Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:50:04 (21904): wrapper (7.7.26015): starting
01:50:04 (21904): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 01:50:04] Arguments: --nthreads 8
[2025-11-26 01:50:04] Threads: 8
[2025-11-26 01:50:04] Checking for CVMFS
[2025-11-26 01:50:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:50:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:50:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:50:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:50:07] 2.11.2.0 21664 171477 143352 153303 0 278 14927093 25165824 2960 130560 10 57451673 99.882 31447176 2331 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 01:50:07] CVMFS is ok
[2025-11-26 01:50:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:50:07] Checking for apptainer binary...
[2025-11-26 01:50:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:50:07] Running /usr/bin/apptainer --version
[2025-11-26 01:50:07] apptainer version 1.3.2-1.el7
[2025-11-26 01:50:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:50:30] cg-vwn258.simple-grid.lan
[2025-11-26 01:50:30] apptainer works
[2025-11-26 01:50:30] Set ATHENA_PROC_NUMBER=8
[2025-11-26 01:50:30] Set ATHENA_CORE_NUMBER=8
[2025-11-26 01:50:30] Starting ATLAS job with PandaID=6895340064
[2025-11-26 01:50:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:03:48]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:03:48] 2025-11-27 00:02:26,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:03:48] 2025-11-27 00:02:27,700 | INFO     | time since job start (83475s) is within the limit (172800.0s)
[2025-11-27 01:03:48] 2025-11-27 00:02:28,545 | INFO     | monitor loop #5560: job 0:6895340064 is in state 'finished'
[2025-11-27 01:03:48] 2025-11-27 00:02:28,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:03:48] 2025-11-27 00:02:29,708 | INFO     | time since job start (83477s) is within the limit (172800.0s)
[2025-11-27 01:03:48] 2025-11-27 00:02:31,052 | INFO     | monitor loop #5561: job 0:6895340064 is in state 'finished'
[2025-11-27 01:03:48] 2025-11-27 00:02:31,052 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:03:48] 2025-11-27 00:02:31,715 | INFO     | time since job start (83479s) is within the limit (172800.0s)
[2025-11-27 01:03:48] 2025-11-27 00:02:33,561 | INFO     | monitor loop #5562: job 0:6895340064 is in state 'finished'
[2025-11-27 01:03:48] 2025-11-27 00:02:33,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:03:48] 2025-11-27 00:02:33,724 | INFO     | time since job start (83481s) is within the limit (172800.0s)
[2025-11-27 01:03:48] 2025-11-27 00:02:35,731 | INFO     | time since job start (83483s) is within the limit (172800.0s)
[2025-11-27 01:03:48] 2025-11-27 00:02:35,957 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 01:03:48] 2025-11-27 00:02:35,958 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 01:03:48] 2025-11-27 00:02:35,959 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6895340064/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:03:48] 2025-11-27 00:02:35,960 | INFO     | extracted standard info from prmon json
[2025-11-27 01:03:48] 2025-11-27 00:02:35,960 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:03:48] 2025-11-27 00:02:35,961 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:03:48] 2025-11-27 00:02:35,986 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:03:48] 2025-11-27 00:02:35,988 | INFO     | sum of square deviations: 790367016293.76
[2025-11-27 01:03:48] 2025-11-27 00:02:36,054 | INFO     | sum of deviations: 2342044955084.052
[2025-11-27 01:03:48] 2025-11-27 00:02:36,054 | INFO     | mean x: 1764159958.600293
[2025-11-27 01:03:48] 2025-11-27 00:02:36,054 | INFO     | mean y: 2860146.3828696925
[2025-11-27 01:03:48] 2025-11-27 00:02:36,055 | INFO     | intersect: -5224764293.685412
[2025-11-27 01:03:48] 2025-11-27 00:02:36,056 | INFO     | chi2: 13.790986714920864
[2025-11-27 01:03:48] 2025-11-27 00:02:36,058 | INFO     | sum of square deviations: 781720177685.184
[2025-11-27 01:03:48] 2025-11-27 00:02:36,072 | INFO     | monitor loop #5563: job 0:6895340064 is in state 'finished'
[2025-11-27 01:03:48] 2025-11-27 00:02:36,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:03:48] 2025-11-27 00:02:36,120 | INFO     | sum of deviations: 2803060296987.8975
[2025-11-27 01:03:48] 2025-11-27 00:02:36,121 | INFO     | mean x: 1764159806.104335
[2025-11-27 01:03:48] 2025-11-27 00:02:36,121 | INFO     | mean y: 2868276.2542248345
[2025-11-27 01:03:48] 2025-11-27 00:02:36,121 | INFO     | intersect: -6322983929.16807
[2025-11-27 01:03:48] 2025-11-27 00:02:36,123 | INFO     | chi2: 10.481725263962359
[2025-11-27 01:03:48] 2025-11-27 00:02:36,123 | INFO     | current chi2=10.481725263962359 (change=23.995827995237793 %)
[2025-11-27 01:03:48] 2025-11-27 00:02:36,123 | INFO     | right removable region: 1360
[2025-11-27 01:03:48] 2025-11-27 00:02:36,125 | INFO     | sum of square deviations: 781719260855.1842
[2025-11-27 01:03:48] 2025-11-27 00:02:36,186 | INFO     | sum of deviations: 1913800018391.3276
[2025-11-27 01:03:48] 2025-11-27 00:02:36,186 | INFO     | mean x: 1764160111.104335
[2025-11-27 01:03:48] 2025-11-27 00:02:36,187 | INFO     | mean y: 2867694.300514328
[2025-11-27 01:03:48] 2025-11-27 00:02:36,187 | INFO     | intersect: -4316137634.266135
[2025-11-27 01:03:48] 2025-11-27 00:02:36,188 | INFO     | chi2: 11.157593381746418
[2025-11-27 01:03:48] 2025-11-27 00:02:36,189 | INFO     | current chi2=11.157593381746418 (change=19.095032049630664 %)
[2025-11-27 01:03:48] 2025-11-27 00:02:36,189 | INFO     | left removable region: 10
[2025-11-27 01:03:48] 2025-11-27 00:02:36,191 | INFO     | sum of square deviations: 762918213403.2744
[2025-11-27 01:03:48] 2025-11-27 00:02:36,253 | INFO     | sum of deviations: 2383726386390.806
[2025-11-27 01:03:48] 2025-11-27 00:02:36,253 | INFO     | mean x: 1764160080.6096296
[2025-11-27 01:03:48] 2025-11-27 00:02:36,253 | INFO     | mean y: 2879296.460740741
[2025-11-27 01:03:48] 2025-11-27 00:02:36,254 | INFO     | intersect: -5509212117.909019
[2025-11-27 01:03:48] 2025-11-27 00:02:36,255 | INFO     | chi2: 7.020532755042247
[2025-11-27 01:03:48] 2025-11-27 00:02:36,256 | INFO     | current memory leak: 3.12 B/s (using 1350 data points, chi2=7.02)
[2025-11-27 01:03:48] 2025-11-27 00:02:36,258 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 01:03:48] 2025-11-27 00:02:36,258 | INFO     | ..............................
[2025-11-27 01:03:48] 2025-11-27 00:02:36,258 | INFO     | . Timing measurements:
[2025-11-27 01:03:48] 2025-11-27 00:02:36,258 | INFO     | . get job = 0 s
[2025-11-27 01:03:48] 2025-11-27 00:02:36,258 | INFO     | . initial setup = 2 s
[2025-11-27 01:03:48] 2025-11-27 00:02:36,258 | INFO     | . payload setup = 14 s
[2025-11-27 01:03:48] 2025-11-27 00:02:36,258 | INFO     | . stage-in = 0 s
[2025-11-27 01:03:48] 2025-11-27 00:02:36,258 | INFO     | . payload execution = 83344 s
[2025-11-27 01:03:48] 2025-11-27 00:02:36,258 | INFO     | . stage-out = 7 s
[2025-11-27 01:03:48] 2025-11-27 00:02:36,259 | INFO     | . log creation = 1 s
[2025-11-27 01:03:48] 2025-11-27 00:02:36,259 | INFO     | ..............................
[2025-11-27 01:03:48] 2025-11-27 00:02:36,384 | INFO     | 
[2025-11-27 01:03:48] 2025-11-27 00:02:36,384 | INFO     | job summary report
[2025-11-27 01:03:48] 2025-11-27 00:02:36,385 | INFO     | --------------------------------------------------
[2025-11-27 01:03:48] 2025-11-27 00:02:36,385 | INFO     | PanDA job id: 6895340064
[2025-11-27 01:03:48] 2025-11-27 00:02:36,385 | INFO     | task id: 47556137
[2025-11-27 01:03:48] 2025-11-27 00:02:36,385 | INFO     | errors: (none)
[2025-11-27 01:03:48] 2025-11-27 00:02:36,385 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:03:48] 2025-11-27 00:02:36,385 | INFO     | pilot state: finished 
[2025-11-27 01:03:48] 2025-11-27 00:02:36,385 | INFO     | transexitcode: 0
[2025-11-27 01:03:48] 2025-11-27 00:02:36,385 | INFO     | exeerrorcode: 0
[2025-11-27 01:03:48] 2025-11-27 00:02:36,386 | INFO     | exeerrordiag: 
[2025-11-27 01:03:48] 2025-11-27 00:02:36,386 | INFO     | exitcode: 0
[2025-11-27 01:03:48] 2025-11-27 00:02:36,386 | INFO     | exitmsg: OK
[2025-11-27 01:03:48] 2025-11-27 00:02:36,386 | INFO     | cpuconsumptiontime: 317632 s
[2025-11-27 01:03:48] 2025-11-27 00:02:36,386 | INFO     | nevents: 1000
[2025-11-27 01:03:48] 2025-11-27 00:02:36,386 | INFO     | neventsw: 0
[2025-11-27 01:03:48] 2025-11-27 00:02:36,386 | INFO     | pid: 32202
[2025-11-27 01:03:48] 2025-11-27 00:02:36,386 | INFO     | pgrp: 32202
[2025-11-27 01:03:48] 2025-11-27 00:02:36,387 | INFO     | corecount: 8
[2025-11-27 01:03:48] 2025-11-27 00:02:36,387 | INFO     | event service: False
[2025-11-27 01:03:48] 2025-11-27 00:02:36,387 | INFO     | sizes: {0: 2284263, 1: 2284263, 8: 2284553, 11: 2284581, 83363: 2344905, 83372: 2354083, 83465: 2354273}
[2025-11-27 01:03:48] 2025-11-27 00:02:36,387 | INFO     | --------------------------------------------------
[2025-11-27 01:03:48] 2025-11-27 00:02:36,387 | INFO     | 
[2025-11-27 01:03:48] 2025-11-27 00:02:36,387 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-27 01:03:48] 2025-11-27 00:02:36,931 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,931 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,931 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,931 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,931 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,932 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,932 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,932 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,932 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,933 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,933 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,933 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,933 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,933 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:03:48] 2025-11-27 00:02:36,933 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,933 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:03:48] 2025-11-27 00:02:36,933 | INFO     | job 6895340064 has completed (purged errors)
[2025-11-27 01:03:48] 2025-11-27 00:02:36,934 | INFO     | overall cleanup function is called
[2025-11-27 01:03:48] 2025-11-27 00:02:36,922 | INFO     | PID=25716 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 01:03:48] 2025-11-27 00:02:36,937 | INFO     | .. there are 9 such processes running
[2025-11-27 01:03:48] 2025-11-27 00:02:37,957 | INFO     | --- collectZombieJob: --- 10, [32202]
[2025-11-27 01:03:48] 2025-11-27 00:02:37,958 | INFO     | zombie collector waiting for pid 32202
[2025-11-27 01:03:48] 2025-11-27 00:02:37,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:03:48] 2025-11-27 00:02:37,958 | INFO     | collected zombie processes
[2025-11-27 01:03:48] 2025-11-27 00:02:37,958 | INFO     | will attempt to kill all subprocesses of pid=32202
[2025-11-27 01:03:48] 2025-11-27 00:02:38,088 | INFO     | process IDs to be killed: [32202] (in reverse order)
[2025-11-27 01:03:48] 2025-11-27 00:02:38,897 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:03:48] 2025-11-27 00:02:38,897 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:03:48] 2025-11-27 00:02:38,900 | INFO     | did not find any defunct processes belonging to 32202
[2025-11-27 01:03:48] 2025-11-27 00:02:38,902 | INFO     | did not find any defunct processes belonging to 32202
[2025-11-27 01:03:48] 2025-11-27 00:02:38,956 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:03:48] 2025-11-27 00:02:38,957 | INFO     | ready for new job
[2025-11-27 01:03:48] 2025-11-27 00:02:38,957 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:03:48] 2025-11-27 00:02:38,962 | INFO     | ***************************************
[2025-11-27 01:03:48] 2025-11-27 00:02:38,962 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:03:48] 2025-11-27 00:02:38,962 | INFO     | ***************************************
[2025-11-27 01:03:48] 2025-11-27 00:02:38,962 | INFO     | 
[2025-11-27 01:03:48] 2025-11-27 00:02:38,963 | INFO     | pilot is running in a VM
[2025-11-27 01:03:48] 2025-11-27 00:02:38,963 | INFO     | architecture information:
[2025-11-27 01:03:48] 2025-11-27 00:02:38,975 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:03:48] 2025-11-27 00:02:39,213 | INFO     | cat /etc/os-release:
[2025-11-27 01:03:48] NAME="CentOS Linux"
[2025-11-27 01:03:48] VERSION="7 (Core)"
[2025-11-27 01:03:48] ID="centos"
[2025-11-27 01:03:48] ID_LIKE="rhel fedora"
[2025-11-27 01:03:48] VERSION_ID="7"
[2025-11-27 01:03:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:03:48] ANSI_COLOR="0;31"
[2025-11-27 01:03:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:03:48] HOME_URL="https://www.centos.org/"
[2025-11-27 01:03:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:03:48] 
[2025-11-27 01:03:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:03:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:03:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:03:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:03:48] 
[2025-11-27 01:03:48] 2025-11-27 00:02:39,213 | INFO     | ***************************************
[2025-11-27 01:03:48] 2025-11-27 00:02:39,716 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-27 01:03:48] 2025-11-27 00:02:39,930 | INFO     | sufficient remaining disk space (495353593856 B)
[2025-11-27 01:03:48] 2025-11-27 00:02:39,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:03:48] 2025-11-27 00:02:39,930 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:03:48] 2025-11-27 00:02:39,930 | INFO     | update_server=False
[2025-11-27 01:03:48] 2025-11-27 00:02:39,931 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:03:48] 2025-11-27 00:02:39,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:03:48] 2025-11-27 00:02:39,933 | INFO     | aborting loop
[2025-11-27 01:03:48] 2025-11-27 00:02:39,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:03:48] 2025-11-27 00:02:40,257 | INFO     | all payload control threads have been joined
[2025-11-27 01:03:48] 2025-11-27 00:02:40,278 | INFO     | all data control threads have been joined
[2025-11-27 01:03:48] 2025-11-27 00:02:40,936 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:40,939 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:41,133 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:41,263 | INFO     | [payload] control thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:41,271 | INFO     | all job control threads have been joined
[2025-11-27 01:03:48] 2025-11-27 00:02:41,284 | INFO     | [data] control thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:41,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:03:48] 2025-11-27 00:02:41,397 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:03:48] 2025-11-27 00:02:41,462 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:41,537 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:41,829 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:41,989 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:42,019 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:42,093 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:42,141 | INFO     | [job] validate thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:42,277 | INFO     | [job] control thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:42,403 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:43,375 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:02:43,943 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:03:48] 2025-11-27 00:03:09,118 | INFO     | PID=25716 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 01:03:48] 2025-11-27 00:03:09,118 | INFO     | .. there are 9 such processes running
[2025-11-27 01:03:48] 2025-11-27 00:03:09,118 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:03:48] 2025-11-27 00:03:09,118 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:03:48] 2025-11-27 00:03:09,118 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:03:48] 2025-11-27 00:03:38,013 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:03:48] 2025-11-27 00:03:38,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140459346417472)>', '<ExcThread(monitor, started 140458902673152)>']
[2025-11-27 01:03:48] 2025-11-27 00:03:39,295 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:03:48] 2025-11-27 00:03:39,295 | INFO     | [monitor] control thread has ended
[2025-11-27 01:03:48] 2025-11-27 00:03:43,745 | INFO     | all workflow threads have been joined
[2025-11-27 01:03:48] 2025-11-27 00:03:43,746 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:03:48] 2025-11-27 00:03:43,746 | INFO     | traces error code: 0
[2025-11-27 01:03:48] 2025-11-27 00:03:43,746 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:03:48] 2025-11-27 00:03:43,956 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:03:48] 2025-11-27 00:03:43,983 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:03:48] 2025-11-27 00:03:44,016 [wrapper] pilotpid: 25716
[2025-11-27 01:03:48] 2025-11-27 00:03:44,041 [wrapper] Pilot exit status: 0
[2025-11-27 01:03:48] 2025-11-27 00:03:44,254 [wrapper] pandaids: 6895340064
[2025-11-27 01:03:48] 2025-11-27 00:03:45,170 [wrapper] cleanup supervisor_pilot 29511 25717
[2025-11-27 01:03:48] 2025-11-27 00:03:45,204 [wrapper] Test setup, not cleaning
[2025-11-27 01:03:48] 2025-11-27 00:03:45,292 [wrapper] apfmon messages muted
[2025-11-27 01:03:48] 2025-11-27 00:03:45,401 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:03:48] 2025-11-27 00:03:45,511 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:03:48]  *** Error codes and diagnostics ***
[2025-11-27 01:03:48]     "exeErrorCode": 0,
[2025-11-27 01:03:48]     "exeErrorDiag": "",
[2025-11-27 01:03:48]     "pilotErrorCode": 0,
[2025-11-27 01:03:48]     "pilotErrorDiag": "",
[2025-11-27 01:03:48]  *** Listing of results directory ***
[2025-11-27 01:03:48] total 1325204
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc    576529 Nov 22 13:20 pilot3.tar.gz
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc      5112 Nov 22 13:37 queuedata.json
[2025-11-27 01:03:48] -rwx------. 1 boinc boinc     36292 Nov 22 13:37 runpilot2-wrapper.sh
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc       100 Nov 26 01:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:03:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 01:50 run_atlas
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc       105 Nov 26 01:50 job.xml
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc      6390 Nov 26 01:50 init_data.xml
[2025-11-27 01:03:48] -rw-r--r--. 2 boinc boinc 409840263 Nov 26 01:50 EVNT.47483658._000370.pool.root.1
[2025-11-27 01:03:48] -rw-r--r--. 2 boinc boinc     15847 Nov 26 01:50 start_atlas.sh
[2025-11-27 01:03:48] drwxrwx--x. 2 boinc boinc        68 Nov 26 01:50 shared
[2025-11-27 01:03:48] -rw-r--r--. 2 boinc boinc    590099 Nov 26 01:50 input.tar.gz
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc         0 Nov 26 01:50 boinc_lockfile
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc      2784 Nov 26 01:50 pandaJob.out
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc    991877 Nov 26 01:51 agis_schedconf.cvmfs.json
[2025-11-27 01:03:48] drwx------. 5 boinc boinc      4096 Nov 26 01:51 pilot3
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc       533 Nov 27 00:40 boinc_task_state.xml
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc 916203581 Nov 27 00:59 HITS.47556137._003667.pool.root.1
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc      1031 Nov 27 01:00 memory_monitor_summary.json
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc   1516240 Nov 27 01:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc   2442884 Nov 27 01:01 log.47556137._003667.job.log.tgz.1
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc        95 Nov 27 01:02 pilot_heartbeat.json
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc      8622 Nov 27 01:02 heartbeat.json
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc      4884 Nov 27 01:03 pilotlog.txt
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc  11088546 Nov 27 01:03 log.47556137._003667.job.log.1
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc      8192 Nov 27 01:03 boinc_mmap_file
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc        29 Nov 27 01:03 wrapper_checkpoint.txt
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc       353 Nov 27 01:03 output.list
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc       620 Nov 27 01:03 runtime_log
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc  13547520 Nov 27 01:03 result.tar.gz
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc       662 Nov 27 01:03 xVaKDmS31g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm06HKDm9EWAjn.diag
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc      8817 Nov 27 01:03 runtime_log.err
[2025-11-27 01:03:48] -rw-r--r--. 1 boinc boinc     21457 Nov 27 01:03 stderr.txt
[2025-11-27 01:03:48] HITS file was successfully produced:
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc 916203581 Nov 27 00:59 shared/HITS.pool.root.1
[2025-11-27 01:03:48]  *** Contents of shared directory: ***
[2025-11-27 01:03:48] total 1308796
[2025-11-27 01:03:48] -rw-r--r--. 2 boinc boinc 409840263 Nov 26 01:50 ATLAS.root_0
[2025-11-27 01:03:48] -rw-r--r--. 2 boinc boinc     15847 Nov 26 01:50 start_atlas.sh
[2025-11-27 01:03:48] -rw-r--r--. 2 boinc boinc    590099 Nov 26 01:50 input.tar.gz
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc 916203581 Nov 27 00:59 HITS.pool.root.1
[2025-11-27 01:03:48] -rw-------. 1 boinc boinc  13547520 Nov 27 01:03 result.tar.gz
01:03:50 (21904): run_atlas exited; CPU time 318154.137528
01:03:50 (21904): called boinc_finish(0)

</stderr_txt>
]]>

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