Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:57:01 (31069): wrapper (7.7.26015): starting
06:57:01 (31069): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 06:57:01] Arguments: --nthreads 8
[2025-11-26 06:57:01] Threads: 8
[2025-11-26 06:57:01] Checking for CVMFS
[2025-11-26 06:57:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 06:57:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 06:57:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 06:57:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 06:57:04] 2.11.2.0 31313 284805 142508 153311 2 130 18635042 25165824 1706 130560 9 128457430 99.860 84807581 2954 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 06:57:04] CVMFS is ok
[2025-11-26 06:57:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:57:04] Checking for apptainer binary...
[2025-11-26 06:57:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 06:57:04] Running /usr/bin/apptainer --version
[2025-11-26 06:57:04] apptainer version 1.3.2-1.el7
[2025-11-26 06:57:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:57:13] cg-vwn451.simple-grid.lan
[2025-11-26 06:57:13] apptainer works
[2025-11-26 06:57:13] Set ATHENA_PROC_NUMBER=8
[2025-11-26 06:57:13] Set ATHENA_CORE_NUMBER=8
[2025-11-26 06:57:13] Starting ATLAS job with PandaID=6892537358
[2025-11-26 06:57:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:31:39]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:31:39] 2025-11-27 04:30:53,472 | INFO     | monitor loop #5462: job 0:6892537358 is in state 'finished'
[2025-11-27 05:31:39] 2025-11-27 04:30:53,472 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:31:39] 2025-11-27 04:30:55,200 | INFO     | time since job start (81001s) is within the limit (172800.0s)
[2025-11-27 05:31:39] 2025-11-27 04:30:55,982 | INFO     | monitor loop #5463: job 0:6892537358 is in state 'finished'
[2025-11-27 05:31:39] 2025-11-27 04:30:55,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:31:39] 2025-11-27 04:30:57,208 | INFO     | time since job start (81003s) is within the limit (172800.0s)
[2025-11-27 05:31:39] 2025-11-27 04:30:58,487 | INFO     | monitor loop #5464: job 0:6892537358 is in state 'finished'
[2025-11-27 05:31:39] 2025-11-27 04:30:58,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:31:39] 2025-11-27 04:30:59,216 | INFO     | time since job start (81005s) is within the limit (172800.0s)
[2025-11-27 05:31:39] 2025-11-27 04:31:00,996 | INFO     | monitor loop #5465: job 0:6892537358 is in state 'finished'
[2025-11-27 05:31:39] 2025-11-27 04:31:00,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:31:39] 2025-11-27 04:31:01,223 | INFO     | time since job start (81007s) is within the limit (172800.0s)
[2025-11-27 05:31:39] 2025-11-27 04:31:03,221 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:31:39] 2025-11-27 04:31:03,223 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 05:31:39] 2025-11-27 04:31:03,225 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-6892537358/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:31:39] 2025-11-27 04:31:03,226 | INFO     | extracted standard info from prmon json
[2025-11-27 05:31:39] 2025-11-27 04:31:03,226 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:31:39] 2025-11-27 04:31:03,226 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:31:39] 2025-11-27 04:31:03,263 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:31:39] 2025-11-27 04:31:03,265 | INFO     | sum of square deviations: 709943673571.2628
[2025-11-27 05:31:39] 2025-11-27 04:31:03,310 | INFO     | time since job start (81009s) is within the limit (172800.0s)
[2025-11-27 05:31:39] 2025-11-27 04:31:03,320 | INFO     | sum of deviations: 2523117827054.6177
[2025-11-27 05:31:39] 2025-11-27 04:31:03,320 | INFO     | mean x: 1764177549.596358
[2025-11-27 05:31:39] 2025-11-27 04:31:03,320 | INFO     | mean y: 2848527.2943854323
[2025-11-27 05:31:39] 2025-11-27 04:31:03,320 | INFO     | intersect: -6266983842.765177
[2025-11-27 05:31:39] 2025-11-27 04:31:03,322 | INFO     | chi2: 16.81411645512841
[2025-11-27 05:31:39] 2025-11-27 04:31:03,324 | INFO     | sum of square deviations: 701894930812.73
[2025-11-27 05:31:39] 2025-11-27 04:31:03,418 | INFO     | sum of deviations: 2958359517703.962
[2025-11-27 05:31:39] 2025-11-27 04:31:03,418 | INFO     | mean x: 1764177397.1005332
[2025-11-27 05:31:39] 2025-11-27 04:31:03,418 | INFO     | mean y: 2856772.7730388422
[2025-11-27 05:31:39] 2025-11-27 04:31:03,419 | INFO     | intersect: -7432830200.471459
[2025-11-27 05:31:39] 2025-11-27 04:31:03,420 | INFO     | chi2: 13.64610097721998
[2025-11-27 05:31:39] 2025-11-27 04:31:03,420 | INFO     | current chi2=13.64610097721998 (change=18.841403212371386 %)
[2025-11-27 05:31:39] 2025-11-27 04:31:03,420 | INFO     | right removable region: 1312
[2025-11-27 05:31:39] 2025-11-27 04:31:03,422 | INFO     | sum of square deviations: 701894049362.73
[2025-11-27 05:31:39] 2025-11-27 04:31:03,488 | INFO     | sum of deviations: 2004913591084.7573
[2025-11-27 05:31:39] 2025-11-27 04:31:03,489 | INFO     | mean x: 1764177702.1005332
[2025-11-27 05:31:39] 2025-11-27 04:31:03,489 | INFO     | mean y: 2858343.6230007615
[2025-11-27 05:31:39] 2025-11-27 04:31:03,489 | INFO     | intersect: -5036397731.052945
[2025-11-27 05:31:39] 2025-11-27 04:31:03,491 | INFO     | chi2: 12.750971238294017
[2025-11-27 05:31:39] 2025-11-27 04:31:03,491 | INFO     | current chi2=12.750971238294017 (change=24.165083117377293 %)
[2025-11-27 05:31:39] 2025-11-27 04:31:03,491 | INFO     | left removable region: 10
[2025-11-27 05:31:39] 2025-11-27 04:31:03,493 | INFO     | sum of square deviations: 684400576007.7949
[2025-11-27 05:31:39] 2025-11-27 04:31:03,510 | INFO     | monitor loop #5466: job 0:6892537358 is in state 'finished'
[2025-11-27 05:31:39] 2025-11-27 04:31:03,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:31:39] 2025-11-27 04:31:03,558 | INFO     | sum of deviations: 2163238165653.2537
[2025-11-27 05:31:39] 2025-11-27 04:31:03,558 | INFO     | mean x: 1764177671.609831
[2025-11-27 05:31:39] 2025-11-27 04:31:03,558 | INFO     | mean y: 2875945.1205837172
[2025-11-27 05:31:39] 2025-11-27 04:31:03,558 | INFO     | intersect: -5573297722.763959
[2025-11-27 05:31:39] 2025-11-27 04:31:03,560 | INFO     | chi2: 6.495814295150614
[2025-11-27 05:31:39] 2025-11-27 04:31:03,560 | INFO     | current memory leak: 3.16 B/s (using 1302 data points, chi2=6.50)
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | ..............................
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | . Timing measurements:
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | . get job = 0 s
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | . initial setup = 10 s
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | . payload setup = 173 s
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | . stage-in = 0 s
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | . payload execution = 80540 s
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | . stage-out = 6 s
[2025-11-27 05:31:39] 2025-11-27 04:31:03,562 | INFO     | . log creation = 2 s
[2025-11-27 05:31:39] 2025-11-27 04:31:03,563 | INFO     | ..............................
[2025-11-27 05:31:39] 2025-11-27 04:31:03,782 | INFO     | 
[2025-11-27 05:31:39] 2025-11-27 04:31:03,782 | INFO     | job summary report
[2025-11-27 05:31:39] 2025-11-27 04:31:03,782 | INFO     | --------------------------------------------------
[2025-11-27 05:31:39] 2025-11-27 04:31:03,782 | INFO     | PanDA job id: 6892537358
[2025-11-27 05:31:39] 2025-11-27 04:31:03,782 | INFO     | task id: 47493029
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | errors: (none)
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | pilot state: finished 
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | transexitcode: 0
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | exeerrorcode: 0
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | exeerrordiag: 
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | exitcode: 0
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | exitmsg: OK
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | cpuconsumptiontime: 304926 s
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | nevents: 1000
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | neventsw: 0
[2025-11-27 05:31:39] 2025-11-27 04:31:03,783 | INFO     | pid: 9036
[2025-11-27 05:31:39] 2025-11-27 04:31:03,784 | INFO     | pgrp: 9036
[2025-11-27 05:31:39] 2025-11-27 04:31:03,784 | INFO     | corecount: 8
[2025-11-27 05:31:39] 2025-11-27 04:31:03,784 | INFO     | event service: False
[2025-11-27 05:31:39] 2025-11-27 04:31:03,784 | INFO     | sizes: {0: 2283476, 1: 2284162, 2: 2284361, 13: 2284361, 23: 2284417, 34: 2284445, 45: 2284601, 56: 2284629, 66: 2284657, 77: 2284685, 88: 2284741, 97: 2285311, 98
[2025-11-27 05:31:39] 2025-11-27 04:31:03,784 | INFO     | --------------------------------------------------
[2025-11-27 05:31:39] 2025-11-27 04:31:03,784 | INFO     | 
[2025-11-27 05:31:39] 2025-11-27 04:31:03,784 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2025-11-27 05:31:39] 2025-11-27 04:31:04,202 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,203 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,203 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,203 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,203 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,204 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:31:39] 2025-11-27 04:31:04,205 | INFO     | job 6892537358 has completed (purged errors)
[2025-11-27 05:31:39] 2025-11-27 04:31:04,205 | INFO     | overall cleanup function is called
[2025-11-27 05:31:39] 2025-11-27 04:31:05,220 | INFO     | --- collectZombieJob: --- 10, [9036]
[2025-11-27 05:31:39] 2025-11-27 04:31:05,220 | INFO     | zombie collector waiting for pid 9036
[2025-11-27 05:31:39] 2025-11-27 04:31:05,220 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:31:39] 2025-11-27 04:31:05,221 | INFO     | collected zombie processes
[2025-11-27 05:31:39] 2025-11-27 04:31:05,221 | INFO     | will attempt to kill all subprocesses of pid=9036
[2025-11-27 05:31:39] 2025-11-27 04:31:05,322 | INFO     | process IDs to be killed: [9036] (in reverse order)
[2025-11-27 05:31:39] 2025-11-27 04:31:06,310 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:31:39] 2025-11-27 04:31:06,310 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:31:39] 2025-11-27 04:31:06,326 | INFO     | did not find any defunct processes belonging to 9036
[2025-11-27 05:31:39] 2025-11-27 04:31:06,330 | INFO     | did not find any defunct processes belonging to 9036
[2025-11-27 05:31:39] 2025-11-27 04:31:06,374 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:31:39] 2025-11-27 04:31:06,375 | INFO     | ready for new job
[2025-11-27 05:31:39] 2025-11-27 04:31:06,375 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:31:39] 2025-11-27 04:31:06,380 | INFO     | ***************************************
[2025-11-27 05:31:39] 2025-11-27 04:31:06,380 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:31:39] 2025-11-27 04:31:06,380 | INFO     | ***************************************
[2025-11-27 05:31:39] 2025-11-27 04:31:06,380 | INFO     | 
[2025-11-27 05:31:39] 2025-11-27 04:31:06,381 | INFO     | pilot is running in a VM
[2025-11-27 05:31:39] 2025-11-27 04:31:06,381 | INFO     | architecture information:
[2025-11-27 05:31:39] 2025-11-27 04:31:06,393 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:31:39] 2025-11-27 04:31:06,616 | INFO     | cat /etc/os-release:
[2025-11-27 05:31:39] NAME="CentOS Linux"
[2025-11-27 05:31:39] VERSION="7 (Core)"
[2025-11-27 05:31:39] ID="centos"
[2025-11-27 05:31:39] ID_LIKE="rhel fedora"
[2025-11-27 05:31:39] VERSION_ID="7"
[2025-11-27 05:31:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:31:39] ANSI_COLOR="0;31"
[2025-11-27 05:31:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:31:39] HOME_URL="https://www.centos.org/"
[2025-11-27 05:31:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:31:39] 
[2025-11-27 05:31:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:31:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:31:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:31:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:31:39] 
[2025-11-27 05:31:39] 2025-11-27 04:31:06,617 | INFO     | ***************************************
[2025-11-27 05:31:39] 2025-11-27 04:31:07,120 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2025-11-27 05:31:39] 2025-11-27 04:31:07,419 | INFO     | sufficient remaining disk space (495337865216 B)
[2025-11-27 05:31:39] 2025-11-27 04:31:07,419 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:31:39] 2025-11-27 04:31:07,419 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:31:39] 2025-11-27 04:31:07,419 | INFO     | update_server=False
[2025-11-27 05:31:39] 2025-11-27 04:31:07,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:31:39] 2025-11-27 04:31:07,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:31:39] 2025-11-27 04:31:07,424 | INFO     | aborting loop
[2025-11-27 05:31:39] 2025-11-27 04:31:07,486 | INFO     | all payload control threads have been joined
[2025-11-27 05:31:39] 2025-11-27 04:31:08,425 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:08,430 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:08,492 | INFO     | [payload] control thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:08,512 | INFO     | all data control threads have been joined
[2025-11-27 05:31:39] 2025-11-27 04:31:08,535 | INFO     | [job] validate thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:08,626 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:08,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:31:39] 2025-11-27 04:31:08,721 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:08,749 | INFO     | all job control threads have been joined
[2025-11-27 05:31:39] 2025-11-27 04:31:08,800 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:31:39] 2025-11-27 04:31:08,960 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:09,307 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:09,311 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:09,424 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:31:39] 2025-11-27 04:31:09,518 | INFO     | [data] control thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:09,581 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:09,700 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:09,755 | INFO     | [job] control thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:09,824 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:10,810 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:13,433 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:31:39] 2025-11-27 04:31:14,611 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:31:39] 2025-11-27 04:31:16,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140659651581760)>', '<ExcThread(monitor, started 140659214239488)>']
[2025-11-27 05:31:39] 2025-11-27 04:31:21,371 | INFO     | all workflow threads have been joined
[2025-11-27 05:31:39] 2025-11-27 04:31:21,371 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:31:39] 2025-11-27 04:31:21,371 | INFO     | traces error code: 0
[2025-11-27 05:31:39] 2025-11-27 04:31:21,372 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:31:39] 2025-11-27 04:31:36,505 | INFO     | PID=2499 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 05:31:39] 2025-11-27 04:31:36,506 | INFO     | .. there are 9 such processes running
[2025-11-27 05:31:39] 2025-11-27 04:31:36,506 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:31:39] 2025-11-27 04:31:36,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:31:39] 2025-11-27 04:31:36,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:31:39] 2025-11-27 04:31:36,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:31:39] 2025-11-27 04:31:36,506 | INFO     | [monitor] control thread has ended
[2025-11-27 05:31:39] 2025-11-27 04:31:36,829 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:31:39] 2025-11-27 04:31:36,842 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:31:39] 2025-11-27 04:31:36,854 [wrapper] pilotpid: 2499
[2025-11-27 05:31:39] 2025-11-27 04:31:36,901 [wrapper] Pilot exit status: 0
[2025-11-27 05:31:39] 2025-11-27 04:31:37,039 [wrapper] pandaids: 6892537358
[2025-11-27 05:31:39] 2025-11-27 04:31:37,127 [wrapper] supervise_pilot (15 min periods counter: 91)
[2025-11-27 05:31:39] 2025-11-27 04:31:37,686 [wrapper] cleanup supervisor_pilot  4585 2500
[2025-11-27 05:31:39] 2025-11-27 04:31:37,758 [wrapper] Test setup, not cleaning
[2025-11-27 05:31:39] 2025-11-27 04:31:37,875 [wrapper] apfmon messages muted
[2025-11-27 05:31:39] 2025-11-27 04:31:37,982 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:31:39] 2025-11-27 04:31:37,993 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:31:39]  *** Error codes and diagnostics ***
[2025-11-27 05:31:39]     "exeErrorCode": 0,
[2025-11-27 05:31:39]     "exeErrorDiag": "",
[2025-11-27 05:31:39]     "pilotErrorCode": 0,
[2025-11-27 05:31:39]     "pilotErrorDiag": "",
[2025-11-27 05:31:39]  *** Listing of results directory ***
[2025-11-27 05:31:39] total 1306208
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:27 pilot3.tar.gz
[2025-11-27 05:31:39] -rwx------. 1 boinc boinc     36292 Nov 19 08:31 runpilot2-wrapper.sh
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:31 queuedata.json
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc       100 Nov 26 06:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:31:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 06:57 run_atlas
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc       105 Nov 26 06:57 job.xml
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc      6393 Nov 26 06:57 init_data.xml
[2025-11-27 05:31:39] -rw-r--r--. 2 boinc boinc 410727220 Nov 26 06:57 EVNT.47493027._000216.pool.root.1
[2025-11-27 05:31:39] -rw-r--r--. 2 boinc boinc     15120 Nov 26 06:57 start_atlas.sh
[2025-11-27 05:31:39] drwxrwx--x. 2 boinc boinc        68 Nov 26 06:57 shared
[2025-11-27 05:31:39] -rw-r--r--. 2 boinc boinc    590093 Nov 26 06:57 input.tar.gz
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc         0 Nov 26 06:57 boinc_lockfile
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc      2773 Nov 26 06:57 pandaJob.out
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc    991877 Nov 26 07:00 agis_schedconf.cvmfs.json
[2025-11-27 05:31:39] drwx------. 5 boinc boinc      4096 Nov 26 07:00 pilot3
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc       533 Nov 27 05:12 boinc_task_state.xml
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc 896526090 Nov 27 05:27 HITS.47493029._002112.pool.root.1
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc      1029 Nov 27 05:29 memory_monitor_summary.json
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc   1516240 Nov 27 05:29 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc   2419601 Nov 27 05:29 log.47493029._002112.job.log.tgz.1
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc        95 Nov 27 05:30 pilot_heartbeat.json
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc      8625 Nov 27 05:31 heartbeat.json
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc      8192 Nov 27 05:31 boinc_mmap_file
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc        29 Nov 27 05:31 wrapper_checkpoint.txt
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc       819 Nov 27 05:31 pilotlog.txt
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc  10781240 Nov 27 05:31 log.47493029._002112.job.log.1
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc       353 Nov 27 05:31 output.list
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc       620 Nov 27 05:31 runtime_log
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc  13219840 Nov 27 05:31 result.tar.gz
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc      8717 Nov 27 05:31 runtime_log.err
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc       662 Nov 27 05:31 6emNDm9prf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZsGKDmEoYoZn.diag
[2025-11-27 05:31:39] -rw-r--r--. 1 boinc boinc     21413 Nov 27 05:31 stderr.txt
[2025-11-27 05:31:39] HITS file was successfully produced:
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc 896526090 Nov 27 05:27 shared/HITS.pool.root.1
[2025-11-27 05:31:39]  *** Contents of shared directory: ***
[2025-11-27 05:31:39] total 1290128
[2025-11-27 05:31:39] -rw-r--r--. 2 boinc boinc 410727220 Nov 26 06:57 ATLAS.root_0
[2025-11-27 05:31:39] -rw-r--r--. 2 boinc boinc     15120 Nov 26 06:57 start_atlas.sh
[2025-11-27 05:31:39] -rw-r--r--. 2 boinc boinc    590093 Nov 26 06:57 input.tar.gz
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc 896526090 Nov 27 05:27 HITS.pool.root.1
[2025-11-27 05:31:39] -rw-------. 1 boinc boinc  13219840 Nov 27 05:31 result.tar.gz
05:31:41 (31069): run_atlas exited; CPU time 305465.733512
05:31:41 (31069): called boinc_finish(0)

</stderr_txt>
]]>

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