Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:03:14 (21343): wrapper (7.7.26015): starting
02:03:14 (21343): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 02:03:14] Arguments: --nthreads 8
[2025-11-26 02:03:14] Threads: 8
[2025-11-26 02:03:14] Checking for CVMFS
[2025-11-26 02:03:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 02:03:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 02:03:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 02:03:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 02:03:16] 2.11.2.0 18802 284635 141084 153303 2 278 18512084 25165825 1706 130560 11 139573966 99.890 77155330 2632 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 02:03:16] CVMFS is ok
[2025-11-26 02:03:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 02:03:16] Checking for apptainer binary...
[2025-11-26 02:03:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 02:03:16] Running /usr/bin/apptainer --version
[2025-11-26 02:03:16] apptainer version 1.3.2-1.el7
[2025-11-26 02:03:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 02:03:21] cg-vwn230.simple-grid.lan
[2025-11-26 02:03:21] apptainer works
[2025-11-26 02:03:21] Set ATHENA_PROC_NUMBER=8
[2025-11-26 02:03:21] Set ATHENA_CORE_NUMBER=8
[2025-11-26 02:03:21] Starting ATLAS job with PandaID=6891071725
[2025-11-26 02:03:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:05:43]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:05:43] 2025-11-27 01:04:32,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:05:43] 2025-11-27 01:04:34,057 | INFO     | time since job start (86250s) is within the limit (172800.0s)
[2025-11-27 02:05:43] 2025-11-27 01:04:35,426 | INFO     | monitor loop #5800: job 0:6891071725 is in state 'finished'
[2025-11-27 02:05:43] 2025-11-27 01:04:35,427 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:05:43] 2025-11-27 01:04:36,064 | INFO     | time since job start (86252s) is within the limit (172800.0s)
[2025-11-27 02:05:43] 2025-11-27 01:04:37,931 | INFO     | monitor loop #5801: job 0:6891071725 is in state 'finished'
[2025-11-27 02:05:43] 2025-11-27 01:04:37,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:05:43] 2025-11-27 01:04:38,071 | INFO     | time since job start (86254s) is within the limit (172800.0s)
[2025-11-27 02:05:43] 2025-11-27 01:04:40,078 | INFO     | time since job start (86256s) is within the limit (172800.0s)
[2025-11-27 02:05:43] 2025-11-27 01:04:40,442 | INFO     | monitor loop #5802: job 0:6891071725 is in state 'finished'
[2025-11-27 02:05:43] 2025-11-27 01:04:40,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:05:43] 2025-11-27 01:04:42,085 | INFO     | time since job start (86258s) is within the limit (172800.0s)
[2025-11-27 02:05:43] 2025-11-27 01:04:42,948 | INFO     | monitor loop #5803: job 0:6891071725 is in state 'finished'
[2025-11-27 02:05:43] 2025-11-27 01:04:42,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:05:43] 2025-11-27 01:04:43,092 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:05:43] 2025-11-27 01:04:43,093 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 02:05:43] 2025-11-27 01:04:43,095 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6891071725/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:05:43] 2025-11-27 01:04:43,096 | INFO     | extracted standard info from prmon json
[2025-11-27 02:05:43] 2025-11-27 01:04:43,096 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:05:43] 2025-11-27 01:04:43,096 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:05:43] 2025-11-27 01:04:43,144 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:05:43] 2025-11-27 01:04:43,147 | INFO     | sum of square deviations: 863692999927.5787
[2025-11-27 02:05:43] 2025-11-27 01:04:43,221 | INFO     | sum of deviations: 2718563698271.3584
[2025-11-27 02:05:43] 2025-11-27 01:04:43,221 | INFO     | mean x: 1764162499.1080313
[2025-11-27 02:05:43] 2025-11-27 01:04:43,221 | INFO     | mean y: 2857777.852878465
[2025-11-27 02:05:43] 2025-11-27 01:04:43,221 | INFO     | intersect: -5550027481.526228
[2025-11-27 02:05:43] 2025-11-27 01:04:43,223 | INFO     | chi2: 13.27098147289275
[2025-11-27 02:05:43] 2025-11-27 01:04:43,225 | INFO     | sum of square deviations: 854518317338.9188
[2025-11-27 02:05:43] 2025-11-27 01:04:43,335 | INFO     | sum of deviations: 3185117179282.218
[2025-11-27 02:05:43] 2025-11-27 01:04:43,335 | INFO     | mean x: 1764162346.6119828
[2025-11-27 02:05:43] 2025-11-27 01:04:43,335 | INFO     | mean y: 2865531.6419400857
[2025-11-27 02:05:43] 2025-11-27 01:04:43,335 | INFO     | intersect: -6572843476.83801
[2025-11-27 02:05:43] 2025-11-27 01:04:43,337 | INFO     | chi2: 10.073253173818756
[2025-11-27 02:05:43] 2025-11-27 01:04:43,338 | INFO     | current chi2=10.073253173818756 (change=24.095642855094475 %)
[2025-11-27 02:05:43] 2025-11-27 01:04:43,338 | INFO     | right removable region: 1401
[2025-11-27 02:05:43] 2025-11-27 01:04:43,340 | INFO     | sum of square deviations: 854517366348.9178
[2025-11-27 02:05:43] 2025-11-27 01:04:43,418 | INFO     | sum of deviations: 2276409741904.704
[2025-11-27 02:05:43] 2025-11-27 01:04:43,419 | INFO     | mean x: 1764162651.6119828
[2025-11-27 02:05:43] 2025-11-27 01:04:43,419 | INFO     | mean y: 2865122.922253923
[2025-11-27 02:05:43] 2025-11-27 01:04:43,419 | INFO     | intersect: -4696813554.870879
[2025-11-27 02:05:43] 2025-11-27 01:04:43,420 | INFO     | chi2: 10.631318752232563
[2025-11-27 02:05:43] 2025-11-27 01:04:43,421 | INFO     | current chi2=10.631318752232563 (change=19.890486065796647 %)
[2025-11-27 02:05:43] 2025-11-27 01:04:43,421 | INFO     | left removable region: 10
[2025-11-27 02:05:43] 2025-11-27 01:04:43,423 | INFO     | sum of square deviations: 834561922870.3658
[2025-11-27 02:05:43] 2025-11-27 01:04:43,526 | INFO     | sum of deviations: 2719678608924.1084
[2025-11-27 02:05:43] 2025-11-27 01:04:43,527 | INFO     | mean x: 1764162621.115744
[2025-11-27 02:05:43] 2025-11-27 01:04:43,527 | INFO     | mean y: 2876743.17325665
[2025-11-27 02:05:43] 2025-11-27 01:04:43,527 | INFO     | intersect: -5746193771.342958
[2025-11-27 02:05:43] 2025-11-27 01:04:43,529 | INFO     | chi2: 6.5624340559196
[2025-11-27 02:05:43] 2025-11-27 01:04:43,529 | INFO     | current memory leak: 3.26 B/s (using 1391 data points, chi2=6.56)
[2025-11-27 02:05:43] 2025-11-27 01:04:43,530 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 02:05:43] 2025-11-27 01:04:43,530 | INFO     | ..............................
[2025-11-27 02:05:43] 2025-11-27 01:04:43,531 | INFO     | . Timing measurements:
[2025-11-27 02:05:43] 2025-11-27 01:04:43,531 | INFO     | . get job = 0 s
[2025-11-27 02:05:43] 2025-11-27 01:04:43,531 | INFO     | . initial setup = 14 s
[2025-11-27 02:05:43] 2025-11-27 01:04:43,531 | INFO     | . payload setup = 148 s
[2025-11-27 02:05:43] 2025-11-27 01:04:43,531 | INFO     | . stage-in = 0 s
[2025-11-27 02:05:43] 2025-11-27 01:04:43,531 | INFO     | . payload execution = 85801 s
[2025-11-27 02:05:43] 2025-11-27 01:04:43,531 | INFO     | . stage-out = 5 s
[2025-11-27 02:05:43] 2025-11-27 01:04:43,531 | INFO     | . log creation = 2 s
[2025-11-27 02:05:43] 2025-11-27 01:04:43,531 | INFO     | ..............................
[2025-11-27 02:05:43] 2025-11-27 01:04:43,713 | INFO     | PID=25179 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:05:43] 2025-11-27 01:04:43,713 | INFO     | .. there are 9 such processes running
[2025-11-27 02:05:43] 2025-11-27 01:04:43,894 | INFO     | 
[2025-11-27 02:05:43] 2025-11-27 01:04:43,895 | INFO     | job summary report
[2025-11-27 02:05:43] 2025-11-27 01:04:43,895 | INFO     | --------------------------------------------------
[2025-11-27 02:05:43] 2025-11-27 01:04:43,895 | INFO     | PanDA job id: 6891071725
[2025-11-27 02:05:43] 2025-11-27 01:04:43,895 | INFO     | task id: 47483661
[2025-11-27 02:05:43] 2025-11-27 01:04:43,895 | INFO     | errors: (none)
[2025-11-27 02:05:43] 2025-11-27 01:04:43,895 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:05:43] 2025-11-27 01:04:43,895 | INFO     | pilot state: finished 
[2025-11-27 02:05:43] 2025-11-27 01:04:43,895 | INFO     | transexitcode: 0
[2025-11-27 02:05:43] 2025-11-27 01:04:43,895 | INFO     | exeerrorcode: 0
[2025-11-27 02:05:43] 2025-11-27 01:04:43,896 | INFO     | exeerrordiag: 
[2025-11-27 02:05:43] 2025-11-27 01:04:43,896 | INFO     | exitcode: 0
[2025-11-27 02:05:43] 2025-11-27 01:04:43,896 | INFO     | exitmsg: OK
[2025-11-27 02:05:43] 2025-11-27 01:04:43,896 | INFO     | cpuconsumptiontime: 326394 s
[2025-11-27 02:05:43] 2025-11-27 01:04:43,896 | INFO     | nevents: 1000
[2025-11-27 02:05:43] 2025-11-27 01:04:43,896 | INFO     | neventsw: 0
[2025-11-27 02:05:43] 2025-11-27 01:04:43,896 | INFO     | pid: 31746
[2025-11-27 02:05:43] 2025-11-27 01:04:43,896 | INFO     | pgrp: 31746
[2025-11-27 02:05:43] 2025-11-27 01:04:43,896 | INFO     | corecount: 8
[2025-11-27 02:05:43] 2025-11-27 01:04:43,897 | INFO     | event service: False
[2025-11-27 02:05:43] 2025-11-27 01:04:43,897 | INFO     | sizes: {0: 2284133, 1: 2284332, 12: 2284332, 23: 2284360, 34: 2284388, 44: 2284416, 55: 2284572, 66: 2284600, 76: 2284628, 87: 2284684, 98: 2284712, 105: 2285282, 
[2025-11-27 02:05:43] 2025-11-27 01:04:43,897 | INFO     | --------------------------------------------------
[2025-11-27 02:05:43] 2025-11-27 01:04:43,897 | INFO     | 
[2025-11-27 02:05:43] 2025-11-27 01:04:43,897 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-27 02:05:43] 2025-11-27 01:04:44,349 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,350 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:05:43] 2025-11-27 01:04:44,351 | INFO     | job 6891071725 has completed (purged errors)
[2025-11-27 02:05:43] 2025-11-27 01:04:44,352 | INFO     | overall cleanup function is called
[2025-11-27 02:05:43] 2025-11-27 01:04:45,369 | INFO     | --- collectZombieJob: --- 10, [31746]
[2025-11-27 02:05:43] 2025-11-27 01:04:45,370 | INFO     | zombie collector waiting for pid 31746
[2025-11-27 02:05:43] 2025-11-27 01:04:45,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:05:43] 2025-11-27 01:04:45,370 | INFO     | collected zombie processes
[2025-11-27 02:05:43] 2025-11-27 01:04:45,370 | INFO     | will attempt to kill all subprocesses of pid=31746
[2025-11-27 02:05:43] 2025-11-27 01:04:45,501 | INFO     | process IDs to be killed: [31746] (in reverse order)
[2025-11-27 02:05:43] 2025-11-27 01:04:46,304 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:05:43] 2025-11-27 01:04:46,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:05:43] 2025-11-27 01:04:46,311 | INFO     | did not find any defunct processes belonging to 31746
[2025-11-27 02:05:43] 2025-11-27 01:04:46,314 | INFO     | did not find any defunct processes belonging to 31746
[2025-11-27 02:05:43] 2025-11-27 01:04:46,361 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:05:43] 2025-11-27 01:04:46,361 | INFO     | ready for new job
[2025-11-27 02:05:43] 2025-11-27 01:04:46,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:05:43] 2025-11-27 01:04:46,366 | INFO     | ***************************************
[2025-11-27 02:05:43] 2025-11-27 01:04:46,366 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:05:43] 2025-11-27 01:04:46,366 | INFO     | ***************************************
[2025-11-27 02:05:43] 2025-11-27 01:04:46,366 | INFO     | 
[2025-11-27 02:05:43] 2025-11-27 01:04:46,367 | INFO     | pilot is running in a VM
[2025-11-27 02:05:43] 2025-11-27 01:04:46,367 | INFO     | architecture information:
[2025-11-27 02:05:43] 2025-11-27 01:04:46,380 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:05:43] 2025-11-27 01:04:46,671 | INFO     | cat /etc/os-release:
[2025-11-27 02:05:43] NAME="CentOS Linux"
[2025-11-27 02:05:43] VERSION="7 (Core)"
[2025-11-27 02:05:43] ID="centos"
[2025-11-27 02:05:43] ID_LIKE="rhel fedora"
[2025-11-27 02:05:43] VERSION_ID="7"
[2025-11-27 02:05:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:05:43] ANSI_COLOR="0;31"
[2025-11-27 02:05:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:05:43] HOME_URL="https://www.centos.org/"
[2025-11-27 02:05:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:05:43] 
[2025-11-27 02:05:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:05:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:05:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:05:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:05:43] 
[2025-11-27 02:05:43] 2025-11-27 01:04:46,671 | INFO     | ***************************************
[2025-11-27 02:05:43] 2025-11-27 01:04:47,174 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-27 02:05:43] 2025-11-27 01:04:47,315 | INFO     | sufficient remaining disk space (495338913792 B)
[2025-11-27 02:05:43] 2025-11-27 01:04:47,315 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:05:43] 2025-11-27 01:04:47,315 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:05:43] 2025-11-27 01:04:47,315 | INFO     | update_server=False
[2025-11-27 02:05:43] 2025-11-27 01:04:47,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:05:43] 2025-11-27 01:04:47,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:05:43] 2025-11-27 01:04:47,318 | INFO     | aborting loop
[2025-11-27 02:05:43] 2025-11-27 01:04:47,490 | INFO     | all payload control threads have been joined
[2025-11-27 02:05:43] 2025-11-27 01:04:47,580 | INFO     | all data control threads have been joined
[2025-11-27 02:05:43] 2025-11-27 01:04:47,928 | INFO     | all job control threads have been joined
[2025-11-27 02:05:43] 2025-11-27 01:04:48,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:05:43] 2025-11-27 01:04:48,321 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:48,324 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:48,496 | INFO     | [payload] control thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:48,586 | INFO     | [data] control thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:48,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:05:43] 2025-11-27 01:04:48,788 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:48,933 | INFO     | [job] control thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:48,954 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:49,072 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:49,165 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:05:43] 2025-11-27 01:04:49,305 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:49,392 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:49,458 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:49,747 | INFO     | [job] validate thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:49,748 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:49,770 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:50,039 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:04:53,174 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:05:43] 2025-11-27 01:05:15,854 | INFO     | PID=25179 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:05:43] 2025-11-27 01:05:15,854 | INFO     | .. there are 9 such processes running
[2025-11-27 02:05:43] 2025-11-27 01:05:15,855 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:05:43] 2025-11-27 01:05:15,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:05:43] 2025-11-27 01:05:15,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:05:43] 2025-11-27 01:05:34,770 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:05:43] 2025-11-27 01:05:35,957 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140046093748032)>', '<ExcThread(monitor, started 140045486892800)>']
[2025-11-27 02:05:43] 2025-11-27 01:05:35,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:05:43] 2025-11-27 01:05:35,975 | INFO     | [monitor] control thread has ended
[2025-11-27 02:05:43] 2025-11-27 01:05:40,983 | INFO     | all workflow threads have been joined
[2025-11-27 02:05:43] 2025-11-27 01:05:40,984 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:05:43] 2025-11-27 01:05:40,984 | INFO     | traces error code: 0
[2025-11-27 02:05:43] 2025-11-27 01:05:40,984 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:05:43] 2025-11-27 01:05:41,333 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:05:43] 2025-11-27 01:05:41,434 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:05:43] 2025-11-27 01:05:41,483 [wrapper] pilotpid: 25179
[2025-11-27 02:05:43] 2025-11-27 01:05:41,547 [wrapper] Pilot exit status: 0
[2025-11-27 02:05:43] 2025-11-27 01:05:41,619 [wrapper] pandaids: 6891071725
[2025-11-27 02:05:43] 2025-11-27 01:05:41,658 [wrapper] cleanup supervisor_pilot 20063 25180
[2025-11-27 02:05:43] 2025-11-27 01:05:41,670 [wrapper] Test setup, not cleaning
[2025-11-27 02:05:43] 2025-11-27 01:05:41,673 [wrapper] apfmon messages muted
[2025-11-27 02:05:43] 2025-11-27 01:05:41,675 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:05:43] 2025-11-27 01:05:41,678 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:05:43]  *** Error codes and diagnostics ***
[2025-11-27 02:05:43]     "exeErrorCode": 0,
[2025-11-27 02:05:43]     "exeErrorDiag": "",
[2025-11-27 02:05:43]     "pilotErrorCode": 0,
[2025-11-27 02:05:43]     "pilotErrorDiag": "",
[2025-11-27 02:05:43]  *** Listing of results directory ***
[2025-11-27 02:05:43] total 1325292
[2025-11-27 02:05:43] -rwx------. 1 boinc boinc     36292 Nov 19 02:21 runpilot2-wrapper.sh
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc      5112 Nov 19 02:21 queuedata.json
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc    576529 Nov 19 02:21 pilot3.tar.gz
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc       100 Nov 26 02:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:05:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 02:03 run_atlas
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc       105 Nov 26 02:03 job.xml
[2025-11-27 02:05:43] -rw-r--r--. 2 boinc boinc 409110302 Nov 26 02:03 EVNT.47483658._000163.pool.root.1
[2025-11-27 02:05:43] -rw-r--r--. 2 boinc boinc     15120 Nov 26 02:03 start_atlas.sh
[2025-11-27 02:05:43] drwxrwx--x. 2 boinc boinc        68 Nov 26 02:03 shared
[2025-11-27 02:05:43] -rw-r--r--. 2 boinc boinc    590087 Nov 26 02:03 input.tar.gz
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc      6393 Nov 26 02:03 init_data.xml
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc         0 Nov 26 02:03 boinc_lockfile
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc      2773 Nov 26 02:03 pandaJob.out
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc    991877 Nov 26 02:06 agis_schedconf.cvmfs.json
[2025-11-27 02:05:43] drwx------. 5 boinc boinc      4096 Nov 26 02:07 pilot3
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc       533 Nov 27 01:42 boinc_task_state.xml
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc 916185227 Nov 27 02:02 HITS.47483661._001630.pool.root.1
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc      1030 Nov 27 02:03 memory_monitor_summary.json
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc   1516240 Nov 27 02:03 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc   2476404 Nov 27 02:03 log.47483661._001630.job.log.tgz.1
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc      8627 Nov 27 02:04 heartbeat.json
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc        95 Nov 27 02:05 pilot_heartbeat.json
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc      8192 Nov 27 02:05 boinc_mmap_file
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc        29 Nov 27 02:05 wrapper_checkpoint.txt
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc      4884 Nov 27 02:05 pilotlog.txt
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc  11472680 Nov 27 02:05 log.47483661._001630.job.log.1
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc       353 Nov 27 02:05 output.list
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc       620 Nov 27 02:05 runtime_log
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc  13967360 Nov 27 02:05 result.tar.gz
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc      8703 Nov 27 02:05 runtime_log.err
[2025-11-27 02:05:43] -rw-------. 1 boinc boinc       662 Nov 27 02:05 QKuKDmH4lf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuXGKDmNJFMqn.diag
[2025-11-27 02:05:43] -rw-r--r--. 1 boinc boinc     21519 Nov 27 02:05 stderr.txt
[2025-11-27 02:05:44] HITS file was successfully produced:
[2025-11-27 02:05:44] -rw-------. 1 boinc boinc 916185227 Nov 27 02:02 shared/HITS.pool.root.1
[2025-11-27 02:05:44]  *** Contents of shared directory: ***
[2025-11-27 02:05:44] total 1308476
[2025-11-27 02:05:44] -rw-r--r--. 2 boinc boinc 409110302 Nov 26 02:03 ATLAS.root_0
[2025-11-27 02:05:44] -rw-r--r--. 2 boinc boinc     15120 Nov 26 02:03 start_atlas.sh
[2025-11-27 02:05:44] -rw-r--r--. 2 boinc boinc    590087 Nov 26 02:03 input.tar.gz
[2025-11-27 02:05:44] -rw-------. 1 boinc boinc 916185227 Nov 27 02:02 HITS.pool.root.1
[2025-11-27 02:05:44] -rw-------. 1 boinc boinc  13967360 Nov 27 02:05 result.tar.gz
02:05:46 (21343): run_atlas exited; CPU time 327002.900242
02:05:46 (21343): called boinc_finish(0)

</stderr_txt>
]]>

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