Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 11:48:38 (533699): vboxwrapper version 26210
2025-11-24 11:48:38 (533699): BOINC client version: 7.16.6
2025-11-24 11:48:39 (533699): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-24 11:48:39 (533699): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 11:48:39 (533699): Create VM. (boinc_15c47ee72c30e675, slot#0)
2025-11-24 11:48:39 (533699): Setting Memory Size for VM. (4800MB)
2025-11-24 11:48:39 (533699): Setting CPU Count for VM. (8)
2025-11-24 11:48:40 (533699): Setting Chipset Options for VM.
2025-11-24 11:48:40 (533699): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 11:48:40 (533699): Setting Boot Options for VM.
2025-11-24 11:48:40 (533699): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 11:48:40 (533699): Enabling VM Network Access.
2025-11-24 11:48:40 (533699): Disabling USB Support for VM.
2025-11-24 11:48:41 (533699): Disabling COM Port Support for VM.
2025-11-24 11:48:41 (533699): Disabling LPT Port Support for VM.
2025-11-24 11:48:41 (533699): Disabling Audio Support for VM.
2025-11-24 11:48:41 (533699): Disabling Clipboard Support for VM.
2025-11-24 11:48:41 (533699): Disabling Drag and Drop Support for VM.
2025-11-24 11:48:41 (533699): Adding storage controller(s) to VM.
2025-11-24 11:48:42 (533699): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 11:48:42 (533699): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 11:48:42 (533699): forwarding host port 36109 to guest port 80
2025-11-24 11:48:43 (533699): Enabling remote desktop for VM.
2025-11-24 11:48:43 (533699): Enabling shared directory for VM.
2025-11-24 11:48:43 (533699): Starting VM using VBoxManage interface. (boinc_15c47ee72c30e675, slot#0)
2025-11-24 11:48:44 (533699): Successfully started VM. (PID = '534139')
2025-11-24 11:48:44 (533699): Reporting VM Process ID to BOINC.
2025-11-24 11:48:44 (533699): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-24 11:48:44 (533699): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 11:48:44 (533699): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 11:48:44 (533699): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 11:48:44 (533699): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 11:48:44 (533699): Detected: Web Application Enabled (http://localhost:36109)
2025-11-24 11:48:44 (533699): Detected: Remote Desktop Enabled (localhost:43139)
2025-11-24 11:48:44 (533699): Preference change detected
2025-11-24 11:48:44 (533699): Setting CPU throttle for VM. (90%)
2025-11-24 11:48:45 (533699): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 90 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 11:48:46 (533699): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 11:48:46 (533699): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 11:48:49 (533699): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 11:48:49 (533699): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 11:48:49 (533699): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 11:48:58 (533699): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 11:48:58 (533699): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-24 11:49:21 (533699): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 11:49:21 (533699): Guest Log: 00:00:00.000445 main     Log opened 2025-11-24T18:49:18.881500000Z
2025-11-24 11:49:21 (533699): Guest Log: 00:00:00.000642 main     OS Product: Linux
2025-11-24 11:49:21 (533699): Guest Log: 00:00:00.000712 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 11:49:21 (533699): Guest Log: 00:00:00.000770 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 11:49:21 (533699): Guest Log: 00:00:00.000828 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 11:49:21 (533699): Guest Log: 00:00:00.000830 main     Process ID: 1365
2025-11-24 11:49:21 (533699): Guest Log: 00:00:00.000831 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 11:49:21 (533699): Guest Log: 00:00:00.002954 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 11:49:21 (533699): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 11:49:21 (533699): Guest Log: [INFO] Mounting shared directory
2025-11-24 11:49:21 (533699): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 11:50:02 (533699): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 11:50:02 (533699): Guest Log: [INFO] Detected branch: prod
2025-11-24 11:50:02 (533699): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 11:50:02 (533699): Guest Log: Copying input files
2025-11-24 11:50:04 (533699): Guest Log: Copied input files into RunAtlas.
2025-11-24 11:50:05 (533699): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 11:50:05 (533699): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 11:50:05 (533699): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 11:50:05 (533699): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 11:50:21 (533699): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 11:50:27 (533699): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 11:50:27 (533699): Guest Log: 2.6.3.0 1646 0 30184 153255 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 11:50:30 (533699): Guest Log: copied the webapp to /var/www
2025-11-24 11:50:30 (533699): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-24 11:50:30 (533699): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-24 11:50:31 (533699): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 11:50:31 (533699): Guest Log:  *** Starting ATLAS job. (PandaID=6895330406 taskID=47556137) ***
2025-11-24 13:27:50 (533699): Status Report: Elapsed Time: '6000.000000'
2025-11-24 13:27:50 (533699): Status Report: CPU Time: '38324.550000'
2025-11-24 15:06:56 (533699): Status Report: Elapsed Time: '12000.000000'
2025-11-24 15:06:56 (533699): Status Report: CPU Time: '80783.660000'
2025-11-24 16:46:02 (533699): Status Report: Elapsed Time: '18000.000000'
2025-11-24 16:46:02 (533699): Status Report: CPU Time: '123247.100000'
2025-11-24 18:25:08 (533699): Status Report: Elapsed Time: '24000.000000'
2025-11-24 18:25:08 (533699): Status Report: CPU Time: '165708.150000'
2025-11-24 20:04:14 (533699): Status Report: Elapsed Time: '30000.000000'
2025-11-24 20:04:14 (533699): Status Report: CPU Time: '208173.090000'
2025-11-24 21:43:20 (533699): Status Report: Elapsed Time: '36000.000000'
2025-11-24 21:43:20 (533699): Status Report: CPU Time: '250628.400000'
2025-11-24 23:22:26 (533699): Status Report: Elapsed Time: '42000.000000'
2025-11-24 23:22:26 (533699): Status Report: CPU Time: '293089.710000'
2025-11-25 01:01:32 (533699): Status Report: Elapsed Time: '48000.000000'
2025-11-25 01:01:32 (533699): Status Report: CPU Time: '335555.010000'
2025-11-25 02:40:38 (533699): Status Report: Elapsed Time: '54000.000000'
2025-11-25 02:40:38 (533699): Status Report: CPU Time: '378024.860000'
2025-11-25 04:19:44 (533699): Status Report: Elapsed Time: '60000.000000'
2025-11-25 04:19:44 (533699): Status Report: CPU Time: '420497.130000'
2025-11-25 05:58:51 (533699): Status Report: Elapsed Time: '66000.000000'
2025-11-25 05:58:51 (533699): Status Report: CPU Time: '462964.640000'
2025-11-25 07:37:57 (533699): Status Report: Elapsed Time: '72000.000000'
2025-11-25 07:37:57 (533699): Status Report: CPU Time: '505430.740000'
2025-11-25 09:17:03 (533699): Status Report: Elapsed Time: '78000.000000'
2025-11-25 09:17:03 (533699): Status Report: CPU Time: '547899.160000'
2025-11-25 10:56:09 (533699): Status Report: Elapsed Time: '84000.000000'
2025-11-25 10:56:09 (533699): Status Report: CPU Time: '590364.690000'
2025-11-25 11:29:20 (533699): Guest Log:  *** Job finished ***
2025-11-25 11:29:20 (533699): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:28:26,010 | INFO     | [data] copytool_out thread has finished
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:28:27,163 | INFO     | [data] queue_monitor thread has finished
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:08,205 | INFO     | [monitor] cgroup control has ended
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:10,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140097342936896)>', '<ExcThread(monitor, started 140096321873664)>']
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:10,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:10,450 | INFO     | [monitor] control thread has ended
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,399 | INFO     | all workflow threads have been joined
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,400 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,400 | INFO     | traces error code: 0
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,694 [wrapper] ==== pilot stdout END ====
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,707 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,720 [wrapper] pilotpid: 6087
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,732 [wrapper] Pilot exit status: 0
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,801 [wrapper] pandaids: 6895330406
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,885 [wrapper] cleanup supervisor_pilot 22536 6088
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,907 [wrapper] Test setup, not cleaning
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,919 [wrapper] apfmon messages muted
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,932 [wrapper] ==== wrapper stdout END ====
2025-11-25 11:29:20 (533699): Guest Log: 2025-11-25 18:29:15,944 [wrapper] ==== wrapper stderr END ====
2025-11-25 11:29:20 (533699): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 11:29:20 (533699): Guest Log:     "exeErrorCode": 0,
2025-11-25 11:29:20 (533699): Guest Log:     "exeErrorDiag": "",
2025-11-25 11:29:20 (533699): Guest Log:     "pilotErrorCode": 0,
2025-11-25 11:29:20 (533699): Guest Log:     "pilotErrorDiag": "",
2025-11-25 11:29:20 (533699): Guest Log:  *** Listing of results directory ***
2025-11-25 11:29:20 (533699): Guest Log: total 935440
2025-11-25 11:29:20 (533699): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 20:30 pilot3.tar.gz
2025-11-25 11:29:20 (533699): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 20:52 runpilot2-wrapper.sh
2025-11-25 11:29:20 (533699): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 20:52 queuedata.json
2025-11-25 11:29:20 (533699): Guest Log: -rw-r--r--. 1 atlas atlas      6204 Nov 24 18:50 init_data.xml
2025-11-25 11:29:20 (533699): Guest Log: -rw-r--r--. 1 atlas atlas    590096 Nov 24 18:50 input.tar.gz
2025-11-25 11:29:20 (533699): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 24 18:50 start_atlas.sh
2025-11-25 11:29:20 (533699): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 18:50 EVNT.47483658._000136.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 11:29:20 (533699): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 24 18:50 pandaJob.out
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas    991801 Nov 24 18:51 agis_schedconf.cvmfs.json
2025-11-25 11:29:20 (533699): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 18:51 pilot3
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas 927887050 Nov 25 18:27 HITS.47556137._001357.pool.root.1
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas      1044 Nov 25 18:27 memory_monitor_summary.json
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 18:28 agis_ddmendpoints.agis.ALL.json
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas   2450266 Nov 25 18:28 log.47556137._001357.job.log.tgz.1
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas        95 Nov 25 18:28 pilot_heartbeat.json
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas      8656 Nov 25 18:28 heartbeat.json
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 25 18:29 pilotlog.txt
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas  10629169 Nov 25 18:29 log.47556137._001357.job.log.1
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 18:29 output.list
2025-11-25 11:29:20 (533699): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 18:29 runtime_log
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas  13096960 Nov 25 18:29 result.tar.gz
2025-11-25 11:29:20 (533699): Guest Log: -rw-r--r--. 1 atlas atlas      8765 Nov 25 18:29 runtime_log.err
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas       670 Nov 25 18:29 AljNDmfIng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWoHKDmjwwx7n.diag
2025-11-25 11:29:20 (533699): Guest Log: Looking for outputfile HITS.47556137._001357.pool.root.1
2025-11-25 11:29:20 (533699): Guest Log: HITS file was successfully produced
2025-11-25 11:29:20 (533699): Guest Log: -rw-------. 1 atlas atlas 927887050 Nov 25 18:27 /home/atlas/RunAtlas/HITS.47556137._001357.pool.root.1
2025-11-25 11:29:21 (533699): Guest Log: Successfully finished the ATLAS job!
2025-11-25 11:29:21 (533699): Guest Log: Copying the results back to the shared directory!
2025-11-25 11:29:21 (533699): Guest Log:  *** Contents of shared directory: ***
2025-11-25 11:29:21 (533699): Guest Log: total 415064
2025-11-25 11:29:21 (533699): Guest Log: -rw-r--r--. 1 root root 411303277 Nov 24 18:48 ATLAS.root_0
2025-11-25 11:29:21 (533699): Guest Log: -rw-r--r--. 1 root root      6204 Nov 24 18:48 init_data.xml
2025-11-25 11:29:21 (533699): Guest Log: -rw-r--r--. 1 root root    590096 Nov 24 18:48 input.tar.gz
2025-11-25 11:29:21 (533699): Guest Log: -rw-r--r--. 1 root root  13096960 Nov 25 18:29 result.tar.gz
2025-11-25 11:29:21 (533699): Guest Log: -rw-r--r--. 1 root root     15847 Nov 24 18:48 start_atlas.sh
2025-11-25 11:29:21 (533699): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 11:29:21 (533699): VM Completion File Detected.
2025-11-25 11:29:21 (533699): Powering off VM.
2025-11-25 11:29:22 (533699): Successfully stopped VM.
2025-11-25 11:29:22 (533699): Deregistering VM. (boinc_15c47ee72c30e675, slot#0)
2025-11-25 11:29:22 (533699): Removing network bandwidth throttle group from VM.
2025-11-25 11:29:22 (533699): Removing VM from VirtualBox.
2025-11-25 11:29:27 (533699): called boinc_finish(0)

</stderr_txt>
]]>

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