Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:37:46 (2786207): wrapper (7.7.26015): starting
22:37:46 (2786207): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 22:37:46] Arguments: --nthreads 4
[2025-11-25 22:37:46] Threads: 4
[2025-11-25 22:37:46] Checking for CVMFS
[2025-11-25 22:37:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:37:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:37:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:37:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:37:47] 2.9.2.0 1682378 7546 95804 153298 1 81 27203458 36864000 0 130560 0 3181495 99.981 255281 6236 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 22:37:47] CVMFS is ok
[2025-11-25 22:37:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:37:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:37:47] Further information can be found at the LHC@home message board.
[2025-11-25 22:37:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:37:47] Checking for apptainer binary...
[2025-11-25 22:37:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:37:47] Running /usr/bin/apptainer --version
[2025-11-25 22:37:47] apptainer version 1.4.1-1.1
[2025-11-25 22:37:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:37:47] thA315b
[2025-11-25 22:37:47] apptainer works
[2025-11-25 22:37:47] Set ATHENA_PROC_NUMBER=4
[2025-11-25 22:37:47] Set ATHENA_CORE_NUMBER=4
[2025-11-25 22:37:47] Starting ATLAS job with PandaID=6895339519
[2025-11-25 22:37:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:41:26]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:41:26] 2025-11-26 03:40:52,262 | INFO     | process IDs to be killed: [2796591] (in reverse order)
[2025-11-26 04:41:26] 2025-11-26 03:40:52,289 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:41:26] 2025-11-26 03:40:52,289 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:41:26] 2025-11-26 03:40:52,291 | INFO     | did not find any defunct processes belonging to 2796591
[2025-11-26 04:41:26] 2025-11-26 03:40:52,292 | INFO     | did not find any defunct processes belonging to 2796591
[2025-11-26 04:41:26] 2025-11-26 03:40:52,292 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:41:26] 2025-11-26 03:40:52,292 | INFO     | ready for new job
[2025-11-26 04:41:26] 2025-11-26 03:40:52,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:41:26] 2025-11-26 03:40:52,294 | INFO     | ***************************************
[2025-11-26 04:41:26] 2025-11-26 03:40:52,294 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:41:26] 2025-11-26 03:40:52,294 | INFO     | ***************************************
[2025-11-26 04:41:26] 2025-11-26 03:40:52,294 | INFO     | 
[2025-11-26 04:41:26] 2025-11-26 03:40:52,294 | INFO     | architecture information:
[2025-11-26 04:41:26] 2025-11-26 03:40:52,294 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:41:26] 2025-11-26 03:40:52,304 | INFO     | cat /etc/os-release:
[2025-11-26 04:41:26] NAME="CentOS Linux"
[2025-11-26 04:41:26] VERSION="7 (Core)"
[2025-11-26 04:41:26] ID="centos"
[2025-11-26 04:41:26] ID_LIKE="rhel fedora"
[2025-11-26 04:41:26] VERSION_ID="7"
[2025-11-26 04:41:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:41:26] ANSI_COLOR="0;31"
[2025-11-26 04:41:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:41:26] HOME_URL="https://www.centos.org/"
[2025-11-26 04:41:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:41:26] 
[2025-11-26 04:41:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:41:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:41:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:41:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:41:26] 
[2025-11-26 04:41:26] 2025-11-26 03:40:52,304 | INFO     | ***************************************
[2025-11-26 04:41:26] 2025-11-26 03:40:52,807 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 04:41:26] 2025-11-26 03:40:52,821 | INFO     | sufficient remaining disk space (328722284544 B)
[2025-11-26 04:41:26] 2025-11-26 03:40:52,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:41:26] 2025-11-26 03:40:52,822 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:41:26] 2025-11-26 03:40:52,822 | INFO     | update_server=False
[2025-11-26 04:41:26] 2025-11-26 03:40:52,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:41:26] 2025-11-26 03:40:52,822 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:41:26] 2025-11-26 03:40:52,822 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:41:26] 2025-11-26 03:40:52,822 | INFO     | will abort loop
[2025-11-26 04:41:26] 2025-11-26 03:40:52,822 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:41:26] 2025-11-26 03:40:53,073 | INFO     | all payload control threads have been joined
[2025-11-26 04:41:26] 2025-11-26 03:40:53,074 | INFO     | all data control threads have been joined
[2025-11-26 04:41:26] 2025-11-26 03:40:53,544 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:41:26] 2025-11-26 03:40:53,828 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:53,828 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:53,828 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:54,074 | INFO     | [payload] control thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:54,079 | INFO     | [data] control thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:54,333 | INFO     | all job control threads have been joined
[2025-11-26 04:41:26] 2025-11-26 03:40:54,398 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:54,573 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:54,828 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:55,108 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:55,137 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:55,138 | INFO     | [job] validate thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:55,180 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:55,180 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:55,339 | INFO     | [job] control thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:40:57,551 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:41:03,452 | INFO     | job.realtimelogging is not enabled
[2025-11-26 04:41:26] 2025-11-26 03:41:04,457 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:41:26] 2025-11-26 03:41:21,469 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:41:26] 2025-11-26 03:41:21,820 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887961491264)>', '<ExcThread(monitor, started 139887453910784)>']
[2025-11-26 04:41:26] 2025-11-26 03:41:23,507 | INFO     | PID=2790000 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:41:26] 2025-11-26 03:41:23,508 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:41:26] 2025-11-26 03:41:23,508 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:41:26] 2025-11-26 03:41:23,508 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:41:26] 2025-11-26 03:41:23,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:41:26] 2025-11-26 03:41:23,508 | INFO     | [monitor] control thread has ended
[2025-11-26 04:41:26] 2025-11-26 03:41:26,837 | INFO     | all workflow threads have been joined
[2025-11-26 04:41:26] 2025-11-26 03:41:26,837 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:41:26] 2025-11-26 03:41:26,838 | INFO     | traces error code: 0
[2025-11-26 04:41:26] 2025-11-26 03:41:26,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:41:26] 2025-11-26 03:41:26,891 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:41:26] 2025-11-26 03:41:26,894 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:41:26] 2025-11-26 03:41:26,896 [wrapper] pilotpid: 2790000
[2025-11-26 04:41:26] 2025-11-26 03:41:26,899 [wrapper] Pilot exit status: 0
[2025-11-26 04:41:26] 2025-11-26 03:41:26,906 [wrapper] pandaids: 6895339519
[2025-11-26 04:41:26] 2025-11-26 03:41:26,925 [wrapper] cleanup supervisor_pilot 2834807 2790001
[2025-11-26 04:41:26] 2025-11-26 03:41:26,927 [wrapper] Test setup, not cleaning
[2025-11-26 04:41:26] 2025-11-26 03:41:26,930 [wrapper] apfmon messages muted
[2025-11-26 04:41:26] 2025-11-26 03:41:26,932 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:41:26] 2025-11-26 03:41:26,935 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:41:26]  *** Error codes and diagnostics ***
[2025-11-26 04:41:26]     "exeErrorCode": 0,
[2025-11-26 04:41:26]     "exeErrorDiag": "",
[2025-11-26 04:41:26]     "pilotErrorCode": 0,
[2025-11-26 04:41:26]     "pilotErrorDiag": "",
[2025-11-26 04:41:26]  *** Listing of results directory ***
[2025-11-26 04:41:26] total 1312564
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc    576529 Nov 22 11:20 pilot3.tar.gz
[2025-11-26 04:41:26] -rwx------ 1 boinc boinc     36292 Nov 22 11:31 runpilot2-wrapper.sh
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc      5112 Nov 22 11:31 queuedata.json
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc       100 Nov 25 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:41:26] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 22:37 run_atlas
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc       105 Nov 25 22:37 job.xml
[2025-11-26 04:41:26] -rw-r--r-- 2 boinc boinc 409631602 Nov 25 22:37 EVNT.47483658._000350.pool.root.1
[2025-11-26 04:41:26] drwxrwx--x 2 boinc boinc      4096 Nov 25 22:37 shared
[2025-11-26 04:41:26] -rw-r--r-- 2 boinc boinc    590096 Nov 25 22:37 input.tar.gz
[2025-11-26 04:41:26] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:37 start_atlas.sh
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc         0 Nov 25 22:37 boinc_setup_complete
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc      6444 Nov 25 22:37 init_data.xml
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc         0 Nov 25 22:37 boinc_lockfile
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc      2785 Nov 25 22:37 pandaJob.out
[2025-11-26 04:41:26] -rw------- 1 boinc boinc    991893 Nov 25 22:37 agis_schedconf.cvmfs.json
[2025-11-26 04:41:26] drwx------ 5 boinc boinc      4096 Nov 25 22:37 pilot3
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc       531 Nov 26 04:37 boinc_task_state.xml
[2025-11-26 04:41:26] -rw------- 1 boinc boinc 921937609 Nov 26 04:40 HITS.47556137._003468.pool.root.1
[2025-11-26 04:41:26] -rw------- 1 boinc boinc      1023 Nov 26 04:40 memory_monitor_summary.json
[2025-11-26 04:41:26] -rw------- 1 boinc boinc   1516240 Nov 26 04:40 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:41:26] -rw------- 1 boinc boinc   1215413 Nov 26 04:40 log.47556137._003468.job.log.tgz.1
[2025-11-26 04:41:26] -rw------- 1 boinc boinc        95 Nov 26 04:40 pilot_heartbeat.json
[2025-11-26 04:41:26] -rw------- 1 boinc boinc      8559 Nov 26 04:40 heartbeat.json
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc      8192 Nov 26 04:41 boinc_mmap_file
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc        28 Nov 26 04:41 wrapper_checkpoint.txt
[2025-11-26 04:41:26] -rw------- 1 boinc boinc      4826 Nov 26 04:41 pilotlog.txt
[2025-11-26 04:41:26] -rw------- 1 boinc boinc   3080686 Nov 26 04:41 log.47556137._003468.job.log.1
[2025-11-26 04:41:26] -rw------- 1 boinc boinc       353 Nov 26 04:41 output.list
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc       620 Nov 26 04:41 runtime_log
[2025-11-26 04:41:26] -rw------- 1 boinc boinc   4311040 Nov 26 04:41 result.tar.gz
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc      8903 Nov 26 04:41 runtime_log.err
[2025-11-26 04:41:26] -rw------- 1 boinc boinc       666 Nov 26 04:41 hDqNDmS5zg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDms7JKDmGrWGmn.diag
[2025-11-26 04:41:26] -rw-r--r-- 1 boinc boinc     10404 Nov 26 04:41 stderr.txt
[2025-11-26 04:41:26] HITS file was successfully produced:
[2025-11-26 04:41:26] -rw------- 1 boinc boinc 921937609 Nov 26 04:40 shared/HITS.pool.root.1
[2025-11-26 04:41:26]  *** Contents of shared directory: ***
[2025-11-26 04:41:26] total 1305180
[2025-11-26 04:41:26] -rw-r--r-- 2 boinc boinc 409631602 Nov 25 22:37 ATLAS.root_0
[2025-11-26 04:41:26] -rw-r--r-- 2 boinc boinc    590096 Nov 25 22:37 input.tar.gz
[2025-11-26 04:41:26] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:37 start_atlas.sh
[2025-11-26 04:41:26] -rw------- 1 boinc boinc 921937609 Nov 26 04:40 HITS.pool.root.1
[2025-11-26 04:41:26] -rw------- 1 boinc boinc   4311040 Nov 26 04:41 result.tar.gz
04:41:28 (2786207): run_atlas exited; CPU time 85138.004747
04:41:28 (2786207): called boinc_finish(0)

</stderr_txt>
]]>

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