Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:55:49 (10490): wrapper (7.7.26015): starting
21:55:49 (10490): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:55:49] Arguments: --nthreads 8
[2025-11-25 21:55:49] Threads: 8
[2025-11-25 21:55:49] Checking for CVMFS
[2025-11-25 21:55:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:55:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:55:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:55:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:55:51] 2.11.2.0 22738 284291 136672 153297 2 84 20839693 25165824 4632 130560 12 140884066 99.882 76888741 2880 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 21:55:51] CVMFS is ok
[2025-11-25 21:55:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:55:51] Checking for apptainer binary...
[2025-11-25 21:55:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:55:51] Running /usr/bin/apptainer --version
[2025-11-25 21:55:52] apptainer version 1.3.2-1.el7
[2025-11-25 21:55:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:55:59] cg-vwn395.simple-grid.lan
[2025-11-25 21:55:59] apptainer works
[2025-11-25 21:55:59] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:55:59] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:55:59] Starting ATLAS job with PandaID=6895331919
[2025-11-25 21:55:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:05:36]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:05:36] 2025-11-26 21:04:34,503 | INFO     | time since job start (86679s) is within the limit (172800.0s)
[2025-11-26 22:05:36] 2025-11-26 21:04:34,676 | INFO     | monitor loop #5827: job 0:6895331919 is in state 'finished'
[2025-11-26 22:05:36] 2025-11-26 21:04:34,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:05:36] 2025-11-26 21:04:36,510 | INFO     | time since job start (86681s) is within the limit (172800.0s)
[2025-11-26 22:05:36] 2025-11-26 21:04:37,181 | INFO     | monitor loop #5828: job 0:6895331919 is in state 'finished'
[2025-11-26 22:05:36] 2025-11-26 21:04:37,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:05:36] 2025-11-26 21:04:38,519 | INFO     | time since job start (86683s) is within the limit (172800.0s)
[2025-11-26 22:05:36] 2025-11-26 21:04:39,686 | INFO     | monitor loop #5829: job 0:6895331919 is in state 'finished'
[2025-11-26 22:05:36] 2025-11-26 21:04:39,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:05:36] 2025-11-26 21:04:40,525 | INFO     | time since job start (86685s) is within the limit (172800.0s)
[2025-11-26 22:05:36] 2025-11-26 21:04:42,196 | INFO     | monitor loop #5830: job 0:6895331919 is in state 'finished'
[2025-11-26 22:05:36] 2025-11-26 21:04:42,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:05:36] 2025-11-26 21:04:42,533 | INFO     | time since job start (86687s) is within the limit (172800.0s)
[2025-11-26 22:05:36] 2025-11-26 21:04:44,540 | INFO     | time since job start (86689s) is within the limit (172800.0s)
[2025-11-26 22:05:36] 2025-11-26 21:04:44,701 | INFO     | monitor loop #5831: job 0:6895331919 is in state 'finished'
[2025-11-26 22:05:36] 2025-11-26 21:04:44,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:05:36] 2025-11-26 21:04:45,331 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 22:05:36] 2025-11-26 21:04:45,332 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 22:05:36] 2025-11-26 21:04:45,334 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895331919/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:05:36] 2025-11-26 21:04:45,335 | INFO     | extracted standard info from prmon json
[2025-11-26 22:05:36] 2025-11-26 21:04:45,335 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:05:36] 2025-11-26 21:04:45,335 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:05:36] 2025-11-26 21:04:45,362 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:05:36] 2025-11-26 21:04:45,364 | INFO     | sum of square deviations: 872930179049.5577
[2025-11-26 22:05:36] 2025-11-26 21:04:45,479 | INFO     | sum of deviations: 3647489310704.419
[2025-11-26 22:05:36] 2025-11-26 21:04:45,479 | INFO     | mean x: 1764147935.6232295
[2025-11-26 22:05:36] 2025-11-26 21:04:45,479 | INFO     | mean y: 2836901.218838527
[2025-11-26 22:05:36] 2025-11-26 21:04:45,479 | INFO     | intersect: -7368555327.072638
[2025-11-26 22:05:36] 2025-11-26 21:04:45,481 | INFO     | chi2: 23.461399560013046
[2025-11-26 22:05:36] 2025-11-26 21:04:45,487 | INFO     | sum of square deviations: 863690061608.2274
[2025-11-26 22:05:36] 2025-11-26 21:04:45,550 | INFO     | sum of deviations: 4135692710412.2266
[2025-11-26 22:05:36] 2025-11-26 21:04:45,551 | INFO     | mean x: 1764147783.127221
[2025-11-26 22:05:36] 2025-11-26 21:04:45,551 | INFO     | mean y: 2844956.490405117
[2025-11-26 22:05:36] 2025-11-26 21:04:45,551 | INFO     | intersect: -8444598693.820596
[2025-11-26 22:05:36] 2025-11-26 21:04:45,552 | INFO     | chi2: 19.986175027681327
[2025-11-26 22:05:36] 2025-11-26 21:04:45,553 | INFO     | current chi2=19.986175027681327 (change=14.812520128828096 %)
[2025-11-26 22:05:36] 2025-11-26 21:04:45,553 | INFO     | right removable region: 1406
[2025-11-26 22:05:36] 2025-11-26 21:04:45,555 | INFO     | sum of square deviations: 863689094148.227
[2025-11-26 22:05:36] 2025-11-26 21:04:45,616 | INFO     | sum of deviations: 3048060056777.511
[2025-11-26 22:05:36] 2025-11-26 21:04:45,616 | INFO     | mean x: 1764148088.127221
[2025-11-26 22:05:36] 2025-11-26 21:04:45,616 | INFO     | mean y: 2846793.0753375976
[2025-11-26 22:05:36] 2025-11-26 21:04:45,616 | INFO     | intersect: -6223038607.230702
[2025-11-26 22:05:36] 2025-11-26 21:04:45,618 | INFO     | chi2: 18.57863545628931
[2025-11-26 22:05:36] 2025-11-26 21:04:45,618 | INFO     | current chi2=18.57863545628931 (change=20.81190464035992 %)
[2025-11-26 22:05:36] 2025-11-26 21:04:45,618 | INFO     | left removable region: 10
[2025-11-26 22:05:36] 2025-11-26 21:04:45,620 | INFO     | sum of square deviations: 843589900537.1405
[2025-11-26 22:05:36] 2025-11-26 21:04:45,673 | INFO     | sum of deviations: 3105215230378.8877
[2025-11-26 22:05:36] 2025-11-26 21:04:45,673 | INFO     | mean x: 1764148057.6361032
[2025-11-26 22:05:36] 2025-11-26 21:04:45,673 | INFO     | mean y: 2865466.958452722
[2025-11-26 22:05:36] 2025-11-26 21:04:45,673 | INFO     | intersect: -6490881570.229764
[2025-11-26 22:05:36] 2025-11-26 21:04:45,676 | INFO     | chi2: 10.617039903189491
[2025-11-26 22:05:36] 2025-11-26 21:04:45,676 | INFO     | current memory leak: 3.68 B/s (using 1396 data points, chi2=10.62)
[2025-11-26 22:05:36] 2025-11-26 21:04:45,678 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 22:05:36] 2025-11-26 21:04:45,678 | INFO     | ..............................
[2025-11-26 22:05:36] 2025-11-26 21:04:45,678 | INFO     | . Timing measurements:
[2025-11-26 22:05:36] 2025-11-26 21:04:45,678 | INFO     | . get job = 0 s
[2025-11-26 22:05:36] 2025-11-26 21:04:45,678 | INFO     | . initial setup = 7 s
[2025-11-26 22:05:36] 2025-11-26 21:04:45,678 | INFO     | . payload setup = 154 s
[2025-11-26 22:05:36] 2025-11-26 21:04:45,678 | INFO     | . stage-in = 0 s
[2025-11-26 22:05:36] 2025-11-26 21:04:45,678 | INFO     | . payload execution = 86232 s
[2025-11-26 22:05:36] 2025-11-26 21:04:45,678 | INFO     | . stage-out = 5 s
[2025-11-26 22:05:36] 2025-11-26 21:04:45,679 | INFO     | . log creation = 2 s
[2025-11-26 22:05:36] 2025-11-26 21:04:45,679 | INFO     | ..............................
[2025-11-26 22:05:36] 2025-11-26 21:04:45,826 | INFO     | 
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | job summary report
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | --------------------------------------------------
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | PanDA job id: 6895331919
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | task id: 47556137
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | errors: (none)
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | pilot state: finished 
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | transexitcode: 0
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | exeerrorcode: 0
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | exeerrordiag: 
[2025-11-26 22:05:36] 2025-11-26 21:04:45,827 | INFO     | exitcode: 0
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | exitmsg: OK
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | cpuconsumptiontime: 323850 s
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | nevents: 1000
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | neventsw: 0
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | pid: 20829
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | pgrp: 20829
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | corecount: 8
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | event service: False
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | sizes: {0: 2284087, 1: 2284342, 2: 2284342, 13: 2284370, 23: 2284426, 34: 2284454, 45: 2284610, 56: 2284638, 66: 2284666, 77: 2284694, 88: 2284750, 95: 2285320, 99
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | --------------------------------------------------
[2025-11-26 22:05:36] 2025-11-26 21:04:45,828 | INFO     | 
[2025-11-26 22:05:36] 2025-11-26 21:04:45,829 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-26 22:05:36] 2025-11-26 21:04:46,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,426 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,426 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,426 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,426 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:05:36] 2025-11-26 21:04:46,427 | INFO     | job 6895331919 has completed (purged errors)
[2025-11-26 22:05:36] 2025-11-26 21:04:46,428 | INFO     | overall cleanup function is called
[2025-11-26 22:05:36] 2025-11-26 21:04:47,443 | INFO     | --- collectZombieJob: --- 10, [20829]
[2025-11-26 22:05:36] 2025-11-26 21:04:47,443 | INFO     | zombie collector waiting for pid 20829
[2025-11-26 22:05:36] 2025-11-26 21:04:47,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:05:36] 2025-11-26 21:04:47,444 | INFO     | collected zombie processes
[2025-11-26 22:05:36] 2025-11-26 21:04:47,444 | INFO     | will attempt to kill all subprocesses of pid=20829
[2025-11-26 22:05:36] 2025-11-26 21:04:47,538 | INFO     | process IDs to be killed: [20829] (in reverse order)
[2025-11-26 22:05:36] 2025-11-26 21:04:47,720 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:05:36] 2025-11-26 21:04:47,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:05:36] 2025-11-26 21:04:47,723 | INFO     | did not find any defunct processes belonging to 20829
[2025-11-26 22:05:36] 2025-11-26 21:04:47,726 | INFO     | did not find any defunct processes belonging to 20829
[2025-11-26 22:05:36] 2025-11-26 21:04:47,728 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:05:36] 2025-11-26 21:04:47,728 | INFO     | ready for new job
[2025-11-26 22:05:36] 2025-11-26 21:04:47,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:05:36] 2025-11-26 21:04:47,734 | INFO     | ***************************************
[2025-11-26 22:05:36] 2025-11-26 21:04:47,734 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:05:36] 2025-11-26 21:04:47,734 | INFO     | ***************************************
[2025-11-26 22:05:36] 2025-11-26 21:04:47,735 | INFO     | 
[2025-11-26 22:05:36] 2025-11-26 21:04:47,735 | INFO     | pilot is running in a VM
[2025-11-26 22:05:36] 2025-11-26 21:04:47,735 | INFO     | architecture information:
[2025-11-26 22:05:36] 2025-11-26 21:04:47,736 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:05:36] 2025-11-26 21:04:47,767 | INFO     | cat /etc/os-release:
[2025-11-26 22:05:36] NAME="CentOS Linux"
[2025-11-26 22:05:36] VERSION="7 (Core)"
[2025-11-26 22:05:36] ID="centos"
[2025-11-26 22:05:36] ID_LIKE="rhel fedora"
[2025-11-26 22:05:36] VERSION_ID="7"
[2025-11-26 22:05:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:05:36] ANSI_COLOR="0;31"
[2025-11-26 22:05:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:05:36] HOME_URL="https://www.centos.org/"
[2025-11-26 22:05:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:05:36] 
[2025-11-26 22:05:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:05:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:05:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:05:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:05:36] 
[2025-11-26 22:05:36] 2025-11-26 21:04:47,767 | INFO     | ***************************************
[2025-11-26 22:05:36] 2025-11-26 21:04:48,270 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-26 22:05:36] 2025-11-26 21:04:48,293 | INFO     | sufficient remaining disk space (495673409536 B)
[2025-11-26 22:05:36] 2025-11-26 21:04:48,293 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:05:36] 2025-11-26 21:04:48,293 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:05:36] 2025-11-26 21:04:48,293 | INFO     | update_server=False
[2025-11-26 22:05:36] 2025-11-26 21:04:48,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:05:36] 2025-11-26 21:04:48,294 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:05:36] 2025-11-26 21:04:48,294 | INFO     | aborting loop
[2025-11-26 22:05:36] 2025-11-26 21:04:48,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:05:36] 2025-11-26 21:04:48,368 | INFO     | all data control threads have been joined
[2025-11-26 22:05:36] 2025-11-26 21:04:49,299 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:49,300 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:49,374 | INFO     | [data] control thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:49,459 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:49,494 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:49,530 | INFO     | all job control threads have been joined
[2025-11-26 22:05:36] 2025-11-26 21:04:49,548 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:49,710 | INFO     | all payload control threads have been joined
[2025-11-26 22:05:36] 2025-11-26 21:04:49,728 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:49,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:05:36] 2025-11-26 21:04:49,800 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:49,851 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:50,302 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:50,333 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:50,536 | INFO     | [job] control thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:50,716 | INFO     | [payload] control thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:50,732 | INFO     | [job] validate thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:50,841 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:05:36] 2025-11-26 21:04:51,848 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:04:53,770 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:05:36] 2025-11-26 21:05:17,748 | INFO     | PID=14260 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 22:05:36] 2025-11-26 21:05:17,748 | INFO     | .. there are 9 such processes running
[2025-11-26 22:05:36] 2025-11-26 21:05:17,749 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:05:36] 2025-11-26 21:05:17,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:05:36] 2025-11-26 21:05:17,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:05:36] 2025-11-26 21:05:26,304 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:05:36] 2025-11-26 21:05:27,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140336369067840)>', '<ExcThread(monitor, started 140335531403008)>']
[2025-11-26 22:05:36] 2025-11-26 21:05:27,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:05:36] 2025-11-26 21:05:27,807 | INFO     | [monitor] control thread has ended
[2025-11-26 22:05:36] 2025-11-26 21:05:32,337 | INFO     | all workflow threads have been joined
[2025-11-26 22:05:36] 2025-11-26 21:05:32,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:05:36] 2025-11-26 21:05:32,338 | INFO     | traces error code: 0
[2025-11-26 22:05:36] 2025-11-26 21:05:32,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:05:36] 2025-11-26 21:05:32,639 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:05:36] 2025-11-26 21:05:32,738 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:05:36] 2025-11-26 21:05:32,809 [wrapper] pilotpid: 14260
[2025-11-26 22:05:36] 2025-11-26 21:05:32,865 [wrapper] Pilot exit status: 0
[2025-11-26 22:05:36] 2025-11-26 21:05:33,163 [wrapper] pandaids: 6895331919
[2025-11-26 22:05:36] 2025-11-26 21:05:33,833 [wrapper] cleanup supervisor_pilot 23597 14261
[2025-11-26 22:05:36] 2025-11-26 21:05:33,871 [wrapper] Test setup, not cleaning
[2025-11-26 22:05:36] 2025-11-26 21:05:33,932 [wrapper] apfmon messages muted
[2025-11-26 22:05:36] 2025-11-26 21:05:34,006 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:05:36] 2025-11-26 21:05:34,092 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:05:36]  *** Error codes and diagnostics ***
[2025-11-26 22:05:36]     "exeErrorCode": 0,
[2025-11-26 22:05:36]     "exeErrorDiag": "",
[2025-11-26 22:05:36]     "pilotErrorCode": 0,
[2025-11-26 22:05:36]     "pilotErrorDiag": "",
[2025-11-26 22:05:36]  *** Listing of results directory ***
[2025-11-26 22:05:36] total 1330120
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc    576529 Nov 22 00:51 pilot3.tar.gz
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc      5112 Nov 22 00:55 queuedata.json
[2025-11-26 22:05:36] -rwx------. 1 boinc boinc     36292 Nov 22 00:56 runpilot2-wrapper.sh
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc       100 Nov 25 21:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:05:36] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 21:55 run_atlas
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc       105 Nov 25 21:55 job.xml
[2025-11-26 22:05:36] -rw-r--r--. 2 boinc boinc 407938930 Nov 25 21:55 EVNT.47483658._000182.pool.root.1
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc      6392 Nov 25 21:55 init_data.xml
[2025-11-26 22:05:36] -rw-r--r--. 2 boinc boinc     15847 Nov 25 21:55 start_atlas.sh
[2025-11-26 22:05:36] drwxrwx--x. 2 boinc boinc        68 Nov 25 21:55 shared
[2025-11-26 22:05:36] -rw-r--r--. 2 boinc boinc    590104 Nov 25 21:55 input.tar.gz
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc         0 Nov 25 21:55 boinc_lockfile
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc      2785 Nov 25 21:55 pandaJob.out
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc    991893 Nov 25 21:59 agis_schedconf.cvmfs.json
[2025-11-26 22:05:36] drwx------. 5 boinc boinc      4096 Nov 25 21:59 pilot3
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc       533 Nov 26 21:44 boinc_task_state.xml
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc 922097230 Nov 26 22:01 HITS.47556137._001820.pool.root.1
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc      1031 Nov 26 22:02 memory_monitor_summary.json
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc   1516240 Nov 26 22:03 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc   2498096 Nov 26 22:03 log.47556137._001820.job.log.tgz.1
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc      7956 Nov 26 22:04 heartbeat.json
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc        95 Nov 26 22:05 pilot_heartbeat.json
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc      8192 Nov 26 22:05 boinc_mmap_file
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc        29 Nov 26 22:05 wrapper_checkpoint.txt
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc      4884 Nov 26 22:05 pilotlog.txt
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc  11556986 Nov 26 22:05 log.47556137._001820.job.log.1
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc       353 Nov 26 22:05 output.list
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc       620 Nov 26 22:05 runtime_log
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc  14069760 Nov 26 22:05 result.tar.gz
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc      8817 Nov 26 22:05 runtime_log.err
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc       662 Nov 26 22:05 KRcLDmNAqg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEoJKDmac4dIo.diag
[2025-11-26 22:05:36] -rw-r--r--. 1 boinc boinc     21379 Nov 26 22:05 stderr.txt
[2025-11-26 22:05:36] HITS file was successfully produced:
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc 922097230 Nov 26 22:01 shared/HITS.pool.root.1
[2025-11-26 22:05:36]  *** Contents of shared directory: ***
[2025-11-26 22:05:36] total 1313204
[2025-11-26 22:05:36] -rw-r--r--. 2 boinc boinc 407938930 Nov 25 21:55 ATLAS.root_0
[2025-11-26 22:05:36] -rw-r--r--. 2 boinc boinc     15847 Nov 25 21:55 start_atlas.sh
[2025-11-26 22:05:36] -rw-r--r--. 2 boinc boinc    590104 Nov 25 21:55 input.tar.gz
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc 922097230 Nov 26 22:01 HITS.pool.root.1
[2025-11-26 22:05:36] -rw-------. 1 boinc boinc  14069760 Nov 26 22:05 result.tar.gz
22:05:38 (10490): run_atlas exited; CPU time 324438.510651
22:05:38 (10490): called boinc_finish(0)

</stderr_txt>
]]>

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