Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:04:26 (32508): wrapper (7.7.26015): starting
05:04:26 (32508): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 05:04:26] Arguments: --nthreads 12
[2025-11-23 05:04:26] Threads: 12
[2025-11-23 05:04:26] Checking for CVMFS
[2025-11-23 05:04:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 05:04:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 05:04:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 05:04:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 05:04:26] 2.11.2.0 2979 283232 93024 153203 2 82 11431895 20275201 1 130560 1 126782265 99.974 15878455 13782 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 05:04:26] CVMFS is ok
[2025-11-23 05:04:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 05:04:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 05:04:26] Further information can be found at the LHC@home message board.
[2025-11-23 05:04:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 05:04:26] Checking for apptainer binary...
[2025-11-23 05:04:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 05:04:27] Running /usr/bin/apptainer --version
[2025-11-23 05:04:27] apptainer version 1.3.2-1.el7
[2025-11-23 05:04:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 05:04:28] c-205-21.aglt2.org
[2025-11-23 05:04:28] apptainer works
[2025-11-23 05:04:28] Set ATHENA_PROC_NUMBER=12
[2025-11-23 05:04:28] Set ATHENA_CORE_NUMBER=12
[2025-11-23 05:04:28] Starting ATLAS job with PandaID=6895331551
[2025-11-23 05:04:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 12:15:31]  *** The last 200 lines of the pilot log: ***
[2025-11-23 12:15:31] 2025-11-23 17:14:49,223 | INFO     | monitor loop #1932: job 0:6895331551 is in state 'finished'
[2025-11-23 12:15:31] 2025-11-23 17:14:49,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 12:15:31] 2025-11-23 17:14:49,610 | INFO     | time since job start (25806s) is within the limit (172800.0s)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,443 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 12:15:31] 2025-11-23 17:14:51,447 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-23 12:15:31] 2025-11-23 17:14:51,450 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895331551/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,451 | INFO     | extracted standard info from prmon json
[2025-11-23 12:15:31] 2025-11-23 17:14:51,451 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 12:15:31] 2025-11-23 17:14:51,451 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 12:15:31] 2025-11-23 17:14:51,457 | INFO     | fitting pss+swap vs Time
[2025-11-23 12:15:31] 2025-11-23 17:14:51,458 | INFO     | sum of square deviations: 23468855947.957497
[2025-11-23 12:15:31] 2025-11-23 17:14:51,462 | INFO     | sum of deviations: 389657325325.0282
[2025-11-23 12:15:31] 2025-11-23 17:14:51,462 | INFO     | mean x: 1763905184.2836878
[2025-11-23 12:15:31] 2025-11-23 17:14:51,462 | INFO     | mean y: 3417001.6997635933
[2025-11-23 12:15:31] 2025-11-23 17:14:51,462 | INFO     | intersect: -29282994647.81016
[2025-11-23 12:15:31] 2025-11-23 17:14:51,462 | INFO     | chi2: 6.086146718866814
[2025-11-23 12:15:31] 2025-11-23 17:14:51,463 | INFO     | sum of square deviations: 22646449220.05024
[2025-11-23 12:15:31] 2025-11-23 17:14:51,468 | INFO     | sum of deviations: 561674855707.9476
[2025-11-23 12:15:31] 2025-11-23 17:14:51,468 | INFO     | mean x: 1763905031.7870812
[2025-11-23 12:15:31] 2025-11-23 17:14:51,468 | INFO     | mean y: 3448866.8421052634
[2025-11-23 12:15:31] 2025-11-23 17:14:51,468 | INFO     | intersect: -43744738523.80499
[2025-11-23 12:15:31] 2025-11-23 17:14:51,469 | INFO     | chi2: 2.6653613904476203
[2025-11-23 12:15:31] 2025-11-23 17:14:51,469 | INFO     | current chi2=2.6653613904476203 (change=56.20609371467984 %)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,469 | INFO     | sum of square deviations: 21843484717.133114
[2025-11-23 12:15:31] 2025-11-23 17:14:51,473 | INFO     | sum of deviations: 596118209774.4553
[2025-11-23 12:15:31] 2025-11-23 17:14:51,473 | INFO     | mean x: 1763904879.290557
[2025-11-23 12:15:31] 2025-11-23 17:14:51,473 | INFO     | mean y: 3455369.6295399517
[2025-11-23 12:15:31] 2025-11-23 17:14:51,473 | INFO     | intersect: -48134276886.541306
[2025-11-23 12:15:31] 2025-11-23 17:14:51,474 | INFO     | chi2: 2.3298227357009704
[2025-11-23 12:15:31] 2025-11-23 17:14:51,474 | INFO     | current chi2=2.3298227357009704 (change=12.588861531092396 %)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,474 | INFO     | right removable region: 412
[2025-11-23 12:15:31] 2025-11-23 17:14:51,475 | INFO     | sum of square deviations: 22646401578.62185
[2025-11-23 12:15:31] 2025-11-23 17:14:51,478 | INFO     | sum of deviations: 261494044854.3879
[2025-11-23 12:15:31] 2025-11-23 17:14:51,478 | INFO     | mean x: 1763905336.784689
[2025-11-23 12:15:31] 2025-11-23 17:14:51,479 | INFO     | mean y: 3440680.40430622
[2025-11-23 12:15:31] 2025-11-23 17:14:51,479 | INFO     | intersect: -20364066256.834206
[2025-11-23 12:15:31] 2025-11-23 17:14:51,479 | INFO     | chi2: 3.9937929685444713
[2025-11-23 12:15:31] 2025-11-23 17:14:51,479 | INFO     | current chi2=3.9937929685444713 (change=34.3789567845305 %)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,480 | INFO     | sum of square deviations: 21843389922.285763
[2025-11-23 12:15:31] 2025-11-23 17:14:51,483 | INFO     | sum of deviations: 219250686154.42862
[2025-11-23 12:15:31] 2025-11-23 17:14:51,484 | INFO     | mean x: 1763905489.2857144
[2025-11-23 12:15:31] 2025-11-23 17:14:51,484 | INFO     | mean y: 3448701.225181598
[2025-11-23 12:15:31] 2025-11-23 17:14:51,484 | INFO     | intersect: -17701563671.551548
[2025-11-23 12:15:31] 2025-11-23 17:14:51,484 | INFO     | chi2: 3.8911610629900806
[2025-11-23 12:15:31] 2025-11-23 17:14:51,484 | INFO     | current chi2=3.8911610629900806 (change=2.569785323443911 %)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,485 | INFO     | left removable region: 20
[2025-11-23 12:15:31] 2025-11-23 17:14:51,485 | INFO     | sum of square deviations: 18677902888.84706
[2025-11-23 12:15:31] 2025-11-23 17:14:51,488 | INFO     | sum of deviations: 366841513803.6943
[2025-11-23 12:15:31] 2025-11-23 17:14:51,489 | INFO     | mean x: 1763905458.7908163
[2025-11-23 12:15:31] 2025-11-23 17:14:51,489 | INFO     | mean y: 3499904.5816326533
[2025-11-23 12:15:31] 2025-11-23 17:14:51,489 | INFO     | intersect: -34640311692.479576
[2025-11-23 12:15:31] 2025-11-23 17:14:51,489 | INFO     | chi2: 0.05094456097661966
[2025-11-23 12:15:31] 2025-11-23 17:14:51,489 | INFO     | current memory leak: 19.64 B/s (using 392 data points, chi2=0.05)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,490 | INFO     | could have reported an average CPU frequency of 2323 MHz (18 samples)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,490 | INFO     | ..............................
[2025-11-23 12:15:31] 2025-11-23 17:14:51,490 | INFO     | . Timing measurements:
[2025-11-23 12:15:31] 2025-11-23 17:14:51,490 | INFO     | . get job = 0 s
[2025-11-23 12:15:31] 2025-11-23 17:14:51,490 | INFO     | . initial setup = 2 s
[2025-11-23 12:15:31] 2025-11-23 17:14:51,490 | INFO     | . payload setup = 7 s
[2025-11-23 12:15:31] 2025-11-23 17:14:51,490 | INFO     | . stage-in = 0 s
[2025-11-23 12:15:31] 2025-11-23 17:14:51,491 | INFO     | . payload execution = 25769 s
[2025-11-23 12:15:31] 2025-11-23 17:14:51,491 | INFO     | . stage-out = 3 s
[2025-11-23 12:15:31] 2025-11-23 17:14:51,491 | INFO     | . log creation = 0 s
[2025-11-23 12:15:31] 2025-11-23 17:14:51,491 | INFO     | ..............................
[2025-11-23 12:15:31] 2025-11-23 17:14:51,572 | INFO     | 
[2025-11-23 12:15:31] 2025-11-23 17:14:51,572 | INFO     | job summary report
[2025-11-23 12:15:31] 2025-11-23 17:14:51,572 | INFO     | --------------------------------------------------
[2025-11-23 12:15:31] 2025-11-23 17:14:51,573 | INFO     | PanDA job id: 6895331551
[2025-11-23 12:15:31] 2025-11-23 17:14:51,573 | INFO     | task id: 47556137
[2025-11-23 12:15:31] 2025-11-23 17:14:51,573 | INFO     | errors: (none)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,573 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 12:15:31] 2025-11-23 17:14:51,573 | INFO     | pilot state: finished 
[2025-11-23 12:15:31] 2025-11-23 17:14:51,573 | INFO     | transexitcode: 0
[2025-11-23 12:15:31] 2025-11-23 17:14:51,574 | INFO     | exeerrorcode: 0
[2025-11-23 12:15:31] 2025-11-23 17:14:51,574 | INFO     | exeerrordiag: 
[2025-11-23 12:15:31] 2025-11-23 17:14:51,574 | INFO     | exitcode: 0
[2025-11-23 12:15:31] 2025-11-23 17:14:51,574 | INFO     | exitmsg: OK
[2025-11-23 12:15:31] 2025-11-23 17:14:51,574 | INFO     | cpuconsumptiontime: 296334 s
[2025-11-23 12:15:31] 2025-11-23 17:14:51,574 | INFO     | nevents: 1000
[2025-11-23 12:15:31] 2025-11-23 17:14:51,575 | INFO     | neventsw: 0
[2025-11-23 12:15:31] 2025-11-23 17:14:51,575 | INFO     | pid: 11084
[2025-11-23 12:15:31] 2025-11-23 17:14:51,575 | INFO     | pgrp: 11084
[2025-11-23 12:15:31] 2025-11-23 17:14:51,575 | INFO     | corecount: 12
[2025-11-23 12:15:31] 2025-11-23 17:14:51,575 | INFO     | event service: False
[2025-11-23 12:15:31] 2025-11-23 17:14:51,575 | INFO     | sizes: {0: 2298630, 1: 2298829, 6: 2299091, 11: 2299119, 25781: 2336353, 25785: 2345375, 25786: 2345559, 25792: 2345805}
[2025-11-23 12:15:31] 2025-11-23 17:14:51,576 | INFO     | --------------------------------------------------
[2025-11-23 12:15:31] 2025-11-23 17:14:51,576 | INFO     | 
[2025-11-23 12:15:31] 2025-11-23 17:14:51,576 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 12:15:31] 2025-11-23 17:14:51,601 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,602 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,602 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,602 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,602 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,602 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,602 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,604 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,604 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,604 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,604 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,604 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,604 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,605 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 12:15:31] 2025-11-23 17:14:51,605 | INFO     | job 6895331551 has completed (purged errors)
[2025-11-23 12:15:31] 2025-11-23 17:14:51,605 | INFO     | overall cleanup function is called
[2025-11-23 12:15:31] 2025-11-23 17:14:52,621 | INFO     | --- collectZombieJob: --- 10, [11084]
[2025-11-23 12:15:31] 2025-11-23 17:14:52,622 | INFO     | zombie collector waiting for pid 11084
[2025-11-23 12:15:31] 2025-11-23 17:14:52,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 12:15:31] 2025-11-23 17:14:52,622 | INFO     | collected zombie processes
[2025-11-23 12:15:31] 2025-11-23 17:14:52,622 | INFO     | will attempt to kill all subprocesses of pid=11084
[2025-11-23 12:15:31] 2025-11-23 17:14:52,715 | INFO     | process IDs to be killed: [11084] (in reverse order)
[2025-11-23 12:15:31] 2025-11-23 17:14:52,767 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 12:15:31] 2025-11-23 17:14:52,767 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 12:15:31] 2025-11-23 17:14:52,771 | INFO     | did not find any defunct processes belonging to 11084
[2025-11-23 12:15:31] 2025-11-23 17:14:52,774 | INFO     | did not find any defunct processes belonging to 11084
[2025-11-23 12:15:31] 2025-11-23 17:14:52,776 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 12:15:31] 2025-11-23 17:14:52,776 | INFO     | ready for new job
[2025-11-23 12:15:31] 2025-11-23 17:14:52,776 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 12:15:31] 2025-11-23 17:14:52,779 | INFO     | ***************************************
[2025-11-23 12:15:31] 2025-11-23 17:14:52,779 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 12:15:31] 2025-11-23 17:14:52,779 | INFO     | ***************************************
[2025-11-23 12:15:31] 2025-11-23 17:14:52,780 | INFO     | 
[2025-11-23 12:15:31] 2025-11-23 17:14:52,780 | INFO     | architecture information:
[2025-11-23 12:15:31] 2025-11-23 17:14:52,781 | INFO     | executing command: cat /etc/os-release
[2025-11-23 12:15:31] 2025-11-23 17:14:52,796 | INFO     | cat /etc/os-release:
[2025-11-23 12:15:31] NAME="CentOS Linux"
[2025-11-23 12:15:31] VERSION="7 (Core)"
[2025-11-23 12:15:31] ID="centos"
[2025-11-23 12:15:31] ID_LIKE="rhel fedora"
[2025-11-23 12:15:31] VERSION_ID="7"
[2025-11-23 12:15:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 12:15:31] ANSI_COLOR="0;31"
[2025-11-23 12:15:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 12:15:31] HOME_URL="https://www.centos.org/"
[2025-11-23 12:15:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 12:15:31] 
[2025-11-23 12:15:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 12:15:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 12:15:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 12:15:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 12:15:31] 
[2025-11-23 12:15:31] 2025-11-23 17:14:52,796 | INFO     | ***************************************
[2025-11-23 12:15:31] 2025-11-23 17:14:53,299 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 12:15:31] 2025-11-23 17:14:53,316 | INFO     | sufficient remaining disk space (28239200256 B)
[2025-11-23 12:15:31] 2025-11-23 17:14:53,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 12:15:31] 2025-11-23 17:14:53,316 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 12:15:31] 2025-11-23 17:14:53,317 | INFO     | update_server=False
[2025-11-23 12:15:31] 2025-11-23 17:14:53,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 12:15:31] 2025-11-23 17:14:53,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 12:15:31] 2025-11-23 17:14:53,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:15:31] 2025-11-23 17:14:53,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 12:15:31] 2025-11-23 17:14:53,318 | INFO     | aborting loop
[2025-11-23 12:15:31] 2025-11-23 17:14:54,243 | INFO     | all data control threads have been joined
[2025-11-23 12:15:31] 2025-11-23 17:14:54,251 | INFO     | all job control threads have been joined
[2025-11-23 12:15:31] 2025-11-23 17:14:54,321 | INFO     | [job] retrieve thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:54,324 | INFO     | [job] queue monitor thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:54,324 | INFO     | [job] job monitor thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:54,457 | INFO     | all payload control threads have been joined
[2025-11-23 12:15:31] 2025-11-23 17:14:54,461 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:54,797 | INFO     | [data] copytool_in thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:54,914 | INFO     | [payload] validate_post thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:54,965 | INFO     | [payload] failed_post thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:55,252 | INFO     | [data] control thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:55,257 | INFO     | [job] control thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:55,323 | INFO     | [data] copytool_out thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:55,462 | INFO     | [payload] control thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:55,525 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:55,601 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:55,705 | INFO     | [job] validate thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:14:56,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 12:15:31] 2025-11-23 17:15:00,730 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:15:03,796 | INFO     | job.realtimelogging is not enabled
[2025-11-23 12:15:31] 2025-11-23 17:15:04,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 12:15:31] 2025-11-23 17:15:22,868 | INFO     | PID=3917 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 12:15:31] 2025-11-23 17:15:22,869 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 12:15:31] 2025-11-23 17:15:22,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 12:15:31] 2025-11-23 17:15:22,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 12:15:31] 2025-11-23 17:15:25,666 | INFO     | [monitor] cgroup control has ended
[2025-11-23 12:15:31] 2025-11-23 17:15:26,388 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140317267482432)>', '<ExcThread(monitor, started 140316246013696)>']
[2025-11-23 12:15:31] 2025-11-23 17:15:26,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 12:15:31] 2025-11-23 17:15:26,890 | INFO     | [monitor] control thread has ended
[2025-11-23 12:15:31] 2025-11-23 17:15:31,393 | INFO     | all workflow threads have been joined
[2025-11-23 12:15:31] 2025-11-23 17:15:31,394 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 12:15:31] 2025-11-23 17:15:31,394 | INFO     | traces error code: 0
[2025-11-23 12:15:31] 2025-11-23 17:15:31,394 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 12:15:31] 2025-11-23 17:15:31,512 [wrapper] ==== pilot stdout END ====
[2025-11-23 12:15:31] 2025-11-23 17:15:31,517 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 12:15:31] 2025-11-23 17:15:31,521 [wrapper] pilotpid: 3917
[2025-11-23 12:15:31] 2025-11-23 17:15:31,525 [wrapper] Pilot exit status: 0
[2025-11-23 12:15:31] 2025-11-23 17:15:31,539 [wrapper] pandaids: 6895331551
[2025-11-23 12:15:31] 2025-11-23 17:15:31,591 [wrapper] cleanup supervisor_pilot  2471 3918
[2025-11-23 12:15:31] 2025-11-23 17:15:31,595 [wrapper] Test setup, not cleaning
[2025-11-23 12:15:31] 2025-11-23 17:15:31,599 [wrapper] apfmon messages muted
[2025-11-23 12:15:31] 2025-11-23 17:15:31,603 [wrapper] ==== wrapper stdout END ====
[2025-11-23 12:15:31] 2025-11-23 17:15:31,607 [wrapper] ==== wrapper stderr END ====
[2025-11-23 12:15:31]  *** Error codes and diagnostics ***
[2025-11-23 12:15:31]     "exeErrorCode": 0,
[2025-11-23 12:15:31]     "exeErrorDiag": "",
[2025-11-23 12:15:31]     "pilotErrorCode": 0,
[2025-11-23 12:15:31]     "pilotErrorDiag": "",
[2025-11-23 12:15:31]  *** Listing of results directory ***
[2025-11-23 12:15:31] total 1315880
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 18:30 pilot3.tar.gz
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 18:40 queuedata.json
[2025-11-23 12:15:31] -rwx------ 1 boincer umatlas     36292 Nov 21 18:40 runpilot2-wrapper.sh
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas       100 Nov 23 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 12:15:31] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 05:04 run_atlas
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas       105 Nov 23 05:04 job.xml
[2025-11-23 12:15:31] -rw-r--r-- 2 boincer umatlas 408659004 Nov 23 05:04 EVNT.47483658._000176.pool.root.1
[2025-11-23 12:15:31] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 05:04 start_atlas.sh
[2025-11-23 12:15:31] drwxrwx--x 2 boincer umatlas      4096 Nov 23 05:04 shared
[2025-11-23 12:15:31] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 05:04 input.tar.gz
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas         0 Nov 23 05:04 boinc_lockfile
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas      2783 Nov 23 05:04 pandaJob.out
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas        57 Nov 23 05:04 setup.sh.local
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas    989784 Nov 23 05:04 agis_schedconf.cvmfs.json
[2025-11-23 12:15:31] drwx------ 5 boincer umatlas      4096 Nov 23 05:04 pilot3
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas       532 Nov 23 12:04 boinc_task_state.xml
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas      5956 Nov 23 12:10 init_data.xml
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas 923225776 Nov 23 12:14 HITS.47556137._001751.pool.root.1
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas      1061 Nov 23 12:14 memory_monitor_summary.json
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas   1526164 Nov 23 12:14 agis_ddmendpoints.agis.ALL.json
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas   2194018 Nov 23 12:14 log.47556137._001751.job.log.tgz.1
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas      8664 Nov 23 12:14 heartbeat.json
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas        29 Nov 23 12:15 wrapper_checkpoint.txt
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 12:15 boinc_mmap_file
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas        95 Nov 23 12:15 pilot_heartbeat.json
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas      4817 Nov 23 12:15 pilotlog.txt
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas   3631565 Nov 23 12:15 log.47556137._001751.job.log.1
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas       353 Nov 23 12:15 output.list
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas       620 Nov 23 12:15 runtime_log
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas   5847040 Nov 23 12:15 result.tar.gz
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas      9345 Nov 23 12:15 runtime_log.err
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas       670 Nov 23 12:15 dVMNDmGvpg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRnJKDmItm5cm.diag
[2025-11-23 12:15:31] -rw-r--r-- 1 boincer umatlas     21298 Nov 23 12:15 stderr.txt
[2025-11-23 12:15:31] HITS file was successfully produced:
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas 923225776 Nov 23 12:14 shared/HITS.pool.root.1
[2025-11-23 12:15:31]  *** Contents of shared directory: ***
[2025-11-23 12:15:31] total 1306984
[2025-11-23 12:15:31] -rw-r--r-- 2 boincer umatlas 408659004 Nov 23 05:04 ATLAS.root_0
[2025-11-23 12:15:31] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 05:04 start_atlas.sh
[2025-11-23 12:15:31] -rw-r--r-- 2 boincer umatlas    590102 Nov 23 05:04 input.tar.gz
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas 923225776 Nov 23 12:14 HITS.pool.root.1
[2025-11-23 12:15:31] -rw------- 1 boincer umatlas   5847040 Nov 23 12:15 result.tar.gz
12:15:32 (32508): run_atlas exited; CPU time 289710.065162
12:15:32 (32508): called boinc_finish(0)

</stderr_txt>
]]>

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