Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:28:16 (10006): wrapper (7.7.26015): starting
13:28:16 (10006): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 13:28:16] Arguments: --nthreads 8
[2025-11-25 13:28:16] Threads: 8
[2025-11-25 13:28:16] Checking for CVMFS
[2025-11-25 13:28:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:28:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:28:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:28:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:28:20] 2.11.2.0 14372 283756 135896 153281 3 60 15580428 25165824 1027 130560 10 136990488 99.881 82262232 2866 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 13:28:20] CVMFS is ok
[2025-11-25 13:28:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:28:20] Checking for apptainer binary...
[2025-11-25 13:28:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:28:20] Running /usr/bin/apptainer --version
[2025-11-25 13:28:20] apptainer version 1.3.2-1.el7
[2025-11-25 13:28:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:28:37] cg-vwn440.simple-grid.lan
[2025-11-25 13:28:37] apptainer works
[2025-11-25 13:28:37] Set ATHENA_PROC_NUMBER=8
[2025-11-25 13:28:37] Set ATHENA_CORE_NUMBER=8
[2025-11-25 13:28:37] Starting ATLAS job with PandaID=6895339645
[2025-11-25 13:28:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/31 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:35:15]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:35:15] 2025-11-26 11:34:27,133 | INFO     | time since job start (82908s) is within the limit (172800.0s)
[2025-11-26 12:35:15] 2025-11-26 11:34:28,280 | INFO     | PID=13729 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 12:35:15] 2025-11-26 11:34:28,280 | INFO     | .. there are 2 such processes running
[2025-11-26 12:35:15] 2025-11-26 11:34:28,510 | INFO     | monitor loop #5638: job 0:6895339645 is in state 'finished'
[2025-11-26 12:35:15] 2025-11-26 11:34:28,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:35:15] 2025-11-26 11:34:29,281 | INFO     | time since job start (82910s) is within the limit (172800.0s)
[2025-11-26 12:35:15] 2025-11-26 11:34:31,023 | INFO     | monitor loop #5639: job 0:6895339645 is in state 'finished'
[2025-11-26 12:35:15] 2025-11-26 11:34:31,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:35:15] 2025-11-26 11:34:31,294 | INFO     | time since job start (82912s) is within the limit (172800.0s)
[2025-11-26 12:35:15] 2025-11-26 11:34:33,305 | INFO     | time since job start (82914s) is within the limit (172800.0s)
[2025-11-26 12:35:15] 2025-11-26 11:34:33,532 | INFO     | monitor loop #5640: job 0:6895339645 is in state 'finished'
[2025-11-26 12:35:15] 2025-11-26 11:34:33,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:35:15] 2025-11-26 11:34:35,311 | INFO     | time since job start (82916s) is within the limit (172800.0s)
[2025-11-26 12:35:15] 2025-11-26 11:34:36,041 | INFO     | monitor loop #5641: job 0:6895339645 is in state 'finished'
[2025-11-26 12:35:15] 2025-11-26 11:34:36,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:35:15] 2025-11-26 11:34:37,239 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 12:35:15] 2025-11-26 11:34:37,242 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 12:35:15] 2025-11-26 11:34:37,244 | INFO     | using path: /var/lib/boinc/slots/31/PanDA_Pilot-6895339645/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 12:35:15] 2025-11-26 11:34:37,245 | INFO     | extracted standard info from prmon json
[2025-11-26 12:35:15] 2025-11-26 11:34:37,245 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 12:35:15] 2025-11-26 11:34:37,245 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 12:35:15] 2025-11-26 11:34:37,271 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:35:15] 2025-11-26 11:34:37,273 | INFO     | sum of square deviations: 761218344359.0428
[2025-11-26 12:35:15] 2025-11-26 11:34:37,333 | INFO     | sum of deviations: 3067541401765.7886
[2025-11-26 12:35:15] 2025-11-26 11:34:37,333 | INFO     | mean x: 1764115625.0941439
[2025-11-26 12:35:15] 2025-11-26 11:34:37,333 | INFO     | mean y: 2790357.9859154928
[2025-11-26 12:35:15] 2025-11-26 11:34:37,333 | INFO     | intersect: -7106205053.882124
[2025-11-26 12:35:15] 2025-11-26 11:34:37,335 | INFO     | chi2: 38.170539167419
[2025-11-26 12:35:15] 2025-11-26 11:34:37,337 | INFO     | sum of square deviations: 752785780603.0358
[2025-11-26 12:35:15] 2025-11-26 11:34:37,366 | INFO     | time since job start (82918s) is within the limit (172800.0s)
[2025-11-26 12:35:15] 2025-11-26 11:34:37,407 | INFO     | sum of deviations: 3497154078122.0117
[2025-11-26 12:35:15] 2025-11-26 11:34:37,407 | INFO     | mean x: 1764115472.5982144
[2025-11-26 12:35:15] 2025-11-26 11:34:37,407 | INFO     | mean y: 2798126.003720238
[2025-11-26 12:35:15] 2025-11-26 11:34:37,407 | INFO     | intersect: -8192605902.925816
[2025-11-26 12:35:15] 2025-11-26 11:34:37,409 | INFO     | chi2: 34.95636217920471
[2025-11-26 12:35:15] 2025-11-26 11:34:37,409 | INFO     | current chi2=34.95636217920471 (change=8.420570047796959 %)
[2025-11-26 12:35:15] 2025-11-26 11:34:37,409 | INFO     | right removable region: 1343
[2025-11-26 12:35:15] 2025-11-26 11:34:37,411 | INFO     | sum of square deviations: 752784880243.0365
[2025-11-26 12:35:15] 2025-11-26 11:34:37,471 | INFO     | sum of deviations: 2495312640747.4966
[2025-11-26 12:35:15] 2025-11-26 11:34:37,471 | INFO     | mean x: 1764115777.5982144
[2025-11-26 12:35:15] 2025-11-26 11:34:37,471 | INFO     | mean y: 2800705.7083333335
[2025-11-26 12:35:15] 2025-11-26 11:34:37,471 | INFO     | intersect: -5844846497.516221
[2025-11-26 12:35:15] 2025-11-26 11:34:37,473 | INFO     | chi2: 33.08282057759625
[2025-11-26 12:35:15] 2025-11-26 11:34:37,473 | INFO     | current chi2=33.08282057759625 (change=13.328914657211453 %)
[2025-11-26 12:35:15] 2025-11-26 11:34:37,473 | INFO     | left removable region: 10
[2025-11-26 12:35:15] 2025-11-26 11:34:37,475 | INFO     | sum of square deviations: 734452057227.665
[2025-11-26 12:35:15] 2025-11-26 11:34:37,529 | INFO     | sum of deviations: 2487885518614.248
[2025-11-26 12:35:15] 2025-11-26 11:34:37,532 | INFO     | mean x: 1764115747.107277
[2025-11-26 12:35:15] 2025-11-26 11:34:37,533 | INFO     | mean y: 2820045.8304576143
[2025-11-26 12:35:15] 2025-11-26 11:34:37,533 | INFO     | intersect: -5972951928.931776
[2025-11-26 12:35:15] 2025-11-26 11:34:37,534 | INFO     | chi2: 24.772428838163286
[2025-11-26 12:35:15] 2025-11-26 11:34:37,535 | INFO     | current memory leak: 3.39 B/s (using 1333 data points, chi2=24.77)
[2025-11-26 12:35:15] 2025-11-26 11:34:37,536 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-26 12:35:15] 2025-11-26 11:34:37,536 | INFO     | ..............................
[2025-11-26 12:35:15] 2025-11-26 11:34:37,536 | INFO     | . Timing measurements:
[2025-11-26 12:35:15] 2025-11-26 11:34:37,536 | INFO     | . get job = 0 s
[2025-11-26 12:35:15] 2025-11-26 11:34:37,536 | INFO     | . initial setup = 11 s
[2025-11-26 12:35:15] 2025-11-26 11:34:37,537 | INFO     | . payload setup = 192 s
[2025-11-26 12:35:15] 2025-11-26 11:34:37,537 | INFO     | . stage-in = 0 s
[2025-11-26 12:35:15] 2025-11-26 11:34:37,537 | INFO     | . payload execution = 82398 s
[2025-11-26 12:35:15] 2025-11-26 11:34:37,537 | INFO     | . stage-out = 6 s
[2025-11-26 12:35:15] 2025-11-26 11:34:37,537 | INFO     | . log creation = 2 s
[2025-11-26 12:35:15] 2025-11-26 11:34:37,537 | INFO     | ..............................
[2025-11-26 12:35:15] 2025-11-26 11:34:38,109 | INFO     | 
[2025-11-26 12:35:15] 2025-11-26 11:34:38,109 | INFO     | job summary report
[2025-11-26 12:35:15] 2025-11-26 11:34:38,110 | INFO     | --------------------------------------------------
[2025-11-26 12:35:15] 2025-11-26 11:34:38,110 | INFO     | PanDA job id: 6895339645
[2025-11-26 12:35:15] 2025-11-26 11:34:38,110 | INFO     | task id: 47556137
[2025-11-26 12:35:15] 2025-11-26 11:34:38,110 | INFO     | errors: (none)
[2025-11-26 12:35:15] 2025-11-26 11:34:38,110 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:35:15] 2025-11-26 11:34:38,110 | INFO     | pilot state: finished 
[2025-11-26 12:35:15] 2025-11-26 11:34:38,110 | INFO     | transexitcode: 0
[2025-11-26 12:35:15] 2025-11-26 11:34:38,110 | INFO     | exeerrorcode: 0
[2025-11-26 12:35:15] 2025-11-26 11:34:38,110 | INFO     | exeerrordiag: 
[2025-11-26 12:35:15] 2025-11-26 11:34:38,111 | INFO     | exitcode: 0
[2025-11-26 12:35:15] 2025-11-26 11:34:38,111 | INFO     | exitmsg: OK
[2025-11-26 12:35:15] 2025-11-26 11:34:38,111 | INFO     | cpuconsumptiontime: 339924 s
[2025-11-26 12:35:15] 2025-11-26 11:34:38,111 | INFO     | nevents: 1000
[2025-11-26 12:35:15] 2025-11-26 11:34:38,111 | INFO     | neventsw: 0
[2025-11-26 12:35:15] 2025-11-26 11:34:38,111 | INFO     | pid: 20229
[2025-11-26 12:35:15] 2025-11-26 11:34:38,111 | INFO     | pgrp: 20229
[2025-11-26 12:35:15] 2025-11-26 11:34:38,111 | INFO     | corecount: 8
[2025-11-26 12:35:15] 2025-11-26 11:34:38,111 | INFO     | event service: False
[2025-11-26 12:35:15] 2025-11-26 11:34:38,112 | INFO     | sizes: {0: 2283987, 1: 2284242, 2: 2284270, 12: 2284270, 23: 2284298, 34: 2284326, 45: 2284482, 55: 2284510, 66: 2284538, 77: 2284566, 88: 2284622, 98: 2284930, 10
[2025-11-26 12:35:15] 2025-11-26 11:34:38,112 | INFO     | --------------------------------------------------
[2025-11-26 12:35:15] 2025-11-26 11:34:38,112 | INFO     | 
[2025-11-26 12:35:15] 2025-11-26 11:34:38,112 | INFO     | executing command: ls -lF /var/lib/boinc/slots/31
[2025-11-26 12:35:15] 2025-11-26 11:34:38,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,514 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,514 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,514 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,514 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,514 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,514 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,514 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,514 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,515 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:35:15] 2025-11-26 11:34:38,516 | INFO     | job 6895339645 has completed (purged errors)
[2025-11-26 12:35:15] 2025-11-26 11:34:38,516 | INFO     | overall cleanup function is called
[2025-11-26 12:35:15] 2025-11-26 11:34:39,532 | INFO     | --- collectZombieJob: --- 10, [20229]
[2025-11-26 12:35:15] 2025-11-26 11:34:39,532 | INFO     | zombie collector waiting for pid 20229
[2025-11-26 12:35:15] 2025-11-26 11:34:39,533 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:35:15] 2025-11-26 11:34:39,533 | INFO     | collected zombie processes
[2025-11-26 12:35:15] 2025-11-26 11:34:39,533 | INFO     | will attempt to kill all subprocesses of pid=20229
[2025-11-26 12:35:15] 2025-11-26 11:34:39,628 | INFO     | process IDs to be killed: [20229] (in reverse order)
[2025-11-26 12:35:15] 2025-11-26 11:34:40,804 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:35:15] 2025-11-26 11:34:40,804 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:35:15] 2025-11-26 11:34:40,806 | INFO     | did not find any defunct processes belonging to 20229
[2025-11-26 12:35:15] 2025-11-26 11:34:40,808 | INFO     | did not find any defunct processes belonging to 20229
[2025-11-26 12:35:15] 2025-11-26 11:34:40,875 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:35:15] 2025-11-26 11:34:40,876 | INFO     | ready for new job
[2025-11-26 12:35:15] 2025-11-26 11:34:40,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:35:15] 2025-11-26 11:34:40,881 | INFO     | ***************************************
[2025-11-26 12:35:15] 2025-11-26 11:34:40,881 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:35:15] 2025-11-26 11:34:40,881 | INFO     | ***************************************
[2025-11-26 12:35:15] 2025-11-26 11:34:40,881 | INFO     | 
[2025-11-26 12:35:15] 2025-11-26 11:34:40,882 | INFO     | pilot is running in a VM
[2025-11-26 12:35:15] 2025-11-26 11:34:40,882 | INFO     | architecture information:
[2025-11-26 12:35:15] 2025-11-26 11:34:40,896 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:35:15] 2025-11-26 11:34:41,165 | INFO     | cat /etc/os-release:
[2025-11-26 12:35:15] NAME="CentOS Linux"
[2025-11-26 12:35:15] VERSION="7 (Core)"
[2025-11-26 12:35:15] ID="centos"
[2025-11-26 12:35:15] ID_LIKE="rhel fedora"
[2025-11-26 12:35:15] VERSION_ID="7"
[2025-11-26 12:35:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:35:15] ANSI_COLOR="0;31"
[2025-11-26 12:35:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:35:15] HOME_URL="https://www.centos.org/"
[2025-11-26 12:35:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:35:15] 
[2025-11-26 12:35:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:35:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:35:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:35:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:35:15] 
[2025-11-26 12:35:15] 2025-11-26 11:34:41,165 | INFO     | ***************************************
[2025-11-26 12:35:15] 2025-11-26 11:34:41,667 | INFO     | executing command: df -mP /var/lib/boinc/slots/31
[2025-11-26 12:35:15] 2025-11-26 11:34:41,904 | INFO     | sufficient remaining disk space (493815332864 B)
[2025-11-26 12:35:15] 2025-11-26 11:34:41,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:35:15] 2025-11-26 11:34:41,905 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:35:15] 2025-11-26 11:34:41,905 | INFO     | update_server=False
[2025-11-26 12:35:15] 2025-11-26 11:34:41,905 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:35:15] 2025-11-26 11:34:42,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:35:15] 2025-11-26 11:34:42,067 | INFO     | aborting loop
[2025-11-26 12:35:15] 2025-11-26 11:34:42,390 | INFO     | all data control threads have been joined
[2025-11-26 12:35:15] 2025-11-26 11:34:42,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:35:15] 2025-11-26 11:34:42,911 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:43,006 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:43,009 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:35:15] 2025-11-26 11:34:43,072 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:43,092 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:43,190 | INFO     | all job control threads have been joined
[2025-11-26 12:35:15] 2025-11-26 11:34:43,393 | INFO     | all payload control threads have been joined
[2025-11-26 12:35:15] 2025-11-26 11:34:43,396 | INFO     | [data] control thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:43,445 | INFO     | [job] validate thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:43,469 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:43,693 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:44,026 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:44,056 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:44,074 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:44,196 | INFO     | [job] control thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:44,276 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:44,399 | INFO     | [payload] control thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:44,936 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:35:15] 2025-11-26 11:34:45,016 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:34:48,945 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:35:15] 2025-11-26 11:35:02,115 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:35:15] 2025-11-26 11:35:03,969 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139758033876800)>', '<ExcThread(monitor, started 139757581473536)>']
[2025-11-26 12:35:15] 2025-11-26 11:35:08,995 | INFO     | all workflow threads have been joined
[2025-11-26 12:35:15] 2025-11-26 11:35:08,995 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:35:15] 2025-11-26 11:35:08,996 | INFO     | traces error code: 0
[2025-11-26 12:35:15] 2025-11-26 11:35:08,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:35:15] 2025-11-26 11:35:10,520 | INFO     | PID=13729 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 12:35:15] 2025-11-26 11:35:10,520 | INFO     | .. there are 2 such processes running
[2025-11-26 12:35:15] 2025-11-26 11:35:10,522 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:35:15] 2025-11-26 11:35:10,522 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:35:15] 2025-11-26 11:35:10,522 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:35:15] 2025-11-26 11:35:10,522 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:35:15] 2025-11-26 11:35:10,522 | INFO     | [monitor] control thread has ended
[2025-11-26 12:35:15] 2025-11-26 11:35:10,876 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:35:15] 2025-11-26 11:35:10,976 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:35:15] 2025-11-26 11:35:11,046 [wrapper] pilotpid: 13729
[2025-11-26 12:35:15] 2025-11-26 11:35:11,143 [wrapper] Pilot exit status: 0
[2025-11-26 12:35:15] 2025-11-26 11:35:11,561 [wrapper] pandaids: 6895339645
[2025-11-26 12:35:15] 2025-11-26 11:35:12,438 [wrapper] cleanup supervisor_pilot 19365 13730
[2025-11-26 12:35:15] 2025-11-26 11:35:12,537 [wrapper] Test setup, not cleaning
[2025-11-26 12:35:15] 2025-11-26 11:35:12,602 [wrapper] apfmon messages muted
[2025-11-26 12:35:15] 2025-11-26 11:35:12,691 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:35:15] 2025-11-26 11:35:12,815 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:35:15]  *** Error codes and diagnostics ***
[2025-11-26 12:35:15]     "exeErrorCode": 0,
[2025-11-26 12:35:15]     "exeErrorDiag": "",
[2025-11-26 12:35:15]     "pilotErrorCode": 0,
[2025-11-26 12:35:15]     "pilotErrorDiag": "",
[2025-11-26 12:35:15]  *** Listing of results directory ***
[2025-11-26 12:35:15] total 1347444
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc      5112 Nov 22 11:57 queuedata.json
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc    576529 Nov 22 11:57 pilot3.tar.gz
[2025-11-26 12:35:15] -rwx------. 1 boinc boinc     36292 Nov 22 11:59 runpilot2-wrapper.sh
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc       100 Nov 25 13:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:35:15] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 13:28 run_atlas
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc       105 Nov 25 13:28 job.xml
[2025-11-26 12:35:15] -rw-r--r--. 2 boinc boinc 408382281 Nov 25 13:28 EVNT.47483658._000354.pool.root.1
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc      6393 Nov 25 13:28 init_data.xml
[2025-11-26 12:35:15] -rw-r--r--. 2 boinc boinc     15847 Nov 25 13:28 start_atlas.sh
[2025-11-26 12:35:15] drwxrwx--x. 2 boinc boinc        68 Nov 25 13:28 shared
[2025-11-26 12:35:15] -rw-r--r--. 2 boinc boinc    590096 Nov 25 13:28 input.tar.gz
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc         0 Nov 25 13:28 boinc_lockfile
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc      2784 Nov 25 13:28 pandaJob.out
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc    991894 Nov 25 13:32 agis_schedconf.cvmfs.json
[2025-11-26 12:35:15] drwx------. 5 boinc boinc      4096 Nov 25 13:32 pilot3
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc       533 Nov 26 11:56 boinc_task_state.xml
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc 940234324 Nov 26 12:31 HITS.47556137._003502.pool.root.1
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc      1034 Nov 26 12:32 memory_monitor_summary.json
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc   1516240 Nov 26 12:32 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc   2467446 Nov 26 12:32 log.47556137._003502.job.log.tgz.1
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc      8641 Nov 26 12:34 heartbeat.json
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc        95 Nov 26 12:35 pilot_heartbeat.json
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc       820 Nov 26 12:35 pilotlog.txt
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc      8192 Nov 26 12:35 boinc_mmap_file
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc        29 Nov 26 12:35 wrapper_checkpoint.txt
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc  11163114 Nov 26 12:35 log.47556137._003502.job.log.1
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc       353 Nov 26 12:35 output.list
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc       620 Nov 26 12:35 runtime_log
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc  13649920 Nov 26 12:35 result.tar.gz
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc      8833 Nov 26 12:35 runtime_log.err
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc       662 Nov 26 12:35 C0xKDmgV0g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmN5HKDmHQRPQn.diag
[2025-11-26 12:35:15] -rw-r--r--. 1 boinc boinc     21505 Nov 26 12:35 stderr.txt
[2025-11-26 12:35:15] HITS file was successfully produced:
[2025-11-26 12:35:15] -rw-------. 1 boinc boinc 940234324 Nov 26 12:31 shared/HITS.pool.root.1
[2025-11-26 12:35:15]  *** Contents of shared directory: ***
[2025-11-26 12:35:16] total 1330940
[2025-11-26 12:35:16] -rw-r--r--. 2 boinc boinc 408382281 Nov 25 13:28 ATLAS.root_0
[2025-11-26 12:35:16] -rw-r--r--. 2 boinc boinc     15847 Nov 25 13:28 start_atlas.sh
[2025-11-26 12:35:16] -rw-r--r--. 2 boinc boinc    590096 Nov 25 13:28 input.tar.gz
[2025-11-26 12:35:16] -rw-------. 1 boinc boinc 940234324 Nov 26 12:31 HITS.pool.root.1
[2025-11-26 12:35:16] -rw-------. 1 boinc boinc  13649920 Nov 26 12:35 result.tar.gz
12:35:17 (10006): run_atlas exited; CPU time 340067.978806
12:35:17 (10006): called boinc_finish(0)

</stderr_txt>
]]>

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