Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:04:42 (3286443): wrapper (7.7.26015): starting
12:04:42 (3286443): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 12:04:42] Arguments: --nthreads 3
[2025-11-23 12:04:42] Threads: 3
[2025-11-23 12:04:42] Checking for CVMFS
[2025-11-23 12:04:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 12:04:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 12:04:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 12:04:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 12:04:43] 2.9.2.0 2932062 76 63436 153205 3 88 34827270 36864000 0 130560 0 1064387 99.998 4055 13122 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 12:04:43] CVMFS is ok
[2025-11-23 12:04:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 12:04:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 12:04:43] Further information can be found at the LHC@home message board.
[2025-11-23 12:04:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 12:04:43] Checking for apptainer binary...
[2025-11-23 12:04:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 12:04:43] Running /usr/bin/apptainer --version
[2025-11-23 12:04:43] apptainer version 1.4.1-1.1
[2025-11-23 12:04:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 12:04:43] thA335
[2025-11-23 12:04:43] apptainer works
[2025-11-23 12:04:43] Set ATHENA_PROC_NUMBER=3
[2025-11-23 12:04:43] Set ATHENA_CORE_NUMBER=3
[2025-11-23 12:04:43] Starting ATLAS job with PandaID=6895324632
[2025-11-23 12:04:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 12:09:00]  *** The last 200 lines of the pilot log: ***
[2025-11-23 12:09:00] 2025-11-23 11:08:04,388 | INFO     | 
[2025-11-23 12:09:00] 2025-11-23 11:08:04,388 | INFO     | architecture information:
[2025-11-23 12:09:00] 2025-11-23 11:08:04,389 | INFO     | executing command: cat /etc/os-release
[2025-11-23 12:09:00] 2025-11-23 11:08:04,399 | INFO     | cat /etc/os-release:
[2025-11-23 12:09:00] NAME="CentOS Linux"
[2025-11-23 12:09:00] VERSION="7 (Core)"
[2025-11-23 12:09:00] ID="centos"
[2025-11-23 12:09:00] ID_LIKE="rhel fedora"
[2025-11-23 12:09:00] VERSION_ID="7"
[2025-11-23 12:09:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 12:09:00] ANSI_COLOR="0;31"
[2025-11-23 12:09:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 12:09:00] HOME_URL="https://www.centos.org/"
[2025-11-23 12:09:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 12:09:00] 
[2025-11-23 12:09:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 12:09:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 12:09:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 12:09:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 12:09:00] 
[2025-11-23 12:09:00] 2025-11-23 11:08:04,400 | INFO     | ***************************************
[2025-11-23 12:09:00] 2025-11-23 11:08:04,903 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 12:09:00] 2025-11-23 11:08:04,917 | INFO     | sufficient remaining disk space (827333804032 B)
[2025-11-23 12:09:00] 2025-11-23 11:08:04,917 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 12:09:00] 2025-11-23 11:08:04,917 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 12:09:00] 2025-11-23 11:08:04,917 | INFO     | update_server=False
[2025-11-23 12:09:00] 2025-11-23 11:08:04,917 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 12:09:00] 2025-11-23 11:08:04,917 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:09:00] 2025-11-23 11:08:04,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 12:09:00] 2025-11-23 11:08:05,317 | INFO     | all data control threads have been joined
[2025-11-23 12:09:00] 2025-11-23 11:08:05,519 | INFO     | all payload control threads have been joined
[2025-11-23 12:09:00] 2025-11-23 11:08:05,521 | INFO     | all job control threads have been joined
[2025-11-23 12:09:00] 2025-11-23 11:08:05,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:09:00] 2025-11-23 11:08:05,586 | INFO     | aborting loop
[2025-11-23 12:09:00] 2025-11-23 11:08:05,923 | INFO     | [job] queue monitor thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:05,923 | INFO     | [job] retrieve thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,158 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,323 | INFO     | [data] control thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,416 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,522 | INFO     | [job] control thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,524 | INFO     | [payload] control thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,556 | INFO     | [job] validate thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,592 | INFO     | [job] job monitor thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,627 | INFO     | [payload] failed_post thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,633 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,687 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:06,923 | INFO     | [data] copytool_out thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:07,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 12:09:00] 2025-11-23 11:08:07,372 | INFO     | [data] copytool_in thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:07,486 | INFO     | [payload] validate_post thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:11,236 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 12:09:00] 2025-11-23 11:08:35,168 | INFO     | PID=3290174 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 12:09:00] 2025-11-23 11:08:35,169 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 12:09:00] 2025-11-23 11:08:35,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 12:09:00] 2025-11-23 11:08:35,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 12:09:00] 2025-11-23 11:08:54,347 | INFO     | [monitor] cgroup control has ended
[2025-11-23 12:09:00] 2025-11-23 11:08:55,114 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337990973248)>', '<ExcThread(monitor, started 140337494345472)>']
[2025-11-23 12:09:00] 2025-11-23 11:08:55,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 12:09:00] 2025-11-23 11:08:55,275 | INFO     | [monitor] control thread has ended
[2025-11-23 12:09:00] 2025-11-23 11:09:00,140 | INFO     | all workflow threads have been joined
[2025-11-23 12:09:00] 2025-11-23 11:09:00,141 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 12:09:00] 2025-11-23 11:09:00,141 | INFO     | traces error code: 0
[2025-11-23 12:09:00] 2025-11-23 11:09:00,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 12:09:00] 2025-11-23 11:09:00,204 [wrapper] ==== pilot stdout END ====
[2025-11-23 12:09:00] 2025-11-23 11:09:00,207 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 12:09:00] 2025-11-23 11:09:00,210 [wrapper] pilotpid: 3290174
[2025-11-23 12:09:00] 2025-11-23 11:09:00,213 [wrapper] Pilot exit status: 0
[2025-11-23 12:09:00] 2025-11-23 11:09:00,220 [wrapper] pandaids: 6895324632
[2025-11-23 12:09:00] 2025-11-23 11:09:00,238 [wrapper] cleanup supervisor_pilot 3290180 3290175
[2025-11-23 12:09:00] 2025-11-23 11:09:00,240 [wrapper] Test setup, not cleaning
[2025-11-23 12:09:00] 2025-11-23 11:09:00,243 [wrapper] apfmon messages muted
[2025-11-23 12:09:00] 2025-11-23 11:09:00,245 [wrapper] ==== wrapper stdout END ====
[2025-11-23 12:09:00] 2025-11-23 11:09:00,248 [wrapper] ==== wrapper stderr END ====
[2025-11-23 12:09:00]  *** Error codes and diagnostics ***
[2025-11-23 12:09:00]     "exeErrorCode": 65,
[2025-11-23 12:09:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 12:09:00]     "pilotErrorCode": 1305,
[2025-11-23 12:09:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 12:09:00]  *** Listing of results directory ***
[2025-11-23 12:09:00] total 401664
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc      5112 Nov 21 15:24 queuedata.json
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc    576529 Nov 21 15:24 pilot3.tar.gz
[2025-11-23 12:09:00] -rwx------ 1 boinc boinc     36292 Nov 21 15:25 runpilot2-wrapper.sh
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc       100 Nov 23 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 12:09:00] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 12:04 run_atlas
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc       105 Nov 23 12:04 job.xml
[2025-11-23 12:09:00] -rw-r--r-- 2 boinc boinc 407106286 Nov 23 12:04 EVNT.47483658._001019.pool.root.1
[2025-11-23 12:09:00] -rw-r--r-- 2 boinc boinc    590100 Nov 23 12:04 input.tar.gz
[2025-11-23 12:09:00] -rw-r--r-- 2 boinc boinc     15847 Nov 23 12:04 start_atlas.sh
[2025-11-23 12:09:00] drwxrwx--x 2 boinc boinc      4096 Nov 23 12:04 shared
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc         0 Nov 23 12:04 boinc_setup_complete
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc      6194 Nov 23 12:04 init_data.xml
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc         0 Nov 23 12:04 boinc_lockfile
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc      2784 Nov 23 12:04 pandaJob.out
[2025-11-23 12:09:00] -rw------- 1 boinc boinc    989784 Nov 23 12:04 agis_schedconf.cvmfs.json
[2025-11-23 12:09:00] -rw------- 1 boinc boinc   1526164 Nov 23 12:04 agis_ddmendpoints.agis.ALL.json
[2025-11-23 12:09:00] drwx------ 5 boinc boinc      4096 Nov 23 12:04 pilot3
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc       523 Nov 23 12:05 boinc_task_state.xml
[2025-11-23 12:09:00] -rw------- 1 boinc boinc       958 Nov 23 12:05 memory_monitor_summary.json
[2025-11-23 12:09:00] -rw------- 1 boinc boinc     55692 Nov 23 12:05 log.47556149._000054.job.log.tgz.1
[2025-11-23 12:09:00] -rw------- 1 boinc boinc        95 Nov 23 12:07 pilot_heartbeat.json
[2025-11-23 12:09:00] -rw------- 1 boinc boinc      8394 Nov 23 12:08 heartbeat.json
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc      8192 Nov 23 12:08 boinc_mmap_file
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc        23 Nov 23 12:08 wrapper_checkpoint.txt
[2025-11-23 12:09:00] -rw------- 1 boinc boinc      4752 Nov 23 12:09 pilotlog.txt
[2025-11-23 12:09:00] -rw------- 1 boinc boinc     91572 Nov 23 12:09 log.47556149._000054.job.log.1
[2025-11-23 12:09:00] -rw------- 1 boinc boinc       186 Nov 23 12:09 output.list
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc       620 Nov 23 12:09 runtime_log
[2025-11-23 12:09:00] -rw------- 1 boinc boinc    163840 Nov 23 12:09 result.tar.gz
[2025-11-23 12:09:00] -rw------- 1 boinc boinc       649 Nov 23 12:09 wtqKDm2Fhg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6TJKDmHGaamm.diag
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc      8744 Nov 23 12:09 runtime_log.err
[2025-11-23 12:09:00] -rw-r--r-- 1 boinc boinc      9403 Nov 23 12:09 stderr.txt
[2025-11-23 12:09:00] No HITS result produced
[2025-11-23 12:09:00]  *** Contents of shared directory: ***
[2025-11-23 12:09:00] total 398328
[2025-11-23 12:09:00] -rw-r--r-- 2 boinc boinc 407106286 Nov 23 12:04 ATLAS.root_0
[2025-11-23 12:09:00] -rw-r--r-- 2 boinc boinc    590100 Nov 23 12:04 input.tar.gz
[2025-11-23 12:09:00] -rw-r--r-- 2 boinc boinc     15847 Nov 23 12:04 start_atlas.sh
[2025-11-23 12:09:00] -rw------- 1 boinc boinc    163840 Nov 23 12:09 result.tar.gz
12:09:01 (3286443): run_atlas exited; CPU time 30.428145
12:09:01 (3286443): called boinc_finish(0)

</stderr_txt>
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