Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:42:50 (3182405): wrapper (7.7.26015): starting
11:42:50 (3182405): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 11:42:50] Arguments: --nthreads 3
[2025-11-23 11:42:50] Threads: 3
[2025-11-23 11:42:50] Checking for CVMFS
[2025-11-23 11:42:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 11:42:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 11:42:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 11:42:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 11:42:50] 2.9.2.0 2932062 54 60432 153205 1 88 34827251 36864000 0 130560 0 751338 99.998 4052 15063 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 11:42:50] CVMFS is ok
[2025-11-23 11:42:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 11:42:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 11:42:50] Further information can be found at the LHC@home message board.
[2025-11-23 11:42:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 11:42:50] Checking for apptainer binary...
[2025-11-23 11:42:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 11:42:50] Running /usr/bin/apptainer --version
[2025-11-23 11:42:50] apptainer version 1.4.1-1.1
[2025-11-23 11:42:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 11:42:50] thA335
[2025-11-23 11:42:50] apptainer works
[2025-11-23 11:42:50] Set ATHENA_PROC_NUMBER=3
[2025-11-23 11:42:50] Set ATHENA_CORE_NUMBER=3
[2025-11-23 11:42:50] Starting ATLAS job with PandaID=6895333363
[2025-11-23 11:42:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 11:47:09]  *** The last 200 lines of the pilot log: ***
[2025-11-23 11:47:09] 2025-11-23 10:46:21,344 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 11:47:09] 2025-11-23 10:46:21,345 | INFO     | update_server=False
[2025-11-23 11:47:09] 2025-11-23 10:46:21,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 11:47:09] 2025-11-23 10:46:21,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:47:09] 2025-11-23 10:46:21,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:47:09] 2025-11-23 10:46:21,345 | INFO     | aborting loop
[2025-11-23 11:47:09] 2025-11-23 10:46:22,141 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 11:47:09] 2025-11-23 10:46:22,282 | INFO     | all job control threads have been joined
[2025-11-23 11:47:09] 2025-11-23 10:46:22,350 | INFO     | [job] retrieve thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:22,351 | INFO     | [job] queue monitor thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:22,352 | INFO     | [job] job monitor thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:22,392 | INFO     | all data control threads have been joined
[2025-11-23 11:47:09] 2025-11-23 10:46:22,410 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:22,490 | INFO     | [data] copytool_in thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:22,632 | INFO     | [payload] failed_post thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:22,832 | INFO     | all payload control threads have been joined
[2025-11-23 11:47:09] 2025-11-23 10:46:23,149 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:23,232 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:23,288 | INFO     | [job] control thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:23,398 | INFO     | [data] control thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:23,696 | INFO     | [payload] validate_post thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:23,770 | INFO     | [job] validate thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:23,838 | INFO     | [payload] control thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:23,845 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:24,147 | INFO     | [data] copytool_out thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:24,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 11:47:09] 2025-11-23 10:46:28,456 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 11:47:09] 2025-11-23 10:46:51,535 | INFO     | PID=3186139 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 11:47:09] 2025-11-23 10:46:51,535 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 11:47:09] 2025-11-23 10:46:51,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 11:47:09] 2025-11-23 10:46:51,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 11:47:09] 2025-11-23 10:47:02,575 | INFO     | [monitor] cgroup control has ended
[2025-11-23 11:47:09] 2025-11-23 10:47:04,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140589082482496)>', '<ExcThread(monitor, started 140588238239488)>']
[2025-11-23 11:47:09] 2025-11-23 10:47:04,605 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 11:47:09] 2025-11-23 10:47:04,605 | INFO     | [monitor] control thread has ended
[2025-11-23 11:47:09] 2025-11-23 10:47:09,319 | INFO     | all workflow threads have been joined
[2025-11-23 11:47:09] 2025-11-23 10:47:09,319 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 11:47:09] 2025-11-23 10:47:09,320 | INFO     | traces error code: 0
[2025-11-23 11:47:09] 2025-11-23 10:47:09,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 11:47:09] 2025-11-23 10:47:09,366 [wrapper] ==== pilot stdout END ====
[2025-11-23 11:47:09] 2025-11-23 10:47:09,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 11:47:09] 2025-11-23 10:47:09,372 [wrapper] pilotpid: 3186139
[2025-11-23 11:47:09] 2025-11-23 10:47:09,375 [wrapper] Pilot exit status: 0
[2025-11-23 11:47:09] 2025-11-23 10:47:09,383 [wrapper] pandaids: 6895333363
[2025-11-23 11:47:09] 2025-11-23 10:47:09,400 [wrapper] cleanup supervisor_pilot 3186145 3186140
[2025-11-23 11:47:09] 2025-11-23 10:47:09,403 [wrapper] Test setup, not cleaning
[2025-11-23 11:47:09] 2025-11-23 10:47:09,406 [wrapper] apfmon messages muted
[2025-11-23 11:47:09] 2025-11-23 10:47:09,408 [wrapper] ==== wrapper stdout END ====
[2025-11-23 11:47:09] 2025-11-23 10:47:09,411 [wrapper] ==== wrapper stderr END ====
[2025-11-23 11:47:09]  *** Error codes and diagnostics ***
[2025-11-23 11:47:09]     "exeErrorCode": 65,
[2025-11-23 11:47:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 11:47:09]     "pilotErrorCode": 1305,
[2025-11-23 11:47:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 11:47:09]  *** Listing of results directory ***
[2025-11-23 11:47:09] total 403940
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc    576529 Nov 22 02:28 pilot3.tar.gz
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc      5112 Nov 22 02:29 queuedata.json
[2025-11-23 11:47:09] -rwx------ 1 boinc boinc     36292 Nov 22 02:30 runpilot2-wrapper.sh
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc       100 Nov 23 11:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 11:47:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 11:42 run_atlas
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc       105 Nov 23 11:42 job.xml
[2025-11-23 11:47:09] -rw-r--r-- 2 boinc boinc 409428980 Nov 23 11:42 EVNT.47483658._000199.pool.root.1
[2025-11-23 11:47:09] -rw-r--r-- 2 boinc boinc    590094 Nov 23 11:42 input.tar.gz
[2025-11-23 11:47:09] -rw-r--r-- 2 boinc boinc     15847 Nov 23 11:42 start_atlas.sh
[2025-11-23 11:47:09] drwxrwx--x 2 boinc boinc      4096 Nov 23 11:42 shared
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc         0 Nov 23 11:42 boinc_setup_complete
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc      6194 Nov 23 11:42 init_data.xml
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc         0 Nov 23 11:42 boinc_lockfile
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc      2785 Nov 23 11:42 pandaJob.out
[2025-11-23 11:47:09] -rw------- 1 boinc boinc    989784 Nov 23 11:43 agis_schedconf.cvmfs.json
[2025-11-23 11:47:09] -rw------- 1 boinc boinc   1526164 Nov 23 11:43 agis_ddmendpoints.agis.ALL.json
[2025-11-23 11:47:09] drwx------ 5 boinc boinc      4096 Nov 23 11:43 pilot3
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc       523 Nov 23 11:43 boinc_task_state.xml
[2025-11-23 11:47:09] -rw------- 1 boinc boinc       957 Nov 23 11:44 memory_monitor_summary.json
[2025-11-23 11:47:09] -rw------- 1 boinc boinc     55732 Nov 23 11:44 log.47556137._001976.job.log.tgz.1
[2025-11-23 11:47:09] -rw------- 1 boinc boinc        95 Nov 23 11:46 pilot_heartbeat.json
[2025-11-23 11:47:09] -rw------- 1 boinc boinc      8403 Nov 23 11:46 heartbeat.json
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc        23 Nov 23 11:47 wrapper_checkpoint.txt
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc      8192 Nov 23 11:47 boinc_mmap_file
[2025-11-23 11:47:09] -rw------- 1 boinc boinc      4752 Nov 23 11:47 pilotlog.txt
[2025-11-23 11:47:09] -rw------- 1 boinc boinc     93763 Nov 23 11:47 log.47556137._001976.job.log.1
[2025-11-23 11:47:09] -rw------- 1 boinc boinc       186 Nov 23 11:47 output.list
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc       620 Nov 23 11:47 runtime_log
[2025-11-23 11:47:09] -rw------- 1 boinc boinc    174080 Nov 23 11:47 result.tar.gz
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc      8744 Nov 23 11:47 runtime_log.err
[2025-11-23 11:47:09] -rw------- 1 boinc boinc       649 Nov 23 11:47 qaBMDmcdrg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmypJKDm6XD4gn.diag
[2025-11-23 11:47:09] -rw-r--r-- 1 boinc boinc      7890 Nov 23 11:47 stderr.txt
[2025-11-23 11:47:09] No HITS result produced
[2025-11-23 11:47:09]  *** Contents of shared directory: ***
[2025-11-23 11:47:09] total 400608
[2025-11-23 11:47:09] -rw-r--r-- 2 boinc boinc 409428980 Nov 23 11:42 ATLAS.root_0
[2025-11-23 11:47:09] -rw-r--r-- 2 boinc boinc    590094 Nov 23 11:42 input.tar.gz
[2025-11-23 11:47:09] -rw-r--r-- 2 boinc boinc     15847 Nov 23 11:42 start_atlas.sh
[2025-11-23 11:47:09] -rw------- 1 boinc boinc    174080 Nov 23 11:47 result.tar.gz
11:47:11 (3182405): run_atlas exited; CPU time 32.074999
11:47:11 (3182405): called boinc_finish(0)

</stderr_txt>
]]>

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