Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:47:54 (2437017): wrapper (7.7.26015): starting
23:47:54 (2437017): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 23:47:54] Arguments: --nthreads 4
[2025-11-23 23:47:54] Threads: 4
[2025-11-23 23:47:54] Checking for CVMFS
[2025-11-23 23:47:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:47:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:47:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:47:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:47:54] 2.12.7.0 1658315 4870 84716 153223 1 81 3864263 4097025 0 130560 0 1803877 99.978 154628 14658 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-23 23:47:54] CVMFS is ok
[2025-11-23 23:47:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 23:47:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 23:47:54] Further information can be found at the LHC@home message board.
[2025-11-23 23:47:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:47:54] Checking for apptainer binary...
[2025-11-23 23:47:54] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-23 23:47:54] apptainer is not installed, using version from CVMFS
[2025-11-23 23:47:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:47:55] pckeatlas05
[2025-11-23 23:47:55] apptainer works
[2025-11-23 23:47:55] Set ATHENA_PROC_NUMBER=4
[2025-11-23 23:47:55] Set ATHENA_CORE_NUMBER=4
[2025-11-23 23:47:55] Starting ATLAS job with PandaID=6895339732
[2025-11-23 23:47:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:05:25]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:05:25] 2025-11-24 12:04:46,569 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-24 13:05:25] 2025-11-24 12:04:47,427 | INFO     | time since job start (47808s) is within the limit (172800.0s)
[2025-11-24 13:05:25] 2025-11-24 12:04:47,708 | INFO     | monitor loop #3613: job 0:6895339732 is in state 'finished'
[2025-11-24 13:05:25] 2025-11-24 12:04:47,709 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:05:25] 2025-11-24 12:04:48,985 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 13:05:25] 2025-11-24 12:04:48,985 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3802.37
[2025-11-24 13:05:25] 2025-11-24 12:04:48,986 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6895339732/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:05:25] 2025-11-24 12:04:48,986 | INFO     | extracted standard info from prmon json
[2025-11-24 13:05:25] 2025-11-24 12:04:48,986 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:05:25] 2025-11-24 12:04:48,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:05:25] 2025-11-24 12:04:48,993 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:05:25] 2025-11-24 12:04:48,994 | INFO     | sum of square deviations: 149425908660.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,001 | INFO     | sum of deviations: 586408456759.4999
[2025-11-24 13:05:25] 2025-11-24 12:04:49,001 | INFO     | mean x: 1763961980.5
[2025-11-24 13:05:25] 2025-11-24 12:04:49,002 | INFO     | mean y: 2391110.8431122447
[2025-11-24 13:05:25] 2025-11-24 12:04:49,002 | INFO     | intersect: -6920118058.039301
[2025-11-24 13:05:25] 2025-11-24 12:04:49,002 | INFO     | chi2: 2.2213739247448774
[2025-11-24 13:05:25] 2025-11-24 12:04:49,003 | INFO     | sum of square deviations: 146585185630.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,010 | INFO     | sum of deviations: 675243626894.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,010 | INFO     | mean x: 1763961828.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,010 | INFO     | mean y: 2395866.128369705
[2025-11-24 13:05:25] 2025-11-24 12:04:49,010 | INFO     | intersect: -8123281891.293796
[2025-11-24 13:05:25] 2025-11-24 12:04:49,010 | INFO     | chi2: 1.3408162258248721
[2025-11-24 13:05:25] 2025-11-24 12:04:49,010 | INFO     | current chi2=1.3408162258248721 (change=39.640228469015476 %)
[2025-11-24 13:05:25] 2025-11-24 12:04:49,011 | INFO     | sum of square deviations: 143780695837.5
[2025-11-24 13:05:25] 2025-11-24 12:04:49,018 | INFO     | sum of deviations: 666610888228.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,018 | INFO     | mean x: 1763961675.5
[2025-11-24 13:05:25] 2025-11-24 12:04:49,018 | INFO     | mean y: 2395396.702842377
[2025-11-24 13:05:25] 2025-11-24 12:04:49,018 | INFO     | intersect: -8175865617.099549
[2025-11-24 13:05:25] 2025-11-24 12:04:49,019 | INFO     | chi2: 1.3400416068856271
[2025-11-24 13:05:25] 2025-11-24 12:04:49,019 | INFO     | current chi2=1.3400416068856271 (change=0.057772193110839865 %)
[2025-11-24 13:05:25] 2025-11-24 12:04:49,019 | INFO     | right removable region: 773
[2025-11-24 13:05:25] 2025-11-24 12:04:49,019 | INFO     | sum of square deviations: 146585185630.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,026 | INFO     | sum of deviations: 490549916144.00006
[2025-11-24 13:05:25] 2025-11-24 12:04:49,026 | INFO     | mean x: 1763962133.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,027 | INFO     | mean y: 2396239.826700899
[2025-11-24 13:05:25] 2025-11-24 12:04:49,027 | INFO     | intersect: -5900734234.820988
[2025-11-24 13:05:25] 2025-11-24 12:04:49,027 | INFO     | chi2: 1.0595691093503106
[2025-11-24 13:05:25] 2025-11-24 12:04:49,027 | INFO     | current chi2=1.0595691093503106 (change=52.301181825027456 %)
[2025-11-24 13:05:25] 2025-11-24 12:04:49,028 | INFO     | sum of square deviations: 143780695837.5
[2025-11-24 13:05:25] 2025-11-24 12:04:49,035 | INFO     | sum of deviations: 478039115135.50006
[2025-11-24 13:05:25] 2025-11-24 12:04:49,035 | INFO     | mean x: 1763962285.5
[2025-11-24 13:05:25] 2025-11-24 12:04:49,035 | INFO     | mean y: 2396919.7299741604
[2025-11-24 13:05:25] 2025-11-24 12:04:49,035 | INFO     | intersect: -5862388788.678629
[2025-11-24 13:05:25] 2025-11-24 12:04:49,035 | INFO     | chi2: 1.0588957124583818
[2025-11-24 13:05:25] 2025-11-24 12:04:49,035 | INFO     | current chi2=1.0588957124583818 (change=0.06355384334880279 %)
[2025-11-24 13:05:25] 2025-11-24 12:04:49,035 | INFO     | left removable region: 20
[2025-11-24 13:05:25] 2025-11-24 12:04:49,036 | INFO     | sum of square deviations: 132392257192.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,043 | INFO     | sum of deviations: 544883314777.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,043 | INFO     | mean x: 1763962255.0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,043 | INFO     | mean y: 2401941.9229747676
[2025-11-24 13:05:25] 2025-11-24 12:04:49,043 | INFO     | intersect: -7257490902.505323
[2025-11-24 13:05:25] 2025-11-24 12:04:49,043 | INFO     | chi2: 0.17107518924235482
[2025-11-24 13:05:25] 2025-11-24 12:04:49,043 | INFO     | current memory leak: 4.12 B/s (using 753 data points, chi2=0.17)
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | could have reported an average CPU frequency of 3708 MHz (30 samples)
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | ..............................
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | . Timing measurements:
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | . get job = 0 s
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | . initial setup = 0 s
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | . payload setup = 3 s
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | . stage-in = 0 s
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | . payload execution = 47785 s
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | . stage-out = 1 s
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | . log creation = 0 s
[2025-11-24 13:05:25] 2025-11-24 12:04:49,044 | INFO     | ..............................
[2025-11-24 13:05:25] 2025-11-24 12:04:49,092 | INFO     | 
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | job summary report
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | --------------------------------------------------
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | PanDA job id: 6895339732
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | task id: 47556137
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | errors: (none)
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | pilot state: finished 
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | transexitcode: 0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | exeerrorcode: 0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | exeerrordiag: 
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | exitcode: 0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | exitmsg: OK
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | cpuconsumptiontime: 188600 s
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | nevents: 1000
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | neventsw: 0
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | pid: 2447865
[2025-11-24 13:05:25] 2025-11-24 12:04:49,093 | INFO     | pgrp: 2447865
[2025-11-24 13:05:25] 2025-11-24 12:04:49,094 | INFO     | corecount: 4
[2025-11-24 13:05:25] 2025-11-24 12:04:49,094 | INFO     | event service: False
[2025-11-24 13:05:25] 2025-11-24 12:04:49,094 | INFO     | sizes: {0: 2298699, 2: 2298961, 11: 2298989, 47793: 2347079, 47794: 2356920, 47797: 2357110}
[2025-11-24 13:05:25] 2025-11-24 12:04:49,094 | INFO     | --------------------------------------------------
[2025-11-24 13:05:25] 2025-11-24 12:04:49,094 | INFO     | 
[2025-11-24 13:05:25] 2025-11-24 12:04:49,094 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,103 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | job 6895339732 has completed (purged errors)
[2025-11-24 13:05:25] 2025-11-24 12:04:49,104 | INFO     | overall cleanup function is called
[2025-11-24 13:05:25] 2025-11-24 12:04:50,113 | INFO     | --- collectZombieJob: --- 10, [2447865]
[2025-11-24 13:05:25] 2025-11-24 12:04:50,113 | INFO     | zombie collector waiting for pid 2447865
[2025-11-24 13:05:25] 2025-11-24 12:04:50,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:05:25] 2025-11-24 12:04:50,113 | INFO     | collected zombie processes
[2025-11-24 13:05:25] 2025-11-24 12:04:50,113 | INFO     | will attempt to kill all subprocesses of pid=2447865
[2025-11-24 13:05:25] 2025-11-24 12:04:50,156 | INFO     | process IDs to be killed: [2447865] (in reverse order)
[2025-11-24 13:05:25] 2025-11-24 12:04:50,175 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:05:25] 2025-11-24 12:04:50,175 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:05:25] 2025-11-24 12:04:50,176 | INFO     | did not find any defunct processes belonging to 2447865
[2025-11-24 13:05:25] 2025-11-24 12:04:50,177 | INFO     | did not find any defunct processes belonging to 2447865
[2025-11-24 13:05:25] 2025-11-24 12:04:50,178 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:05:25] 2025-11-24 12:04:50,178 | INFO     | ready for new job
[2025-11-24 13:05:25] 2025-11-24 12:04:50,178 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:05:25] 2025-11-24 12:04:50,179 | INFO     | ***************************************
[2025-11-24 13:05:25] 2025-11-24 12:04:50,179 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:05:25] 2025-11-24 12:04:50,179 | INFO     | ***************************************
[2025-11-24 13:05:25] 2025-11-24 12:04:50,180 | INFO     | 
[2025-11-24 13:05:25] 2025-11-24 12:04:50,180 | INFO     | architecture information:
[2025-11-24 13:05:25] 2025-11-24 12:04:50,180 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:05:25] 2025-11-24 12:04:50,186 | INFO     | cat /etc/os-release:
[2025-11-24 13:05:25] NAME="CentOS Linux"
[2025-11-24 13:05:25] VERSION="7 (Core)"
[2025-11-24 13:05:25] ID="centos"
[2025-11-24 13:05:25] ID_LIKE="rhel fedora"
[2025-11-24 13:05:25] VERSION_ID="7"
[2025-11-24 13:05:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:05:25] ANSI_COLOR="0;31"
[2025-11-24 13:05:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:05:25] HOME_URL="https://www.centos.org/"
[2025-11-24 13:05:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:05:25] 
[2025-11-24 13:05:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:05:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:05:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:05:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:05:25] 
[2025-11-24 13:05:25] 2025-11-24 12:04:50,186 | INFO     | ***************************************
[2025-11-24 13:05:25] 2025-11-24 12:04:50,689 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-24 13:05:25] 2025-11-24 12:04:50,696 | INFO     | sufficient remaining disk space (45901414400 B)
[2025-11-24 13:05:25] 2025-11-24 12:04:50,696 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:05:25] 2025-11-24 12:04:50,697 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:05:25] 2025-11-24 12:04:50,697 | INFO     | update_server=False
[2025-11-24 13:05:25] 2025-11-24 12:04:50,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:05:25] 2025-11-24 12:04:50,697 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:05:25] 2025-11-24 12:04:51,071 | INFO     | all job control threads have been joined
[2025-11-24 13:05:25] 2025-11-24 12:04:51,217 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:05:25] 2025-11-24 12:04:51,217 | INFO     | aborting loop
[2025-11-24 13:05:25] 2025-11-24 12:04:51,451 | INFO     | all data control threads have been joined
[2025-11-24 13:05:25] 2025-11-24 12:04:51,698 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:51,702 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:51,713 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:05:25] 2025-11-24 12:04:51,746 | INFO     | all payload control threads have been joined
[2025-11-24 13:05:25] 2025-11-24 12:04:51,896 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,076 | INFO     | [job] control thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,076 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,222 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:05:25] 2025-11-24 12:04:52,456 | INFO     | [data] control thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,460 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,531 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,568 | INFO     | [job] validate thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,600 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,652 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,694 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:52,751 | INFO     | [payload] control thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:53,718 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:04:56,263 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:05:25] 2025-11-24 12:05:18,363 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:05:25] 2025-11-24 12:05:20,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139878077011776)>', '<ExcThread(monitor, started 139877513406208)>']
[2025-11-24 13:05:25] 2025-11-24 12:05:20,543 | INFO     | PID=2440686 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 13:05:25] 2025-11-24 12:05:20,544 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:05:25] 2025-11-24 12:05:20,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:05:25] 2025-11-24 12:05:20,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:05:25] 2025-11-24 12:05:20,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:05:25] 2025-11-24 12:05:20,544 | INFO     | [monitor] control thread has ended
[2025-11-24 13:05:25] 2025-11-24 12:05:25,336 | INFO     | all workflow threads have been joined
[2025-11-24 13:05:25] 2025-11-24 12:05:25,336 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:05:25] 2025-11-24 12:05:25,336 | INFO     | traces error code: 0
[2025-11-24 13:05:25] 2025-11-24 12:05:25,336 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:05:25] 2025-11-24 12:05:25,393 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:05:25] 2025-11-24 12:05:25,394 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:05:25] 2025-11-24 12:05:25,395 [wrapper] pilotpid: 2440686
[2025-11-24 13:05:25] 2025-11-24 12:05:25,396 [wrapper] Pilot exit status: 0
[2025-11-24 13:05:25] 2025-11-24 12:05:25,401 [wrapper] pandaids: 6895339732
[2025-11-24 13:05:25] 2025-11-24 12:05:25,412 [wrapper] cleanup supervisor_pilot 2563568 2440687
[2025-11-24 13:05:25] 2025-11-24 12:05:25,413 [wrapper] Test setup, not cleaning
[2025-11-24 13:05:25] 2025-11-24 12:05:25,414 [wrapper] apfmon messages muted
[2025-11-24 13:05:25] 2025-11-24 12:05:25,415 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:05:25] 2025-11-24 12:05:25,416 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:05:25]  *** Error codes and diagnostics ***
[2025-11-24 13:05:25]     "exeErrorCode": 0,
[2025-11-24 13:05:25]     "exeErrorDiag": "",
[2025-11-24 13:05:25]     "pilotErrorCode": 0,
[2025-11-24 13:05:25]     "pilotErrorDiag": "",
[2025-11-24 13:05:25]  *** Listing of results directory ***
[2025-11-24 13:05:25] total 1318088
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc    576529 Nov 22 12:19 pilot3.tar.gz
[2025-11-24 13:05:25] -rwx------ 1 boinc boinc     36292 Nov 22 12:29 runpilot2-wrapper.sh
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc      5112 Nov 22 12:29 queuedata.json
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc       100 Nov 23 23:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:05:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 23:47 run_atlas
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc       105 Nov 23 23:47 job.xml
[2025-11-24 13:05:25] -rw-r--r-- 2 boinc boinc 409594164 Nov 23 23:47 EVNT.47483658._000360.pool.root.1
[2025-11-24 13:05:25] -rw-r--r-- 2 boinc boinc     15847 Nov 23 23:47 start_atlas.sh
[2025-11-24 13:05:25] drwxrwx--x 2 boinc boinc        68 Nov 23 23:47 shared
[2025-11-24 13:05:25] -rw-r--r-- 2 boinc boinc    590098 Nov 23 23:47 input.tar.gz
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc      6313 Nov 23 23:47 init_data.xml
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc         0 Nov 23 23:47 boinc_lockfile
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc      2781 Nov 23 23:47 pandaJob.out
[2025-11-24 13:05:25] -rw------- 1 boinc boinc    989786 Nov 23 23:47 agis_schedconf.cvmfs.json
[2025-11-24 13:05:25] drwx------ 5 boinc boinc      4096 Nov 23 23:47 pilot3
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc       533 Nov 24 13:00 boinc_task_state.xml
[2025-11-24 13:05:25] -rw------- 1 boinc boinc 919811559 Nov 24 13:04 HITS.47556137._003561.pool.root.1
[2025-11-24 13:05:25] -rw------- 1 boinc boinc        95 Nov 24 13:04 pilot_heartbeat.json
[2025-11-24 13:05:25] -rw------- 1 boinc boinc      1026 Nov 24 13:04 memory_monitor_summary.json
[2025-11-24 13:05:25] -rw------- 1 boinc boinc   1516227 Nov 24 13:04 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:05:25] -rw------- 1 boinc boinc   1518961 Nov 24 13:04 log.47556137._003561.job.log.tgz.1
[2025-11-24 13:05:25] -rw------- 1 boinc boinc      8574 Nov 24 13:04 heartbeat.json
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc      8192 Nov 24 13:05 boinc_mmap_file
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc        29 Nov 24 13:05 wrapper_checkpoint.txt
[2025-11-24 13:05:25] -rw------- 1 boinc boinc      4748 Nov 24 13:05 pilotlog.txt
[2025-11-24 13:05:25] -rw------- 1 boinc boinc   6689084 Nov 24 13:05 log.47556137._003561.job.log.1
[2025-11-24 13:05:25] -rw------- 1 boinc boinc       353 Nov 24 13:05 output.list
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc       620 Nov 24 13:05 runtime_log
[2025-11-24 13:05:25] -rw------- 1 boinc boinc   8222720 Nov 24 13:05 result.tar.gz
[2025-11-24 13:05:25] -rw------- 1 boinc boinc       658 Nov 24 13:05 SoPNDmYz0g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDml8JKDmdMnZWn.diag
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc      8831 Nov 24 13:05 runtime_log.err
[2025-11-24 13:05:25] -rw-r--r-- 1 boinc boinc     21450 Nov 24 13:05 stderr.txt
[2025-11-24 13:05:25] HITS file was successfully produced:
[2025-11-24 13:05:25] -rw------- 1 boinc boinc 919811559 Nov 24 13:04 shared/HITS.pool.root.1
[2025-11-24 13:05:25]  *** Contents of shared directory: ***
[2025-11-24 13:05:25] total 1306880
[2025-11-24 13:05:25] -rw-r--r-- 2 boinc boinc 409594164 Nov 23 23:47 ATLAS.root_0
[2025-11-24 13:05:25] -rw-r--r-- 2 boinc boinc     15847 Nov 23 23:47 start_atlas.sh
[2025-11-24 13:05:25] -rw-r--r-- 2 boinc boinc    590098 Nov 23 23:47 input.tar.gz
[2025-11-24 13:05:25] -rw------- 1 boinc boinc 919811559 Nov 24 13:04 HITS.pool.root.1
[2025-11-24 13:05:25] -rw------- 1 boinc boinc   8222720 Nov 24 13:05 result.tar.gz
13:05:26 (2437017): run_atlas exited; CPU time 188774.955014
13:05:26 (2437017): called boinc_finish(0)

</stderr_txt>
]]>

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