Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:18:52 (5415): wrapper (7.7.26015): starting
05:18:52 (5415): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 05:18:52] Arguments: --nthreads 12
[2025-11-23 05:18:52] Threads: 12
[2025-11-23 05:18:52] Checking for CVMFS
[2025-11-23 05:18:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 05:18:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 05:18:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 05:18:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 05:18:52] 2.11.2.0 723 113179 91000 153205 3 1 12416082 20275201 1 130560 0 48563691 99.912 6217401 33014 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 05:18:52] CVMFS is ok
[2025-11-23 05:18:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 05:18:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 05:18:52] Further information can be found at the LHC@home message board.
[2025-11-23 05:18:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 05:18:52] Checking for apptainer binary...
[2025-11-23 05:18:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 05:18:52] Running /usr/bin/apptainer --version
[2025-11-23 05:18:52] apptainer version 1.3.2-1.el7
[2025-11-23 05:18:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 05:18:54] c-205-1.aglt2.org
[2025-11-23 05:18:54] apptainer works
[2025-11-23 05:18:54] Set ATHENA_PROC_NUMBER=12
[2025-11-23 05:18:54] Set ATHENA_CORE_NUMBER=12
[2025-11-23 05:18:54] Starting ATLAS job with PandaID=6895339746
[2025-11-23 05:18:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 12:32:06]  *** The last 200 lines of the pilot log: ***
[2025-11-23 12:32:06] 2025-11-23 17:31:30,697 | INFO     | time since job start (25941s) is within the limit (172800.0s)
[2025-11-23 12:32:06] 2025-11-23 17:31:31,093 | INFO     | monitor loop #1944: job 0:6895339746 is in state 'finished'
[2025-11-23 12:32:06] 2025-11-23 17:31:31,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,702 | INFO     | time since job start (25943s) is within the limit (172800.0s)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,859 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 12:32:06] 2025-11-23 17:31:32,862 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-23 12:32:06] 2025-11-23 17:31:32,865 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895339746/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,866 | INFO     | extracted standard info from prmon json
[2025-11-23 12:32:06] 2025-11-23 17:31:32,866 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 12:32:06] 2025-11-23 17:31:32,866 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 12:32:06] 2025-11-23 17:31:32,873 | INFO     | fitting pss+swap vs Time
[2025-11-23 12:32:06] 2025-11-23 17:31:32,873 | INFO     | sum of square deviations: 23803345531.764675
[2025-11-23 12:32:06] 2025-11-23 17:31:32,877 | INFO     | sum of deviations: 305841157522.09424
[2025-11-23 12:32:06] 2025-11-23 17:31:32,877 | INFO     | mean x: 1763906111.2235293
[2025-11-23 12:32:06] 2025-11-23 17:31:32,878 | INFO     | mean y: 3431182.0305882352
[2025-11-23 12:32:06] 2025-11-23 17:31:32,878 | INFO     | intersect: -22660403449.82781
[2025-11-23 12:32:06] 2025-11-23 17:31:32,878 | INFO     | chi2: 6.357227291820705
[2025-11-23 12:32:06] 2025-11-23 17:31:32,879 | INFO     | sum of square deviations: 22973089171.511993
[2025-11-23 12:32:06] 2025-11-23 17:31:32,882 | INFO     | sum of deviations: 479594832011.8809
[2025-11-23 12:32:06] 2025-11-23 17:31:32,883 | INFO     | mean x: 1763905958.7261906
[2025-11-23 12:32:06] 2025-11-23 17:31:32,883 | INFO     | mean y: 3463086.1380952382
[2025-11-23 12:32:06] 2025-11-23 17:31:32,883 | INFO     | intersect: -36820499753.35171
[2025-11-23 12:32:06] 2025-11-23 17:31:32,883 | INFO     | chi2: 2.984356348754347
[2025-11-23 12:32:06] 2025-11-23 17:31:32,883 | INFO     | current chi2=2.984356348754347 (change=53.055692178977765 %)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,884 | INFO     | sum of square deviations: 22162368061.25288
[2025-11-23 12:32:06] 2025-11-23 17:31:32,888 | INFO     | sum of deviations: 517461272553.34894
[2025-11-23 12:32:06] 2025-11-23 17:31:32,888 | INFO     | mean x: 1763905806.2289157
[2025-11-23 12:32:06] 2025-11-23 17:31:32,888 | INFO     | mean y: 3470162.5542168673
[2025-11-23 12:32:06] 2025-11-23 17:31:32,888 | INFO     | intersect: -41181340983.65395
[2025-11-23 12:32:06] 2025-11-23 17:31:32,888 | INFO     | chi2: 2.6127505330066363
[2025-11-23 12:32:06] 2025-11-23 17:31:32,888 | INFO     | current chi2=2.6127505330066363 (change=12.451791016941291 %)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,889 | INFO     | right removable region: 414
[2025-11-23 12:32:06] 2025-11-23 17:31:32,889 | INFO     | sum of square deviations: 22973031221.511993
[2025-11-23 12:32:06] 2025-11-23 17:31:32,893 | INFO     | sum of deviations: 160161004291.4643
[2025-11-23 12:32:06] 2025-11-23 17:31:32,893 | INFO     | mean x: 1763906263.7261906
[2025-11-23 12:32:06] 2025-11-23 17:31:32,893 | INFO     | mean y: 3457865.2214285713
[2025-11-23 12:32:06] 2025-11-23 17:31:32,893 | INFO     | intersect: -12293961484.901127
[2025-11-23 12:32:06] 2025-11-23 17:31:32,894 | INFO     | chi2: 3.9130778027069635
[2025-11-23 12:32:06] 2025-11-23 17:31:32,894 | INFO     | current chi2=3.9130778027069635 (change=38.446784689583424 %)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,894 | INFO     | sum of square deviations: 22162277780.708454
[2025-11-23 12:32:06] 2025-11-23 17:31:32,898 | INFO     | sum of deviations: 125968388265.37584
[2025-11-23 12:32:06] 2025-11-23 17:31:32,898 | INFO     | mean x: 1763906416.226506
[2025-11-23 12:32:06] 2025-11-23 17:31:32,898 | INFO     | mean y: 3464290.0385542167
[2025-11-23 12:32:06] 2025-11-23 17:31:32,898 | INFO     | intersect: -10022420707.05425
[2025-11-23 12:32:06] 2025-11-23 17:31:32,899 | INFO     | chi2: 3.841225191130655
[2025-11-23 12:32:06] 2025-11-23 17:31:32,899 | INFO     | current chi2=3.841225191130655 (change=1.8362173000138864 %)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,899 | INFO     | left removable region: 20
[2025-11-23 12:32:06] 2025-11-23 17:31:32,899 | INFO     | sum of square deviations: 18965333382.39616
[2025-11-23 12:32:06] 2025-11-23 17:31:32,903 | INFO     | sum of deviations: 296517570269.7617
[2025-11-23 12:32:06] 2025-11-23 17:31:32,903 | INFO     | mean x: 1763906385.7258883
[2025-11-23 12:32:06] 2025-11-23 17:31:32,903 | INFO     | mean y: 3512538.395939086
[2025-11-23 12:32:06] 2025-11-23 17:31:32,903 | INFO     | intersect: -27574659968.934685
[2025-11-23 12:32:06] 2025-11-23 17:31:32,904 | INFO     | chi2: 0.024514799009149723
[2025-11-23 12:32:06] 2025-11-23 17:31:32,904 | INFO     | current memory leak: 15.63 B/s (using 394 data points, chi2=0.02)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,904 | INFO     | could have reported an average CPU frequency of 2397 MHz (18 samples)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,904 | INFO     | ..............................
[2025-11-23 12:32:06] 2025-11-23 17:31:32,904 | INFO     | . Timing measurements:
[2025-11-23 12:32:06] 2025-11-23 17:31:32,904 | INFO     | . get job = 0 s
[2025-11-23 12:32:06] 2025-11-23 17:31:32,905 | INFO     | . initial setup = 2 s
[2025-11-23 12:32:06] 2025-11-23 17:31:32,905 | INFO     | . payload setup = 7 s
[2025-11-23 12:32:06] 2025-11-23 17:31:32,905 | INFO     | . stage-in = 0 s
[2025-11-23 12:32:06] 2025-11-23 17:31:32,905 | INFO     | . payload execution = 25906 s
[2025-11-23 12:32:06] 2025-11-23 17:31:32,905 | INFO     | . stage-out = 3 s
[2025-11-23 12:32:06] 2025-11-23 17:31:32,905 | INFO     | . log creation = 0 s
[2025-11-23 12:32:06] 2025-11-23 17:31:32,905 | INFO     | ..............................
[2025-11-23 12:32:06] 2025-11-23 17:31:32,986 | INFO     | 
[2025-11-23 12:32:06] 2025-11-23 17:31:32,986 | INFO     | job summary report
[2025-11-23 12:32:06] 2025-11-23 17:31:32,986 | INFO     | --------------------------------------------------
[2025-11-23 12:32:06] 2025-11-23 17:31:32,987 | INFO     | PanDA job id: 6895339746
[2025-11-23 12:32:06] 2025-11-23 17:31:32,987 | INFO     | task id: 47556137
[2025-11-23 12:32:06] 2025-11-23 17:31:32,987 | INFO     | errors: (none)
[2025-11-23 12:32:06] 2025-11-23 17:31:32,987 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 12:32:06] 2025-11-23 17:31:32,987 | INFO     | pilot state: finished 
[2025-11-23 12:32:06] 2025-11-23 17:31:32,987 | INFO     | transexitcode: 0
[2025-11-23 12:32:06] 2025-11-23 17:31:32,988 | INFO     | exeerrorcode: 0
[2025-11-23 12:32:06] 2025-11-23 17:31:32,988 | INFO     | exeerrordiag: 
[2025-11-23 12:32:06] 2025-11-23 17:31:32,988 | INFO     | exitcode: 0
[2025-11-23 12:32:06] 2025-11-23 17:31:32,988 | INFO     | exitmsg: OK
[2025-11-23 12:32:06] 2025-11-23 17:31:32,988 | INFO     | cpuconsumptiontime: 296913 s
[2025-11-23 12:32:06] 2025-11-23 17:31:32,988 | INFO     | nevents: 1000
[2025-11-23 12:32:06] 2025-11-23 17:31:32,988 | INFO     | neventsw: 0
[2025-11-23 12:32:06] 2025-11-23 17:31:32,989 | INFO     | pid: 15660
[2025-11-23 12:32:06] 2025-11-23 17:31:32,989 | INFO     | pgrp: 15660
[2025-11-23 12:32:06] 2025-11-23 17:31:32,989 | INFO     | corecount: 12
[2025-11-23 12:32:06] 2025-11-23 17:31:32,989 | INFO     | event service: False
[2025-11-23 12:32:06] 2025-11-23 17:31:32,989 | INFO     | sizes: {0: 2298705, 5: 2298967, 11: 2299023, 25917: 2336315, 25922: 2345365, 25927: 2345555}
[2025-11-23 12:32:06] 2025-11-23 17:31:32,989 | INFO     | --------------------------------------------------
[2025-11-23 12:32:06] 2025-11-23 17:31:32,990 | INFO     | 
[2025-11-23 12:32:06] 2025-11-23 17:31:32,990 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 12:32:06] 2025-11-23 17:31:33,016 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,016 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,016 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,017 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,017 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,017 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,017 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,017 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,017 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,017 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,018 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,018 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,018 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,018 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,018 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,018 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,019 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,019 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 12:32:06] 2025-11-23 17:31:33,019 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,019 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 12:32:06] 2025-11-23 17:31:33,019 | INFO     | job 6895339746 has completed (purged errors)
[2025-11-23 12:32:06] 2025-11-23 17:31:33,020 | INFO     | overall cleanup function is called
[2025-11-23 12:32:06] 2025-11-23 17:31:34,032 | INFO     | --- collectZombieJob: --- 10, [15660]
[2025-11-23 12:32:06] 2025-11-23 17:31:34,032 | INFO     | zombie collector waiting for pid 15660
[2025-11-23 12:32:06] 2025-11-23 17:31:34,032 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 12:32:06] 2025-11-23 17:31:34,032 | INFO     | collected zombie processes
[2025-11-23 12:32:06] 2025-11-23 17:31:34,032 | INFO     | will attempt to kill all subprocesses of pid=15660
[2025-11-23 12:32:06] 2025-11-23 17:31:34,123 | INFO     | process IDs to be killed: [15660] (in reverse order)
[2025-11-23 12:32:06] 2025-11-23 17:31:34,173 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 12:32:06] 2025-11-23 17:31:34,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 12:32:06] 2025-11-23 17:31:34,177 | INFO     | did not find any defunct processes belonging to 15660
[2025-11-23 12:32:06] 2025-11-23 17:31:34,180 | INFO     | did not find any defunct processes belonging to 15660
[2025-11-23 12:32:06] 2025-11-23 17:31:34,182 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 12:32:06] 2025-11-23 17:31:34,182 | INFO     | ready for new job
[2025-11-23 12:32:06] 2025-11-23 17:31:34,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 12:32:06] 2025-11-23 17:31:34,184 | INFO     | ***************************************
[2025-11-23 12:32:06] 2025-11-23 17:31:34,184 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 12:32:06] 2025-11-23 17:31:34,184 | INFO     | ***************************************
[2025-11-23 12:32:06] 2025-11-23 17:31:34,184 | INFO     | 
[2025-11-23 12:32:06] 2025-11-23 17:31:34,185 | INFO     | architecture information:
[2025-11-23 12:32:06] 2025-11-23 17:31:34,186 | INFO     | executing command: cat /etc/os-release
[2025-11-23 12:32:06] 2025-11-23 17:31:34,202 | INFO     | cat /etc/os-release:
[2025-11-23 12:32:06] NAME="CentOS Linux"
[2025-11-23 12:32:06] VERSION="7 (Core)"
[2025-11-23 12:32:06] ID="centos"
[2025-11-23 12:32:06] ID_LIKE="rhel fedora"
[2025-11-23 12:32:06] VERSION_ID="7"
[2025-11-23 12:32:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 12:32:06] ANSI_COLOR="0;31"
[2025-11-23 12:32:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 12:32:06] HOME_URL="https://www.centos.org/"
[2025-11-23 12:32:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 12:32:06] 
[2025-11-23 12:32:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 12:32:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 12:32:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 12:32:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 12:32:06] 
[2025-11-23 12:32:06] 2025-11-23 17:31:34,202 | INFO     | ***************************************
[2025-11-23 12:32:06] 2025-11-23 17:31:34,706 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 12:32:06] 2025-11-23 17:31:34,723 | INFO     | sufficient remaining disk space (28369223680 B)
[2025-11-23 12:32:06] 2025-11-23 17:31:34,723 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 12:32:06] 2025-11-23 17:31:34,723 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 12:32:06] 2025-11-23 17:31:34,723 | INFO     | update_server=False
[2025-11-23 12:32:06] 2025-11-23 17:31:34,723 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 12:32:06] 2025-11-23 17:31:34,724 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:32:06] 2025-11-23 17:31:34,724 | INFO     | aborting loop
[2025-11-23 12:32:06] 2025-11-23 17:31:34,724 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:32:06] 2025-11-23 17:31:34,933 | INFO     | all job control threads have been joined
[2025-11-23 12:32:06] 2025-11-23 17:31:35,358 | INFO     | all data control threads have been joined
[2025-11-23 12:32:06] 2025-11-23 17:31:35,626 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 12:32:06] 2025-11-23 17:31:35,695 | INFO     | all payload control threads have been joined
[2025-11-23 12:32:06] 2025-11-23 17:31:35,729 | INFO     | [job] retrieve thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:35,730 | INFO     | [job] job monitor thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:35,730 | INFO     | [job] queue monitor thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:35,938 | INFO     | [job] control thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:35,972 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:36,145 | INFO     | [job] validate thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:36,353 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:36,364 | INFO     | [data] control thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:36,701 | INFO     | [payload] control thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:36,711 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:36,996 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:37,033 | INFO     | [payload] failed_post thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:37,134 | INFO     | [data] copytool_in thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:37,139 | INFO     | [payload] validate_post thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:37,632 | INFO     | [data] copytool_out thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:38,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 12:32:06] 2025-11-23 17:31:42,209 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 12:32:06] 2025-11-23 17:31:51,734 | INFO     | [monitor] cgroup control has ended
[2025-11-23 12:32:06] 2025-11-23 17:31:53,716 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139665092499264)>', '<ExcThread(monitor, started 139664635696896)>']
[2025-11-23 12:32:06] 2025-11-23 17:31:58,725 | INFO     | all workflow threads have been joined
[2025-11-23 12:32:06] 2025-11-23 17:31:58,725 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 12:32:06] 2025-11-23 17:31:58,725 | INFO     | traces error code: 0
[2025-11-23 12:32:06] 2025-11-23 17:31:58,725 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 12:32:06] 2025-11-23 17:32:05,884 | INFO     | PID=9160 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 12:32:06] 2025-11-23 17:32:05,884 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 12:32:06] 2025-11-23 17:32:05,884 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 12:32:06] 2025-11-23 17:32:05,884 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 12:32:06] 2025-11-23 17:32:05,884 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 12:32:06] 2025-11-23 17:32:05,884 | INFO     | [monitor] control thread has ended
[2025-11-23 12:32:06] 2025-11-23 17:32:05,981 [wrapper] ==== pilot stdout END ====
[2025-11-23 12:32:06] 2025-11-23 17:32:05,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 12:32:06] 2025-11-23 17:32:05,990 [wrapper] pilotpid: 9160
[2025-11-23 12:32:06] 2025-11-23 17:32:05,994 [wrapper] Pilot exit status: 0
[2025-11-23 12:32:06] 2025-11-23 17:32:06,009 [wrapper] pandaids: 6895339746
[2025-11-23 12:32:06] 2025-11-23 17:32:06,049 [wrapper] cleanup supervisor_pilot 18196 9161
[2025-11-23 12:32:06] 2025-11-23 17:32:06,053 [wrapper] Test setup, not cleaning
[2025-11-23 12:32:06] 2025-11-23 17:32:06,057 [wrapper] apfmon messages muted
[2025-11-23 12:32:06] 2025-11-23 17:32:06,061 [wrapper] ==== wrapper stdout END ====
[2025-11-23 12:32:06] 2025-11-23 17:32:06,064 [wrapper] ==== wrapper stderr END ====
[2025-11-23 12:32:06]  *** Error codes and diagnostics ***
[2025-11-23 12:32:06]     "exeErrorCode": 0,
[2025-11-23 12:32:06]     "exeErrorDiag": "",
[2025-11-23 12:32:06]     "pilotErrorCode": 0,
[2025-11-23 12:32:06]     "pilotErrorDiag": "",
[2025-11-23 12:32:06]  *** Listing of results directory ***
[2025-11-23 12:32:06] total 1314864
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 06:19 pilot3.tar.gz
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 06:47 queuedata.json
[2025-11-23 12:32:06] -rwx------ 1 boincer umatlas     36292 Nov 22 06:50 runpilot2-wrapper.sh
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas       100 Nov 23 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 12:32:06] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 05:18 run_atlas
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas       105 Nov 23 05:18 job.xml
[2025-11-23 12:32:06] -rw-r--r-- 2 boincer umatlas 411088439 Nov 23 05:18 EVNT.47483658._000361.pool.root.1
[2025-11-23 12:32:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 05:18 start_atlas.sh
[2025-11-23 12:32:06] drwxrwx--x 2 boincer umatlas      4096 Nov 23 05:18 shared
[2025-11-23 12:32:06] -rw-r--r-- 2 boincer umatlas    590106 Nov 23 05:18 input.tar.gz
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas         0 Nov 23 05:18 boinc_lockfile
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 05:18 pandaJob.out
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas        57 Nov 23 05:18 setup.sh.local
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas    989784 Nov 23 05:19 agis_schedconf.cvmfs.json
[2025-11-23 12:32:06] drwx------ 5 boincer umatlas      4096 Nov 23 05:19 pilot3
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas       532 Nov 23 12:22 boinc_task_state.xml
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas 919781585 Nov 23 12:30 HITS.47556137._003575.pool.root.1
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas        95 Nov 23 12:31 pilot_heartbeat.json
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas      1064 Nov 23 12:31 memory_monitor_summary.json
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas   1526164 Nov 23 12:31 agis_ddmendpoints.agis.ALL.json
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas   2177159 Nov 23 12:31 log.47556137._003575.job.log.tgz.1
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas      8662 Nov 23 12:31 heartbeat.json
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas      5955 Nov 23 12:31 init_data.xml
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 12:31 boinc_mmap_file
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas        29 Nov 23 12:31 wrapper_checkpoint.txt
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas       744 Nov 23 12:32 pilotlog.txt
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas   3635050 Nov 23 12:32 log.47556137._003575.job.log.1
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas       353 Nov 23 12:32 output.list
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas       620 Nov 23 12:32 runtime_log
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas   5836800 Nov 23 12:32 result.tar.gz
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas       669 Nov 23 12:32 ZhaLDmgJ1g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmw5HKDm4L0wim.diag
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas      9340 Nov 23 12:32 runtime_log.err
[2025-11-23 12:32:06] -rw-r--r-- 1 boincer umatlas     21306 Nov 23 12:32 stderr.txt
[2025-11-23 12:32:06] HITS file was successfully produced:
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas 919781585 Nov 23 12:30 shared/HITS.pool.root.1
[2025-11-23 12:32:06]  *** Contents of shared directory: ***
[2025-11-23 12:32:06] total 1305984
[2025-11-23 12:32:06] -rw-r--r-- 2 boincer umatlas 411088439 Nov 23 05:18 ATLAS.root_0
[2025-11-23 12:32:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 05:18 start_atlas.sh
[2025-11-23 12:32:06] -rw-r--r-- 2 boincer umatlas    590106 Nov 23 05:18 input.tar.gz
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas 919781585 Nov 23 12:30 HITS.pool.root.1
[2025-11-23 12:32:06] -rw------- 1 boincer umatlas   5836800 Nov 23 12:32 result.tar.gz
12:32:07 (5415): run_atlas exited; CPU time 290127.121276
12:32:07 (5415): called boinc_finish(0)

</stderr_txt>
]]>

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