13]     "exeErrorDiag": "",
[2025-11-27 02:08:13]     "pilotErrorCode": 0,
[2025-11-27 02:08:13]     "pilotErrorDiag": "",
[2025-11-27 02:08:13]  *** Listing of results directory ***
[2025-11-27 02:08:13] total 1328900
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc    576529 Nov 22 13:20 pilot3.tar.gz
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc      5112 Nov 22 13:41 queuedata.json
[2025-11-27 02:08:13] -rwx------. 1 boinc boinc     36292 Nov 22 13:41 runpilot2-wrapper.sh
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc       100 Nov 26 01:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:08:13] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 01:47 run_atlas
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc       105 Nov 26 01:47 job.xml
[2025-11-27 02:08:13] -rw-r--r--. 2 boinc boinc 411006175 Nov 26 01:47 EVNT.47483658._001088.pool.root.1
[2025-11-27 02:08:13] drwxrwx--x. 2 boinc boinc        68 Nov 26 01:47 shared
[2025-11-27 02:08:13] -rw-r--r--. 2 boinc boinc    590108 Nov 26 01:47 input.tar.gz
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc      6392 Nov 26 01:47 init_data.xml
[2025-11-27 02:08:13] -rw-r--r--. 2 boinc boinc     15847 Nov 26 01:47 start_atlas.sh
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc         0 Nov 26 01:47 boinc_lockfile
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc      2783 Nov 26 01:47 pandaJob.out
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc    991877 Nov 26 01:49 agis_schedconf.cvmfs.json
[2025-11-27 02:08:13] drwx------. 5 boinc boinc      4096 Nov 26 01:49 pilot3
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc       533 Nov 27 01:44 boinc_task_state.xml
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc 917656046 Nov 27 02:04 HITS.47556149._000747.pool.root.1
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc      1031 Nov 27 02:05 memory_monitor_summary.json
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc   1516240 Nov 27 02:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc   2496022 Nov 27 02:05 log.47556149._000747.job.log.tgz.1
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc        95 Nov 27 02:07 pilot_heartbeat.json
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc      7950 Nov 27 02:07 heartbeat.json
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc        29 Nov 27 02:07 wrapper_checkpoint.txt
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc      8192 Nov 27 02:07 boinc_mmap_file
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc      5071 Nov 27 02:08 pilotlog.txt
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc  11618023 Nov 27 02:08 log.47556149._000747.job.log.1
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc       353 Nov 27 02:08 output.list
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc       620 Nov 27 02:08 runtime_log
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc  14131200 Nov 27 02:08 result.tar.gz
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc       662 Nov 27 02:08 S11MDmQ61g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmu9JKDmFPEEfm.diag
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc      8833 Nov 27 02:08 runtime_log.err
[2025-11-27 02:08:13] -rw-r--r--. 1 boinc boinc     21447 Nov 27 02:08 stderr.txt
[2025-11-27 02:08:13] HITS file was successfully produced:
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc 917656046 Nov 27 02:04 shared/HITS.pool.root.1
[2025-11-27 02:08:13]  *** Contents of shared directory: ***
[2025-11-27 02:08:13] total 1311924
[2025-11-27 02:08:13] -rw-r--r--. 2 boinc boinc 411006175 Nov 26 01:47 ATLAS.root_0
[2025-11-27 02:08:13] -rw-r--r--. 2 boinc boinc    590108 Nov 26 01:47 input.tar.gz
[2025-11-27 02:08:13] -rw-r--r--. 2 boinc boinc     15847 Nov 26 01:47 start_atlas.sh
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc 917656046 Nov 27 02:04 HITS.pool.root.1
[2025-11-27 02:08:13] -rw-------. 1 boinc boinc  14131200 Nov 27 02:08 result.tar.gz
02:08:14 (25226): run_atlas exited; CPU time 331823.757222
02:08:14 (25226): called boinc_finish(0)

</stderr_txt>
]]>

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