Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:04:16 (13282): wrapper (7.7.26015): starting
04:04:16 (13282): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 04:04:16] Arguments: --nthreads 8
[2025-11-26 04:04:16] Threads: 8
[2025-11-26 04:04:16] Checking for CVMFS
[2025-11-26 04:04:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 04:04:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 04:04:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 04:04:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 04:04:18] 2.11.2.0 2066 88099 98704 153305 1 85 14158711 25165824 1706 130560 12 24092190 99.899 12949799 1759 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 04:04:18] CVMFS is ok
[2025-11-26 04:04:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 04:04:18] Checking for apptainer binary...
[2025-11-26 04:04:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 04:04:18] Running /usr/bin/apptainer --version
[2025-11-26 04:04:18] apptainer version 1.3.2-1.el7
[2025-11-26 04:04:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 04:04:25] cg-vwn446.simple-grid.lan
[2025-11-26 04:04:25] apptainer works
[2025-11-26 04:04:25] Set ATHENA_PROC_NUMBER=8
[2025-11-26 04:04:25] Set ATHENA_CORE_NUMBER=8
[2025-11-26 04:04:25] Starting ATLAS job with PandaID=6893876904
[2025-11-26 04:04:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:36:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:36:08] 2025-11-27 02:35:05,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:36:08] 2025-11-27 02:35:07,049 | INFO     | time since job start (84395s) is within the limit (172800.0s)
[2025-11-27 03:36:08] 2025-11-27 02:35:07,593 | INFO     | monitor loop #5691: job 0:6893876904 is in state 'finished'
[2025-11-27 03:36:08] 2025-11-27 02:35:07,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:36:08] 2025-11-27 02:35:08,193 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:36:08] 2025-11-27 02:35:08,194 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 03:36:08] 2025-11-27 02:35:08,196 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893876904/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:36:08] 2025-11-27 02:35:08,196 | INFO     | extracted standard info from prmon json
[2025-11-27 03:36:08] 2025-11-27 02:35:08,197 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:36:08] 2025-11-27 02:35:08,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:36:08] 2025-11-27 02:35:08,236 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:36:08] 2025-11-27 02:35:08,238 | INFO     | sum of square deviations: 804337371717.0297
[2025-11-27 03:36:08] 2025-11-27 02:35:08,314 | INFO     | sum of deviations: 3395237335146.929
[2025-11-27 03:36:08] 2025-11-27 02:35:08,315 | INFO     | mean x: 1764168909.6026201
[2025-11-27 03:36:08] 2025-11-27 02:35:08,315 | INFO     | mean y: 2844575.465065502
[2025-11-27 03:36:08] 2025-11-27 02:35:08,315 | INFO     | intersect: -7443995964.347001
[2025-11-27 03:36:08] 2025-11-27 02:35:08,316 | INFO     | chi2: 19.771870247162546
[2025-11-27 03:36:08] 2025-11-27 02:35:08,318 | INFO     | sum of square deviations: 795588767418.4296
[2025-11-27 03:36:08] 2025-11-27 02:35:08,398 | INFO     | sum of deviations: 3850865726408.751
[2025-11-27 03:36:08] 2025-11-27 02:35:08,398 | INFO     | mean x: 1764168757.1066473
[2025-11-27 03:36:08] 2025-11-27 02:35:08,398 | INFO     | mean y: 2852516.2140248357
[2025-11-27 03:36:08] 2025-11-27 02:35:08,398 | INFO     | intersect: -8536203439.021853
[2025-11-27 03:36:08] 2025-11-27 02:35:08,400 | INFO     | chi2: 16.62487502548507
[2025-11-27 03:36:08] 2025-11-27 02:35:08,400 | INFO     | current chi2=16.62487502548507 (change=15.916527785878523 %)
[2025-11-27 03:36:08] 2025-11-27 02:35:08,400 | INFO     | right removable region: 1368
[2025-11-27 03:36:08] 2025-11-27 02:35:08,402 | INFO     | sum of square deviations: 795587843268.4294
[2025-11-27 03:36:08] 2025-11-27 02:35:08,463 | INFO     | sum of deviations: 2803650735610.6963
[2025-11-27 03:36:08] 2025-11-27 02:35:08,464 | INFO     | mean x: 1764169062.1066473
[2025-11-27 03:36:08] 2025-11-27 02:35:08,464 | INFO     | mean y: 2854886.6596055515
[2025-11-27 03:36:08] 2025-11-27 02:35:08,464 | INFO     | intersect: -6214075060.883756
[2025-11-27 03:36:08] 2025-11-27 02:35:08,465 | INFO     | chi2: 14.775567309983193
[2025-11-27 03:36:08] 2025-11-27 02:35:08,466 | INFO     | current chi2=14.775567309983193 (change=25.269753820564194 %)
[2025-11-27 03:36:08] 2025-11-27 02:35:08,467 | INFO     | sum of square deviations: 786901990432.2832
[2025-11-27 03:36:08] 2025-11-27 02:35:08,522 | INFO     | sum of deviations: 2307232503040.5903
[2025-11-27 03:36:08] 2025-11-27 02:35:08,523 | INFO     | mean x: 1764169214.6107037
[2025-11-27 03:36:08] 2025-11-27 02:35:08,523 | INFO     | mean y: 2863601.370234604
[2025-11-27 03:36:08] 2025-11-27 02:35:08,523 | INFO     | intersect: -5169760946.926266
[2025-11-27 03:36:08] 2025-11-27 02:35:08,525 | INFO     | chi2: 11.380597238149896
[2025-11-27 03:36:08] 2025-11-27 02:35:08,525 | INFO     | current chi2=11.380597238149896 (change=22.976918588699245 %)
[2025-11-27 03:36:08] 2025-11-27 02:35:08,525 | INFO     | left removable region: 20
[2025-11-27 03:36:08] 2025-11-27 02:35:08,527 | INFO     | sum of square deviations: 759534222322.2451
[2025-11-27 03:36:08] 2025-11-27 02:35:08,576 | INFO     | sum of deviations: 2415427790104.904
[2025-11-27 03:36:08] 2025-11-27 02:35:08,576 | INFO     | mean x: 1764169336.6179526
[2025-11-27 03:36:08] 2025-11-27 02:35:08,576 | INFO     | mean y: 2881482.0949554895
[2025-11-27 03:36:08] 2025-11-27 02:35:08,576 | INFO     | intersect: -5607430096.874346
[2025-11-27 03:36:08] 2025-11-27 02:35:08,578 | INFO     | chi2: 5.407581062976945
[2025-11-27 03:36:08] 2025-11-27 02:35:08,578 | INFO     | current memory leak: 3.18 B/s (using 1348 data points, chi2=5.41)
[2025-11-27 03:36:08] 2025-11-27 02:35:08,580 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 03:36:08] 2025-11-27 02:35:08,580 | INFO     | ..............................
[2025-11-27 03:36:08] 2025-11-27 02:35:08,580 | INFO     | . Timing measurements:
[2025-11-27 03:36:08] 2025-11-27 02:35:08,580 | INFO     | . get job = 0 s
[2025-11-27 03:36:08] 2025-11-27 02:35:08,580 | INFO     | . initial setup = 5 s
[2025-11-27 03:36:08] 2025-11-27 02:35:08,580 | INFO     | . payload setup = 175 s
[2025-11-27 03:36:08] 2025-11-27 02:35:08,580 | INFO     | . stage-in = 0 s
[2025-11-27 03:36:08] 2025-11-27 02:35:08,580 | INFO     | . payload execution = 83927 s
[2025-11-27 03:36:08] 2025-11-27 02:35:08,581 | INFO     | . stage-out = 5 s
[2025-11-27 03:36:08] 2025-11-27 02:35:08,581 | INFO     | . log creation = 2 s
[2025-11-27 03:36:08] 2025-11-27 02:35:08,581 | INFO     | ..............................
[2025-11-27 03:36:08] 2025-11-27 02:35:09,059 | INFO     | time since job start (84397s) is within the limit (172800.0s)
[2025-11-27 03:36:08] 2025-11-27 02:35:09,103 | INFO     | 
[2025-11-27 03:36:08] 2025-11-27 02:35:09,104 | INFO     | job summary report
[2025-11-27 03:36:08] 2025-11-27 02:35:09,104 | INFO     | --------------------------------------------------
[2025-11-27 03:36:08] 2025-11-27 02:35:09,104 | INFO     | PanDA job id: 6893876904
[2025-11-27 03:36:08] 2025-11-27 02:35:09,104 | INFO     | task id: 47523449
[2025-11-27 03:36:08] 2025-11-27 02:35:09,104 | INFO     | errors: (none)
[2025-11-27 03:36:08] 2025-11-27 02:35:09,104 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:36:08] 2025-11-27 02:35:09,104 | INFO     | pilot state: finished 
[2025-11-27 03:36:08] 2025-11-27 02:35:09,104 | INFO     | transexitcode: 0
[2025-11-27 03:36:08] 2025-11-27 02:35:09,104 | INFO     | exeerrorcode: 0
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | exeerrordiag: 
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | exitcode: 0
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | exitmsg: OK
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | cpuconsumptiontime: 316804 s
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | nevents: 1000
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | neventsw: 0
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | pid: 23678
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | pgrp: 23678
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | corecount: 8
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | event service: False
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | sizes: {0: 2284037, 1: 2284292, 12: 2284292, 23: 2284320, 34: 2284348, 44: 2284376, 55: 2284532, 66: 2284560, 76: 2284588, 87: 2284644, 92: 2284934, 98: 2285242, 8
[2025-11-27 03:36:08] 2025-11-27 02:35:09,105 | INFO     | --------------------------------------------------
[2025-11-27 03:36:08] 2025-11-27 02:35:09,106 | INFO     | 
[2025-11-27 03:36:08] 2025-11-27 02:35:09,106 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-27 03:36:08] 2025-11-27 02:35:09,599 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,599 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,600 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,600 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,600 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,600 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,600 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,600 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:36:08] 2025-11-27 02:35:09,602 | INFO     | job 6893876904 has completed (purged errors)
[2025-11-27 03:36:08] 2025-11-27 02:35:09,602 | INFO     | overall cleanup function is called
[2025-11-27 03:36:08] 2025-11-27 02:35:10,193 | INFO     | PID=17079 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 03:36:08] 2025-11-27 02:35:10,193 | INFO     | .. there are 9 such processes running
[2025-11-27 03:36:08] 2025-11-27 02:35:10,621 | INFO     | --- collectZombieJob: --- 10, [23678]
[2025-11-27 03:36:08] 2025-11-27 02:35:10,622 | INFO     | zombie collector waiting for pid 23678
[2025-11-27 03:36:08] 2025-11-27 02:35:10,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:36:08] 2025-11-27 02:35:10,622 | INFO     | collected zombie processes
[2025-11-27 03:36:08] 2025-11-27 02:35:10,622 | INFO     | will attempt to kill all subprocesses of pid=23678
[2025-11-27 03:36:08] 2025-11-27 02:35:10,731 | INFO     | process IDs to be killed: [23678] (in reverse order)
[2025-11-27 03:36:08] 2025-11-27 02:35:11,396 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:36:08] 2025-11-27 02:35:11,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:36:08] 2025-11-27 02:35:11,399 | INFO     | did not find any defunct processes belonging to 23678
[2025-11-27 03:36:08] 2025-11-27 02:35:11,402 | INFO     | did not find any defunct processes belonging to 23678
[2025-11-27 03:36:08] 2025-11-27 02:35:11,442 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:36:08] 2025-11-27 02:35:11,442 | INFO     | ready for new job
[2025-11-27 03:36:08] 2025-11-27 02:35:11,442 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:36:08] 2025-11-27 02:35:11,447 | INFO     | ***************************************
[2025-11-27 03:36:08] 2025-11-27 02:35:11,447 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:36:08] 2025-11-27 02:35:11,448 | INFO     | ***************************************
[2025-11-27 03:36:08] 2025-11-27 02:35:11,448 | INFO     | 
[2025-11-27 03:36:08] 2025-11-27 02:35:11,448 | INFO     | pilot is running in a VM
[2025-11-27 03:36:08] 2025-11-27 02:35:11,448 | INFO     | architecture information:
[2025-11-27 03:36:08] 2025-11-27 02:35:11,456 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:36:08] 2025-11-27 02:35:11,701 | INFO     | cat /etc/os-release:
[2025-11-27 03:36:08] NAME="CentOS Linux"
[2025-11-27 03:36:08] VERSION="7 (Core)"
[2025-11-27 03:36:08] ID="centos"
[2025-11-27 03:36:08] ID_LIKE="rhel fedora"
[2025-11-27 03:36:08] VERSION_ID="7"
[2025-11-27 03:36:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:36:08] ANSI_COLOR="0;31"
[2025-11-27 03:36:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:36:08] HOME_URL="https://www.centos.org/"
[2025-11-27 03:36:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:36:08] 
[2025-11-27 03:36:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:36:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:36:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:36:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:36:08] 
[2025-11-27 03:36:08] 2025-11-27 02:35:11,701 | INFO     | ***************************************
[2025-11-27 03:36:08] 2025-11-27 02:35:12,205 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-27 03:36:08] 2025-11-27 02:35:12,378 | INFO     | sufficient remaining disk space (495186870272 B)
[2025-11-27 03:36:08] 2025-11-27 02:35:12,379 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:36:08] 2025-11-27 02:35:12,379 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:36:08] 2025-11-27 02:35:12,379 | INFO     | update_server=False
[2025-11-27 03:36:08] 2025-11-27 02:35:12,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:36:08] 2025-11-27 02:35:12,621 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 03:36:08] 2025-11-27 02:35:12,622 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 03:36:08] 2025-11-27 02:35:12,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:36:08] 2025-11-27 02:35:12,622 | INFO     | will abort loop
[2025-11-27 03:36:08] 2025-11-27 02:35:12,738 | INFO     | all data control threads have been joined
[2025-11-27 03:36:08] 2025-11-27 02:35:13,302 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:36:08] 2025-11-27 02:35:13,385 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:13,395 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:13,409 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:13,482 | INFO     | all payload control threads have been joined
[2025-11-27 03:36:08] 2025-11-27 02:35:13,548 | INFO     | all job control threads have been joined
[2025-11-27 03:36:08] 2025-11-27 02:35:13,628 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:13,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:36:08] 2025-11-27 02:35:13,745 | INFO     | [data] control thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:13,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:36:08] 2025-11-27 02:35:13,900 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:13,957 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:14,037 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:14,489 | INFO     | [payload] control thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:14,530 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:14,550 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:14,555 | INFO     | [job] control thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:14,749 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:14,857 | INFO     | [job] validate thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:15,811 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:17,311 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:36:08] 2025-11-27 02:35:42,398 | INFO     | PID=17079 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 03:36:08] 2025-11-27 02:35:42,398 | INFO     | .. there are 9 such processes running
[2025-11-27 03:36:08] 2025-11-27 02:35:42,399 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:36:08] 2025-11-27 02:35:42,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:36:08] 2025-11-27 02:35:42,399 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:36:08] 2025-11-27 02:35:59,247 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:36:08] 2025-11-27 02:35:59,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139804141643584)>', '<ExcThread(monitor, started 139803685263104)>']
[2025-11-27 03:36:08] 2025-11-27 02:35:59,500 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:36:08] 2025-11-27 02:35:59,501 | INFO     | [monitor] control thread has ended
[2025-11-27 03:36:08] 2025-11-27 02:36:04,451 | INFO     | all workflow threads have been joined
[2025-11-27 03:36:08] 2025-11-27 02:36:04,452 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:36:08] 2025-11-27 02:36:04,452 | INFO     | traces error code: 0
[2025-11-27 03:36:08] 2025-11-27 02:36:04,452 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:36:08] 2025-11-27 02:36:04,739 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:36:08] 2025-11-27 02:36:04,849 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:36:08] 2025-11-27 02:36:04,943 [wrapper] pilotpid: 17079
[2025-11-27 03:36:08] 2025-11-27 02:36:04,991 [wrapper] Pilot exit status: 0
[2025-11-27 03:36:08] 2025-11-27 02:36:05,326 [wrapper] pandaids: 6893876904
[2025-11-27 03:36:08] 2025-11-27 02:36:05,907 [wrapper] cleanup supervisor_pilot  8999 17080
[2025-11-27 03:36:08] 2025-11-27 02:36:05,958 [wrapper] Test setup, not cleaning
[2025-11-27 03:36:08] 2025-11-27 02:36:06,045 [wrapper] apfmon messages muted
[2025-11-27 03:36:08] 2025-11-27 02:36:06,148 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:36:08] 2025-11-27 02:36:06,233 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:36:08]  *** Error codes and diagnostics ***
[2025-11-27 03:36:08]     "exeErrorCode": 0,
[2025-11-27 03:36:08]     "exeErrorDiag": "",
[2025-11-27 03:36:08]     "pilotErrorCode": 0,
[2025-11-27 03:36:08]     "pilotErrorDiag": "",
[2025-11-27 03:36:08]  *** Listing of results directory ***
[2025-11-27 03:36:08] total 1342248
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc    576529 Nov 20 18:52 pilot3.tar.gz
[2025-11-27 03:36:08] -rwx------. 1 boinc boinc     36292 Nov 20 19:01 runpilot2-wrapper.sh
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc      5112 Nov 20 19:01 queuedata.json
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc       100 Nov 26 04:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:36:08] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 04:04 run_atlas
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc       105 Nov 26 04:04 job.xml
[2025-11-27 03:36:08] -rw-r--r--. 2 boinc boinc 411336748 Nov 26 04:04 EVNT.47493127._000783.pool.root.1
[2025-11-27 03:36:08] drwxrwx--x. 2 boinc boinc        68 Nov 26 04:04 shared
[2025-11-27 03:36:08] -rw-r--r--. 2 boinc boinc    590098 Nov 26 04:04 input.tar.gz
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc      6393 Nov 26 04:04 init_data.xml
[2025-11-27 03:36:08] -rw-r--r--. 2 boinc boinc     15847 Nov 26 04:04 start_atlas.sh
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc         0 Nov 26 04:04 boinc_lockfile
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc      2785 Nov 26 04:04 pandaJob.out
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc    991877 Nov 26 04:08 agis_schedconf.cvmfs.json
[2025-11-27 03:36:08] drwx------. 5 boinc boinc      4096 Nov 26 04:08 pilot3
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc       533 Nov 27 03:13 boinc_task_state.xml
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc 931839041 Nov 27 03:32 HITS.47523449._007822.pool.root.1
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc      1029 Nov 27 03:33 memory_monitor_summary.json
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc   1516240 Nov 27 03:33 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc   2448882 Nov 27 03:33 log.47523449._007822.job.log.tgz.1
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc      7940 Nov 27 03:35 heartbeat.json
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc        95 Nov 27 03:35 pilot_heartbeat.json
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc      8192 Nov 27 03:35 boinc_mmap_file
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc        29 Nov 27 03:35 wrapper_checkpoint.txt
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc      5070 Nov 27 03:36 pilotlog.txt
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc  11243345 Nov 27 03:36 log.47523449._007822.job.log.1
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc       353 Nov 27 03:36 output.list
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc       620 Nov 27 03:36 runtime_log
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc  13711360 Nov 27 03:36 result.tar.gz
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc      8817 Nov 27 03:36 runtime_log.err
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc       662 Nov 27 03:36 foyMDmd9Ng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZwGKDm9Li7Kn.diag
[2025-11-27 03:36:08] -rw-r--r--. 1 boinc boinc     21276 Nov 27 03:36 stderr.txt
[2025-11-27 03:36:08] HITS file was successfully produced:
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc 931839041 Nov 27 03:32 shared/HITS.pool.root.1
[2025-11-27 03:36:08]  *** Contents of shared directory: ***
[2025-11-27 03:36:08] total 1325688
[2025-11-27 03:36:08] -rw-r--r--. 2 boinc boinc 411336748 Nov 26 04:04 ATLAS.root_0
[2025-11-27 03:36:08] -rw-r--r--. 2 boinc boinc    590098 Nov 26 04:04 input.tar.gz
[2025-11-27 03:36:08] -rw-r--r--. 2 boinc boinc     15847 Nov 26 04:04 start_atlas.sh
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc 931839041 Nov 27 03:32 HITS.pool.root.1
[2025-11-27 03:36:08] -rw-------. 1 boinc boinc  13711360 Nov 27 03:36 result.tar.gz
03:36:10 (13282): run_atlas exited; CPU time 317382.695295
03:36:10 (13282): called boinc_finish(0)

</stderr_txt>
]]>

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