Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:24:01 (5953): wrapper (7.7.26015): starting
05:24:01 (5953): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 05:24:01] Arguments: --nthreads 8
[2025-11-26 05:24:01] Threads: 8
[2025-11-26 05:24:01] Checking for CVMFS
[2025-11-26 05:24:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 05:24:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 05:24:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 05:24:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 05:24:04] 2.11.2.0 32577 284905 145812 153309 0 117 20192346 25165825 3208 130560 11 125020352 99.849 84418664 3027 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 05:24:04] CVMFS is ok
[2025-11-26 05:24:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 05:24:04] Checking for apptainer binary...
[2025-11-26 05:24:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 05:24:04] Running /usr/bin/apptainer --version
[2025-11-26 05:24:04] apptainer version 1.3.2-1.el7
[2025-11-26 05:24:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 05:24:31] cg-vwn389.simple-grid.lan
[2025-11-26 05:24:31] apptainer works
[2025-11-26 05:24:31] Set ATHENA_PROC_NUMBER=8
[2025-11-26 05:24:31] Set ATHENA_CORE_NUMBER=8
[2025-11-26 05:24:31] Starting ATLAS job with PandaID=6895339546
[2025-11-26 05:24:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:16:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:16:42] 2025-11-27 04:15:22,216 | INFO     | monitor loop #5791: job 0:6895339546 is in state 'finished'
[2025-11-27 05:16:42] 2025-11-27 04:15:22,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:16:42] 2025-11-27 04:15:23,951 | INFO     | time since job start (85639s) is within the limit (172800.0s)
[2025-11-27 05:16:42] 2025-11-27 04:15:24,726 | INFO     | monitor loop #5792: job 0:6895339546 is in state 'finished'
[2025-11-27 05:16:42] 2025-11-27 04:15:24,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:16:42] 2025-11-27 04:15:25,963 | INFO     | time since job start (85641s) is within the limit (172800.0s)
[2025-11-27 05:16:42] 2025-11-27 04:15:27,232 | INFO     | monitor loop #5793: job 0:6895339546 is in state 'finished'
[2025-11-27 05:16:42] 2025-11-27 04:15:27,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:16:42] 2025-11-27 04:15:27,970 | INFO     | time since job start (85643s) is within the limit (172800.0s)
[2025-11-27 05:16:42] 2025-11-27 04:15:29,180 | INFO     | PID=9792 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 05:16:42] 2025-11-27 04:15:29,180 | INFO     | .. there are 9 such processes running
[2025-11-27 05:16:42] 2025-11-27 04:15:29,737 | INFO     | monitor loop #5794: job 0:6895339546 is in state 'finished'
[2025-11-27 05:16:42] 2025-11-27 04:15:29,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:16:42] 2025-11-27 04:15:30,181 | INFO     | time since job start (85646s) is within the limit (172800.0s)
[2025-11-27 05:16:42] 2025-11-27 04:15:30,181 | INFO     | 85653s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 05:16:42] 2025-11-27 04:15:31,263 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:16:42] 2025-11-27 04:15:31,266 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 05:16:42] 2025-11-27 04:15:31,268 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6895339546/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:16:42] 2025-11-27 04:15:31,269 | INFO     | extracted standard info from prmon json
[2025-11-27 05:16:42] 2025-11-27 04:15:31,269 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:16:42] 2025-11-27 04:15:31,269 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:16:42] 2025-11-27 04:15:31,301 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:16:42] 2025-11-27 04:15:31,303 | INFO     | sum of square deviations: 841782070360.0742
[2025-11-27 05:16:42] 2025-11-27 04:15:31,377 | INFO     | sum of deviations: 2637486741590.587
[2025-11-27 05:16:42] 2025-11-27 04:15:31,378 | INFO     | mean x: 1764174279.1691756
[2025-11-27 05:16:42] 2025-11-27 04:15:31,378 | INFO     | mean y: 2838489.641577061
[2025-11-27 05:16:42] 2025-11-27 04:15:31,378 | INFO     | intersect: -5524704130.94846
[2025-11-27 05:16:42] 2025-11-27 04:15:31,380 | INFO     | chi2: 21.308367680835353
[2025-11-27 05:16:42] 2025-11-27 04:15:31,382 | INFO     | sum of square deviations: 832763524285.7148
[2025-11-27 05:16:42] 2025-11-27 04:15:31,435 | INFO     | sum of deviations: 3096022357990.681
[2025-11-27 05:16:42] 2025-11-27 04:15:31,435 | INFO     | mean x: 1764174126.6733813
[2025-11-27 05:16:42] 2025-11-27 04:15:31,435 | INFO     | mean y: 2846242.21294964
[2025-11-27 05:16:42] 2025-11-27 04:15:31,435 | INFO     | intersect: -6555945515.932702
[2025-11-27 05:16:42] 2025-11-27 04:15:31,437 | INFO     | chi2: 18.085759524255252
[2025-11-27 05:16:42] 2025-11-27 04:15:31,437 | INFO     | current chi2=18.085759524255252 (change=15.123674440245837 %)
[2025-11-27 05:16:42] 2025-11-27 04:15:31,437 | INFO     | right removable region: 1389
[2025-11-27 05:16:42] 2025-11-27 04:15:31,439 | INFO     | sum of square deviations: 832762529375.7145
[2025-11-27 05:16:42] 2025-11-27 04:15:31,502 | INFO     | sum of deviations: 2093390920510.8518
[2025-11-27 05:16:42] 2025-11-27 04:15:31,503 | INFO     | mean x: 1764174431.6733813
[2025-11-27 05:16:42] 2025-11-27 04:15:31,503 | INFO     | mean y: 2847687.3366906475
[2025-11-27 05:16:42] 2025-11-27 04:15:31,503 | INFO     | intersect: -4431918055.823017
[2025-11-27 05:16:42] 2025-11-27 04:15:31,505 | INFO     | chi2: 17.277382262258097
[2025-11-27 05:16:42] 2025-11-27 04:15:31,505 | INFO     | current chi2=17.277382262258097 (change=18.91738249947088 %)
[2025-11-27 05:16:42] 2025-11-27 04:15:31,505 | INFO     | left removable region: 10
[2025-11-27 05:16:42] 2025-11-27 04:15:31,507 | INFO     | sum of square deviations: 813147982013.9514
[2025-11-27 05:16:42] 2025-11-27 04:15:31,571 | INFO     | sum of deviations: 2195831754627.1895
[2025-11-27 05:16:42] 2025-11-27 04:15:31,571 | INFO     | mean x: 1764174401.1827412
[2025-11-27 05:16:42] 2025-11-27 04:15:31,571 | INFO     | mean y: 2865043.6381435823
[2025-11-27 05:16:42] 2025-11-27 04:15:31,571 | INFO     | intersect: -4761126574.742341
[2025-11-27 05:16:42] 2025-11-27 04:15:31,573 | INFO     | chi2: 10.520501875948877
[2025-11-27 05:16:42] 2025-11-27 04:15:31,573 | INFO     | current memory leak: 2.70 B/s (using 1379 data points, chi2=10.52)
[2025-11-27 05:16:42] 2025-11-27 04:15:31,578 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 05:16:42] 2025-11-27 04:15:31,578 | INFO     | ..............................
[2025-11-27 05:16:42] 2025-11-27 04:15:31,578 | INFO     | . Timing measurements:
[2025-11-27 05:16:42] 2025-11-27 04:15:31,579 | INFO     | . get job = 0 s
[2025-11-27 05:16:42] 2025-11-27 04:15:31,579 | INFO     | . initial setup = 7 s
[2025-11-27 05:16:42] 2025-11-27 04:15:31,579 | INFO     | . payload setup = 129 s
[2025-11-27 05:16:42] 2025-11-27 04:15:31,582 | INFO     | . stage-in = 0 s
[2025-11-27 05:16:42] 2025-11-27 04:15:31,582 | INFO     | . payload execution = 85214 s
[2025-11-27 05:16:42] 2025-11-27 04:15:31,582 | INFO     | . stage-out = 6 s
[2025-11-27 05:16:42] 2025-11-27 04:15:31,582 | INFO     | . log creation = 1 s
[2025-11-27 05:16:42] 2025-11-27 04:15:31,582 | INFO     | ..............................
[2025-11-27 05:16:42] 2025-11-27 04:15:31,754 | INFO     | 
[2025-11-27 05:16:42] 2025-11-27 04:15:31,754 | INFO     | job summary report
[2025-11-27 05:16:42] 2025-11-27 04:15:31,754 | INFO     | --------------------------------------------------
[2025-11-27 05:16:42] 2025-11-27 04:15:31,754 | INFO     | PanDA job id: 6895339546
[2025-11-27 05:16:42] 2025-11-27 04:15:31,754 | INFO     | task id: 47556149
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | errors: (none)
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | pilot state: finished 
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | transexitcode: 0
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | exeerrorcode: 0
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | exeerrordiag: 
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | exitcode: 0
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | exitmsg: OK
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | cpuconsumptiontime: 312025 s
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | nevents: 1000
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | neventsw: 0
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | pid: 16360
[2025-11-27 05:16:42] 2025-11-27 04:15:31,755 | INFO     | pgrp: 16360
[2025-11-27 05:16:42] 2025-11-27 04:15:31,756 | INFO     | corecount: 8
[2025-11-27 05:16:42] 2025-11-27 04:15:31,756 | INFO     | event service: False
[2025-11-27 05:16:42] 2025-11-27 04:15:31,756 | INFO     | sizes: {0: 2284086, 1: 2284341, 2: 2284341, 12: 2284369, 23: 2284397, 34: 2284425, 45: 2284581, 55: 2284609, 66: 2284637, 77: 2284665, 88: 2284721, 95: 2285291, 98
[2025-11-27 05:16:42] 2025-11-27 04:15:31,756 | INFO     | --------------------------------------------------
[2025-11-27 05:16:42] 2025-11-27 04:15:31,756 | INFO     | 
[2025-11-27 05:16:42] 2025-11-27 04:15:31,756 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-11-27 05:16:42] 2025-11-27 04:15:32,190 | INFO     | time since job start (85648s) is within the limit (172800.0s)
[2025-11-27 05:16:42] 2025-11-27 04:15:32,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:16:42] 2025-11-27 04:15:32,396 | INFO     | job 6895339546 has completed (purged errors)
[2025-11-27 05:16:42] 2025-11-27 04:15:32,397 | INFO     | overall cleanup function is called
[2025-11-27 05:16:42] 2025-11-27 04:15:33,412 | INFO     | --- collectZombieJob: --- 10, [16360]
[2025-11-27 05:16:42] 2025-11-27 04:15:33,412 | INFO     | zombie collector waiting for pid 16360
[2025-11-27 05:16:42] 2025-11-27 04:15:33,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:16:42] 2025-11-27 04:15:33,412 | INFO     | collected zombie processes
[2025-11-27 05:16:42] 2025-11-27 04:15:33,412 | INFO     | will attempt to kill all subprocesses of pid=16360
[2025-11-27 05:16:42] 2025-11-27 04:15:33,537 | INFO     | process IDs to be killed: [16360] (in reverse order)
[2025-11-27 05:16:42] 2025-11-27 04:15:34,609 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:16:42] 2025-11-27 04:15:34,609 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:16:42] 2025-11-27 04:15:34,612 | INFO     | did not find any defunct processes belonging to 16360
[2025-11-27 05:16:42] 2025-11-27 04:15:34,615 | INFO     | did not find any defunct processes belonging to 16360
[2025-11-27 05:16:42] 2025-11-27 04:15:34,672 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:16:42] 2025-11-27 04:15:34,673 | INFO     | ready for new job
[2025-11-27 05:16:42] 2025-11-27 04:15:34,673 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:16:42] 2025-11-27 04:15:34,678 | INFO     | ***************************************
[2025-11-27 05:16:42] 2025-11-27 04:15:34,678 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:16:42] 2025-11-27 04:15:34,679 | INFO     | ***************************************
[2025-11-27 05:16:42] 2025-11-27 04:15:34,679 | INFO     | 
[2025-11-27 05:16:42] 2025-11-27 04:15:34,679 | INFO     | pilot is running in a VM
[2025-11-27 05:16:42] 2025-11-27 04:15:34,679 | INFO     | architecture information:
[2025-11-27 05:16:42] 2025-11-27 04:15:34,692 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:16:42] 2025-11-27 04:15:34,915 | INFO     | cat /etc/os-release:
[2025-11-27 05:16:42] NAME="CentOS Linux"
[2025-11-27 05:16:42] VERSION="7 (Core)"
[2025-11-27 05:16:42] ID="centos"
[2025-11-27 05:16:42] ID_LIKE="rhel fedora"
[2025-11-27 05:16:42] VERSION_ID="7"
[2025-11-27 05:16:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:16:42] ANSI_COLOR="0;31"
[2025-11-27 05:16:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:16:42] HOME_URL="https://www.centos.org/"
[2025-11-27 05:16:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:16:42] 
[2025-11-27 05:16:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:16:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:16:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:16:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:16:42] 
[2025-11-27 05:16:42] 2025-11-27 04:15:34,916 | INFO     | ***************************************
[2025-11-27 05:16:42] 2025-11-27 04:15:35,419 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-11-27 05:16:42] 2025-11-27 04:15:35,866 | INFO     | sufficient remaining disk space (495258173440 B)
[2025-11-27 05:16:42] 2025-11-27 04:15:35,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:16:42] 2025-11-27 04:15:35,866 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:16:42] 2025-11-27 04:15:35,866 | INFO     | update_server=False
[2025-11-27 05:16:42] 2025-11-27 04:15:35,866 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:16:42] 2025-11-27 04:15:35,868 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:16:42] 2025-11-27 04:15:35,868 | INFO     | aborting loop
[2025-11-27 05:16:42] 2025-11-27 04:15:36,054 | INFO     | all data control threads have been joined
[2025-11-27 05:16:42] 2025-11-27 04:15:36,207 | INFO     | all payload control threads have been joined
[2025-11-27 05:16:42] 2025-11-27 04:15:36,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:16:42] 2025-11-27 04:15:36,872 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:36,874 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:37,059 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:37,060 | INFO     | [data] control thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:37,061 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:37,213 | INFO     | [payload] control thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:37,364 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:16:42] 2025-11-27 04:15:37,478 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:37,529 | INFO     | all job control threads have been joined
[2025-11-27 05:16:42] 2025-11-27 04:15:37,557 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:37,753 | INFO     | [job] validate thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:37,761 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:37,772 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:38,067 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:38,373 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:38,536 | INFO     | [job] control thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:38,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:16:42] 2025-11-27 04:15:39,371 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:15:42,889 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:16:42] 2025-11-27 04:16:05,369 | INFO     | PID=9792 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 05:16:42] 2025-11-27 04:16:05,369 | INFO     | .. there are 9 such processes running
[2025-11-27 05:16:42] 2025-11-27 04:16:05,370 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:16:42] 2025-11-27 04:16:05,370 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:16:42] 2025-11-27 04:16:05,370 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:16:42] 2025-11-27 04:16:33,092 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:16:42] 2025-11-27 04:16:34,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337949595456)>', '<ExcThread(monitor, started 140337368520448)>']
[2025-11-27 05:16:42] 2025-11-27 04:16:34,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:16:42] 2025-11-27 04:16:34,537 | INFO     | [monitor] control thread has ended
[2025-11-27 05:16:42] 2025-11-27 04:16:39,478 | INFO     | all workflow threads have been joined
[2025-11-27 05:16:42] 2025-11-27 04:16:39,478 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:16:42] 2025-11-27 04:16:39,478 | INFO     | traces error code: 0
[2025-11-27 05:16:42] 2025-11-27 04:16:39,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:16:42] 2025-11-27 04:16:39,622 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:16:42] 2025-11-27 04:16:39,627 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:16:42] 2025-11-27 04:16:39,630 [wrapper] pilotpid: 9792
[2025-11-27 05:16:42] 2025-11-27 04:16:39,632 [wrapper] Pilot exit status: 0
[2025-11-27 05:16:42] 2025-11-27 04:16:39,651 [wrapper] pandaids: 6895339546
[2025-11-27 05:16:42] 2025-11-27 04:16:39,691 [wrapper] cleanup supervisor_pilot 23674 9793
[2025-11-27 05:16:42] 2025-11-27 04:16:39,694 [wrapper] Test setup, not cleaning
[2025-11-27 05:16:42] 2025-11-27 04:16:39,735 [wrapper] apfmon messages muted
[2025-11-27 05:16:42] 2025-11-27 04:16:39,775 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:16:42] 2025-11-27 04:16:39,861 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:16:42]  *** Error codes and diagnostics ***
[2025-11-27 05:16:42]     "exeErrorCode": 0,
[2025-11-27 05:16:42]     "exeErrorDiag": "",
[2025-11-27 05:16:42]     "pilotErrorCode": 0,
[2025-11-27 05:16:42]     "pilotErrorDiag": "",
[2025-11-27 05:16:42]  *** Listing of results directory ***
[2025-11-27 05:16:42] total 1318040
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc    576529 Nov 22 11:20 pilot3.tar.gz
[2025-11-27 05:16:42] -rwx------. 1 boinc boinc     36292 Nov 22 11:49 runpilot2-wrapper.sh
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc      5112 Nov 22 11:49 queuedata.json
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc       100 Nov 26 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:16:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 05:24 run_atlas
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc       105 Nov 26 05:24 job.xml
[2025-11-27 05:16:42] -rw-r--r--. 2 boinc boinc 409362316 Nov 26 05:24 EVNT.47483658._001084.pool.root.1
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc      6392 Nov 26 05:24 init_data.xml
[2025-11-27 05:16:42] -rw-r--r--. 2 boinc boinc     15847 Nov 26 05:24 start_atlas.sh
[2025-11-27 05:16:42] drwxrwx--x. 2 boinc boinc        68 Nov 26 05:24 shared
[2025-11-27 05:16:42] -rw-r--r--. 2 boinc boinc    590102 Nov 26 05:24 input.tar.gz
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc         0 Nov 26 05:24 boinc_lockfile
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc      2784 Nov 26 05:24 pandaJob.out
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc    991877 Nov 26 05:28 agis_schedconf.cvmfs.json
[2025-11-27 05:16:42] drwx------. 5 boinc boinc      4096 Nov 26 05:28 pilot3
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc       533 Nov 27 04:49 boinc_task_state.xml
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc 908557870 Nov 27 05:12 HITS.47556149._000705.pool.root.1
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc      1031 Nov 27 05:13 memory_monitor_summary.json
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc   1516240 Nov 27 05:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc   2483507 Nov 27 05:13 log.47556149._000705.job.log.tgz.1
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc      8640 Nov 27 05:15 heartbeat.json
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc        95 Nov 27 05:16 pilot_heartbeat.json
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc        29 Nov 27 05:16 wrapper_checkpoint.txt
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc      8192 Nov 27 05:16 boinc_mmap_file
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc      4884 Nov 27 05:16 pilotlog.txt
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc  11442085 Nov 27 05:16 log.47556149._000705.job.log.1
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc       353 Nov 27 05:16 output.list
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc       620 Nov 27 05:16 runtime_log
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc  13946880 Nov 27 05:16 result.tar.gz
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc      8833 Nov 27 05:16 runtime_log.err
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc       662 Nov 27 05:16 FlzNDmRM0g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmC8JKDmsETzBo.diag
[2025-11-27 05:16:42] -rw-r--r--. 1 boinc boinc     21523 Nov 27 05:16 stderr.txt
[2025-11-27 05:16:42] HITS file was successfully produced:
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc 908557870 Nov 27 05:12 shared/HITS.pool.root.1
[2025-11-27 05:16:42]  *** Contents of shared directory: ***
[2025-11-27 05:16:42] total 1301248
[2025-11-27 05:16:42] -rw-r--r--. 2 boinc boinc 409362316 Nov 26 05:24 ATLAS.root_0
[2025-11-27 05:16:42] -rw-r--r--. 2 boinc boinc     15847 Nov 26 05:24 start_atlas.sh
[2025-11-27 05:16:42] -rw-r--r--. 2 boinc boinc    590102 Nov 26 05:24 input.tar.gz
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc 908557870 Nov 27 05:12 HITS.pool.root.1
[2025-11-27 05:16:42] -rw-------. 1 boinc boinc  13946880 Nov 27 05:16 result.tar.gz
05:16:44 (5953): run_atlas exited; CPU time 312607.691971
05:16:44 (5953): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN