Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:19 (4037982): wrapper (7.7.26015): starting
00:00:19 (4037982): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:00:19] Arguments: --nthreads 9
[2025-11-24 00:00:19] Threads: 9
[2025-11-24 00:00:19] Checking for CVMFS
[2025-11-24 00:00:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:00:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:00:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:00:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:00:21] 2.13.3.0 9185 26677 318428 153233 0 144 25012161 32935937 27073 16776704 0 152337270 99.782 82210186 32071 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:00:21] CVMFS is ok
[2025-11-24 00:00:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:00:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:00:21] Further information can be found at the LHC@home message board.
[2025-11-24 00:00:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:00:21] Checking for apptainer binary...
[2025-11-24 00:00:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:00:21] Running /usr/bin/apptainer --version
[2025-11-24 00:00:21] apptainer version 1.4.4-1.el9
[2025-11-24 00:00:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:00:22] c-5-6.aglt2.org
[2025-11-24 00:00:22] apptainer works
[2025-11-24 00:00:22] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:00:22] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:00:22] Starting ATLAS job with PandaID=6895339534
[2025-11-24 00:00:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:20:03 (4037982): BOINC client no longer exists - exiting
03:20:03 (4037982): timer handler: client dead, exiting
03:57:02 (541724): wrapper (7.7.26015): starting
03:57:02 (541724): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:57:02] Arguments: --nthreads 8
[2025-11-24 03:57:02] Threads: 8
[2025-11-24 03:57:02] This job has been restarted, cleaning up previous attempt
[2025-11-24 03:57:02] Checking for CVMFS
[2025-11-24 03:57:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:57:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:57:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:57:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:57:05] 2.13.3.0 9185 26914 322396 153239 0 362 28937018 32935936 28016 16776704 0 153255607 99.781 83205306 31985 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 03:57:05] CVMFS is ok
[2025-11-24 03:57:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:57:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:57:05] Further information can be found at the LHC@home message board.
[2025-11-24 03:57:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:57:05] Checking for apptainer binary...
[2025-11-24 03:57:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:57:05] Running /usr/bin/apptainer --version
[2025-11-24 03:57:05] apptainer version 1.4.4-1.el9
[2025-11-24 03:57:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:57:06] c-5-6.aglt2.org
[2025-11-24 03:57:06] apptainer works
[2025-11-24 03:57:06] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:57:06] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:57:06] Starting ATLAS job with PandaID=6895339534
[2025-11-24 03:57:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:22:14]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:22:14] 2025-11-25 07:21:29,848 | INFO     | monitor loop #5150: job 0:6895339534 is in state 'finished'
[2025-11-25 02:22:14] 2025-11-25 07:21:29,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:22:14] 2025-11-25 07:21:30,929 | INFO     | time since job start (80585s) is within the limit (172800.0s)
[2025-11-25 02:22:14] 2025-11-25 07:21:32,356 | INFO     | monitor loop #5151: job 0:6895339534 is in state 'finished'
[2025-11-25 02:22:14] 2025-11-25 07:21:32,357 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:22:14] 2025-11-25 07:21:32,935 | INFO     | time since job start (80587s) is within the limit (172800.0s)
[2025-11-25 02:22:14] 2025-11-25 07:21:34,869 | INFO     | monitor loop #5152: job 0:6895339534 is in state 'finished'
[2025-11-25 02:22:14] 2025-11-25 07:21:34,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:22:14] 2025-11-25 07:21:34,942 | INFO     | time since job start (80589s) is within the limit (172800.0s)
[2025-11-25 02:22:14] 2025-11-25 07:21:36,949 | INFO     | time since job start (80591s) is within the limit (172800.0s)
[2025-11-25 02:22:14] 2025-11-25 07:21:37,376 | INFO     | monitor loop #5153: job 0:6895339534 is in state 'finished'
[2025-11-25 02:22:14] 2025-11-25 07:21:37,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:22:14] 2025-11-25 07:21:38,687 | INFO     | PID=546241 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 02:22:14] 2025-11-25 07:21:38,688 | INFO     | .. there are 42 such processes running
[2025-11-25 02:22:14] 2025-11-25 07:21:39,689 | INFO     | time since job start (80594s) is within the limit (172800.0s)
[2025-11-25 02:22:14] 2025-11-25 07:21:39,883 | INFO     | monitor loop #5154: job 0:6895339534 is in state 'finished'
[2025-11-25 02:22:14] 2025-11-25 07:21:39,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:22:14] 2025-11-25 07:21:40,209 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:22:14] 2025-11-25 07:21:40,216 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0699499999996
[2025-11-25 02:22:14] 2025-11-25 07:21:40,223 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895339534/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:22:14] 2025-11-25 07:21:40,224 | INFO     | extracted standard info from prmon json
[2025-11-25 02:22:14] 2025-11-25 07:21:40,224 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:22:14] 2025-11-25 07:21:40,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:22:14] 2025-11-25 07:21:40,251 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:22:14] 2025-11-25 07:21:40,253 | INFO     | sum of square deviations: 711549445341.1539
[2025-11-25 02:22:14] 2025-11-25 07:21:40,308 | INFO     | sum of deviations: 4037775124815.9355
[2025-11-25 02:22:14] 2025-11-25 07:21:40,309 | INFO     | mean x: 1764015064.9052312
[2025-11-25 02:22:14] 2025-11-25 07:21:40,309 | INFO     | mean y: 2877124.39954511
[2025-11-25 02:22:14] 2025-11-25 07:21:40,309 | INFO     | intersect: -10007244021.095716
[2025-11-25 02:22:14] 2025-11-25 07:21:40,311 | INFO     | chi2: 18.934465646536186
[2025-11-25 02:22:14] 2025-11-25 07:21:40,313 | INFO     | sum of square deviations: 703488383939.5411
[2025-11-25 02:22:14] 2025-11-25 07:21:40,359 | INFO     | sum of deviations: 4509125900488.769
[2025-11-25 02:22:14] 2025-11-25 07:21:40,359 | INFO     | mean x: 1764014912.408676
[2025-11-25 02:22:14] 2025-11-25 07:21:40,360 | INFO     | mean y: 2886039.581430746
[2025-11-25 02:22:14] 2025-11-25 07:21:40,360 | INFO     | intersect: -11303861181.811184
[2025-11-25 02:22:14] 2025-11-25 07:21:40,362 | INFO     | chi2: 15.266431415248212
[2025-11-25 02:22:14] 2025-11-25 07:21:40,362 | INFO     | current chi2=15.266431415248212 (change=19.37226167224314 %)
[2025-11-25 02:22:14] 2025-11-25 07:21:40,362 | INFO     | right removable region: 1313
[2025-11-25 02:22:14] 2025-11-25 07:21:40,364 | INFO     | sum of square deviations: 703487655599.5413
[2025-11-25 02:22:14] 2025-11-25 07:21:40,421 | INFO     | sum of deviations: 3511954709199.368
[2025-11-25 02:22:14] 2025-11-25 07:21:40,421 | INFO     | mean x: 1764015217.408676
[2025-11-25 02:22:14] 2025-11-25 07:21:40,421 | INFO     | mean y: 2887070.178082192
[2025-11-25 02:22:14] 2025-11-25 07:21:40,422 | INFO     | intersect: -8803438812.822653
[2025-11-25 02:22:14] 2025-11-25 07:21:40,423 | INFO     | chi2: 14.890866212077364
[2025-11-25 02:22:14] 2025-11-25 07:21:40,423 | INFO     | current chi2=14.890866212077364 (change=21.355762079288173 %)
[2025-11-25 02:22:14] 2025-11-25 07:21:40,424 | INFO     | left removable region: 10
[2025-11-25 02:22:14] 2025-11-25 07:21:40,425 | INFO     | sum of square deviations: 685967398063.8804
[2025-11-25 02:22:14] 2025-11-25 07:21:40,476 | INFO     | sum of deviations: 3656137288029.7075
[2025-11-25 02:22:14] 2025-11-25 07:21:40,476 | INFO     | mean x: 1764015186.9163468
[2025-11-25 02:22:14] 2025-11-25 07:21:40,476 | INFO     | mean y: 2905656.107444359
[2025-11-25 02:22:14] 2025-11-25 07:21:40,476 | INFO     | intersect: -9399117996.53114
[2025-11-25 02:22:14] 2025-11-25 07:21:40,478 | INFO     | chi2: 8.134072931414709
[2025-11-25 02:22:14] 2025-11-25 07:21:40,478 | INFO     | current memory leak: 5.33 B/s (using 1303 data points, chi2=8.13)
[2025-11-25 02:22:14] 2025-11-25 07:21:40,480 | INFO     | could have reported an average CPU frequency of 2600 MHz (48 samples)
[2025-11-25 02:22:14] 2025-11-25 07:21:40,480 | INFO     | ..............................
[2025-11-25 02:22:14] 2025-11-25 07:21:40,480 | INFO     | . Timing measurements:
[2025-11-25 02:22:14] 2025-11-25 07:21:40,480 | INFO     | . get job = 0 s
[2025-11-25 02:22:14] 2025-11-25 07:21:40,480 | INFO     | . initial setup = 4 s
[2025-11-25 02:22:14] 2025-11-25 07:21:40,480 | INFO     | . payload setup = 49 s
[2025-11-25 02:22:14] 2025-11-25 07:21:40,480 | INFO     | . stage-in = 0 s
[2025-11-25 02:22:14] 2025-11-25 07:21:40,480 | INFO     | . payload execution = 80441 s
[2025-11-25 02:22:14] 2025-11-25 07:21:40,481 | INFO     | . stage-out = 4 s
[2025-11-25 02:22:14] 2025-11-25 07:21:40,481 | INFO     | . log creation = 1 s
[2025-11-25 02:22:14] 2025-11-25 07:21:40,481 | INFO     | ..............................
[2025-11-25 02:22:14] 2025-11-25 07:21:40,592 | INFO     | 
[2025-11-25 02:22:14] 2025-11-25 07:21:40,592 | INFO     | job summary report
[2025-11-25 02:22:14] 2025-11-25 07:21:40,592 | INFO     | --------------------------------------------------
[2025-11-25 02:22:14] 2025-11-25 07:21:40,592 | INFO     | PanDA job id: 6895339534
[2025-11-25 02:22:14] 2025-11-25 07:21:40,592 | INFO     | task id: 47556137
[2025-11-25 02:22:14] 2025-11-25 07:21:40,592 | INFO     | errors: (none)
[2025-11-25 02:22:14] 2025-11-25 07:21:40,592 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:22:14] 2025-11-25 07:21:40,593 | INFO     | pilot state: finished 
[2025-11-25 02:22:14] 2025-11-25 07:21:40,593 | INFO     | transexitcode: 0
[2025-11-25 02:22:14] 2025-11-25 07:21:40,593 | INFO     | exeerrorcode: 0
[2025-11-25 02:22:14] 2025-11-25 07:21:40,593 | INFO     | exeerrordiag: 
[2025-11-25 02:22:14] 2025-11-25 07:21:40,593 | INFO     | exitcode: 0
[2025-11-25 02:22:14] 2025-11-25 07:21:40,593 | INFO     | exitmsg: OK
[2025-11-25 02:22:14] 2025-11-25 07:21:40,593 | INFO     | cpuconsumptiontime: 303806 s
[2025-11-25 02:22:14] 2025-11-25 07:21:40,593 | INFO     | nevents: 1000
[2025-11-25 02:22:14] 2025-11-25 07:21:40,593 | INFO     | neventsw: 0
[2025-11-25 02:22:14] 2025-11-25 07:21:40,594 | INFO     | pid: 560277
[2025-11-25 02:22:14] 2025-11-25 07:21:40,594 | INFO     | pgrp: 560277
[2025-11-25 02:22:14] 2025-11-25 07:21:40,594 | INFO     | corecount: 8
[2025-11-25 02:22:14] 2025-11-25 07:21:40,594 | INFO     | event service: False
[2025-11-25 02:22:14] 2025-11-25 07:21:40,594 | INFO     | sizes: {0: 2297927, 1: 2298612, 2: 2298811, 13: 2298811, 24: 2298867, 35: 2298895, 38: 2299313, 46: 2299341, 80495: 2362503, 80499: 2372288, 80500: 2372344, 80515:
[2025-11-25 02:22:14] 2025-11-25 07:21:40,594 | INFO     | --------------------------------------------------
[2025-11-25 02:22:14] 2025-11-25 07:21:40,594 | INFO     | 
[2025-11-25 02:22:14] 2025-11-25 07:21:40,594 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 02:22:14] 2025-11-25 07:21:40,677 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,677 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,677 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,677 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,678 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,678 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,678 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,678 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,692 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,693 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:22:14] 2025-11-25 07:21:40,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,693 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:22:14] 2025-11-25 07:21:40,693 | INFO     | job 6895339534 has completed (purged errors)
[2025-11-25 02:22:14] 2025-11-25 07:21:40,694 | INFO     | overall cleanup function is called
[2025-11-25 02:22:14] 2025-11-25 07:21:41,737 | INFO     | --- collectZombieJob: --- 10, [560277]
[2025-11-25 02:22:14] 2025-11-25 07:21:41,737 | INFO     | zombie collector waiting for pid 560277
[2025-11-25 02:22:14] 2025-11-25 07:21:41,737 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:22:14] 2025-11-25 07:21:41,738 | INFO     | collected zombie processes
[2025-11-25 02:22:14] 2025-11-25 07:21:41,738 | INFO     | will attempt to kill all subprocesses of pid=560277
[2025-11-25 02:22:14] 2025-11-25 07:21:42,581 | INFO     | process IDs to be killed: [560277] (in reverse order)
[2025-11-25 02:22:14] 2025-11-25 07:21:42,743 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:22:14] 2025-11-25 07:21:42,743 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:22:14] 2025-11-25 07:21:42,762 | INFO     | did not find any defunct processes belonging to 560277
[2025-11-25 02:22:14] 2025-11-25 07:21:42,777 | INFO     | did not find any defunct processes belonging to 560277
[2025-11-25 02:22:14] 2025-11-25 07:21:42,796 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:22:14] 2025-11-25 07:21:42,796 | INFO     | ready for new job
[2025-11-25 02:22:14] 2025-11-25 07:21:42,796 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:22:14] 2025-11-25 07:21:42,802 | INFO     | ***************************************
[2025-11-25 02:22:14] 2025-11-25 07:21:42,802 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:22:14] 2025-11-25 07:21:42,802 | INFO     | ***************************************
[2025-11-25 02:22:14] 2025-11-25 07:21:42,802 | INFO     | 
[2025-11-25 02:22:14] 2025-11-25 07:21:42,804 | INFO     | architecture information:
[2025-11-25 02:22:14] 2025-11-25 07:21:42,804 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:22:14] 2025-11-25 07:21:42,830 | INFO     | cat /etc/os-release:
[2025-11-25 02:22:14] NAME="CentOS Linux"
[2025-11-25 02:22:14] VERSION="7 (Core)"
[2025-11-25 02:22:14] ID="centos"
[2025-11-25 02:22:14] ID_LIKE="rhel fedora"
[2025-11-25 02:22:14] VERSION_ID="7"
[2025-11-25 02:22:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:22:14] ANSI_COLOR="0;31"
[2025-11-25 02:22:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:22:14] HOME_URL="https://www.centos.org/"
[2025-11-25 02:22:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:22:14] 
[2025-11-25 02:22:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:22:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:22:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:22:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:22:14] 
[2025-11-25 02:22:14] 2025-11-25 07:21:42,830 | INFO     | ***************************************
[2025-11-25 02:22:14] 2025-11-25 07:21:43,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 02:22:14] 2025-11-25 07:21:43,355 | INFO     | sufficient remaining disk space (70925680640 B)
[2025-11-25 02:22:14] 2025-11-25 07:21:43,355 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:22:14] 2025-11-25 07:21:43,356 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:22:14] 2025-11-25 07:21:43,356 | INFO     | update_server=False
[2025-11-25 02:22:14] 2025-11-25 07:21:43,356 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:22:14] 2025-11-25 07:21:43,361 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:22:14] 2025-11-25 07:21:43,397 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:22:14] 2025-11-25 07:21:43,398 | INFO     | aborting loop
[2025-11-25 02:22:14] 2025-11-25 07:21:44,036 | INFO     | all data control threads have been joined
[2025-11-25 02:22:14] 2025-11-25 07:21:44,363 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:44,403 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:44,487 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:44,657 | INFO     | all job control threads have been joined
[2025-11-25 02:22:14] 2025-11-25 07:21:44,754 | INFO     | all payload control threads have been joined
[2025-11-25 02:22:14] 2025-11-25 07:21:44,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:22:14] 2025-11-25 07:21:45,042 | INFO     | [data] control thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,053 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,068 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,110 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,355 | INFO     | [job] validate thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,377 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,497 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:22:14] 2025-11-25 07:21:45,664 | INFO     | [job] control thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,759 | INFO     | [payload] control thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,865 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:45,881 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:46,333 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:22:14] 2025-11-25 07:21:46,614 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:48,914 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:22:14] 2025-11-25 07:21:50,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287048877888)>', '<ExcThread(monitor, started 140286147671808)>']
[2025-11-25 02:22:14] 2025-11-25 07:21:55,413 | INFO     | all workflow threads have been joined
[2025-11-25 02:22:14] 2025-11-25 07:21:55,414 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:22:14] 2025-11-25 07:21:55,414 | INFO     | traces error code: 0
[2025-11-25 02:22:14] 2025-11-25 07:21:55,414 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:22:14] 2025-11-25 07:22:13,527 | INFO     | PID=546241 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 02:22:14] 2025-11-25 07:22:13,527 | INFO     | .. there are 42 such processes running
[2025-11-25 02:22:14] 2025-11-25 07:22:13,528 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:22:14] 2025-11-25 07:22:13,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:22:14] 2025-11-25 07:22:13,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:22:14] 2025-11-25 07:22:13,528 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:22:14] 2025-11-25 07:22:13,529 | INFO     | [monitor] control thread has ended
[2025-11-25 02:22:14] 2025-11-25 07:22:13,980 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:22:14] 2025-11-25 07:22:14,006 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:22:14] 2025-11-25 07:22:14,020 [wrapper] pilotpid: 546241
[2025-11-25 02:22:14] 2025-11-25 07:22:14,035 [wrapper] Pilot exit status: 0
[2025-11-25 02:22:14] 2025-11-25 07:22:14,102 [wrapper] pandaids: 6895339534 6895339534
[2025-11-25 02:22:14] 2025-11-25 07:22:14,274 [wrapper] cleanup supervisor_pilot  349275 546242
[2025-11-25 02:22:14] 2025-11-25 07:22:14,292 [wrapper] Test setup, not cleaning
[2025-11-25 02:22:14] 2025-11-25 07:22:14,316 [wrapper] apfmon messages muted
[2025-11-25 02:22:14] 2025-11-25 07:22:14,334 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:22:14] 2025-11-25 07:22:14,348 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:22:14]  *** Error codes and diagnostics ***
[2025-11-25 02:22:14]     "exeErrorCode": 0,
[2025-11-25 02:22:14]     "exeErrorDiag": "",
[2025-11-25 02:22:14]     "pilotErrorCode": 0,
[2025-11-25 02:22:14]     "pilotErrorDiag": "",
[2025-11-25 02:22:14]  *** Listing of results directory ***
[2025-11-25 02:22:14] total 1724056
[2025-11-25 02:22:14] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 05:20 pilot3.tar.gz
[2025-11-25 02:22:14] -rwx------. 1 boincer umatlas     36292 Nov 22 05:46 runpilot2-wrapper.sh
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 05:46 queuedata.json
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:22:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:00 run_atlas
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:00 job.xml
[2025-11-25 02:22:14] -rw-r--r--. 3 boincer umatlas 409598526 Nov 24 00:00 EVNT.47483658._000352.pool.root.1
[2025-11-25 02:22:14] -rw-r--r--. 3 boincer umatlas 409598526 Nov 24 00:00 ATLAS.root_0
[2025-11-25 02:22:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 02:22:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:00 shared
[2025-11-25 02:22:14] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 00:00 input.tar.gz
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:00 boinc_lockfile
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 03:57 pandaJob.out
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas        57 Nov 24 03:57 setup.sh.local
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas    989794 Nov 24 03:58 agis_schedconf.cvmfs.json
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas       533 Nov 25 01:54 boinc_task_state.xml
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 02:18 init_data.xml
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas 916370548 Nov 25 02:19 HITS.47556137._003483.pool.root.1
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas      1070 Nov 25 02:21 memory_monitor_summary.json
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas   1516227 Nov 25 02:21 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas   2413871 Nov 25 02:21 log.47556137._003483.job.log.tgz.1
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas      8662 Nov 25 02:21 heartbeat.json
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas        29 Nov 25 02:22 wrapper_checkpoint.txt
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas        97 Nov 25 02:22 pilot_heartbeat.json
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas       822 Nov 25 02:22 pilotlog.txt
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 02:22 boinc_mmap_file
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas  10563532 Nov 25 02:22 log.47556137._003483.job.log.1
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas       353 Nov 25 02:22 output.list
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas       620 Nov 25 02:22 runtime_log
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas  12994560 Nov 25 02:22 result.tar.gz
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas      9413 Nov 25 02:22 runtime_log.err
[2025-11-25 02:22:14] -rw-------. 1 boincer umatlas       787 Nov 25 02:22 CSfMDmOJ0g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDms4HKDm2IiGIo.diag
[2025-11-25 02:22:14] -rw-r--r--. 1 boincer umatlas     24155 Nov 25 02:22 stderr.txt
[2025-11-25 02:22:15] HITS file was successfully produced:
[2025-11-25 02:22:15] -rw-------. 1 boincer umatlas 916370548 Nov 25 02:19 shared/HITS.pool.root.1
[2025-11-25 02:22:15]  *** Contents of shared directory: ***
[2025-11-25 02:22:15] total 1308188
[2025-11-25 02:22:15] -rw-r--r--. 3 boincer umatlas 409598526 Nov 24 00:00 ATLAS.root_0
[2025-11-25 02:22:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 02:22:15] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 00:00 input.tar.gz
[2025-11-25 02:22:15] -rw-------. 1 boincer umatlas 916370548 Nov 25 02:19 HITS.pool.root.1
[2025-11-25 02:22:15] -rw-------. 1 boincer umatlas  12994560 Nov 25 02:22 result.tar.gz
02:22:16 (541724): run_atlas exited; CPU time 306588.026489
02:22:16 (541724): called boinc_finish(0)

</stderr_txt>
]]>

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