Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:32:40 (2092): wrapper (7.7.26015): starting
00:32:40 (2092): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:32:40] Arguments: --nthreads 8
[2025-11-26 00:32:40] Threads: 8
[2025-11-26 00:32:40] Checking for CVMFS
[2025-11-26 00:32:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:32:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:32:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:32:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:32:43] 2.11.2.0 11529 221755 137860 153302 2 84 22959620 25165825 4632 130560 9 92345435 99.894 40698768 2512 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 00:32:43] CVMFS is ok
[2025-11-26 00:32:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:32:43] Checking for apptainer binary...
[2025-11-26 00:32:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:32:43] Running /usr/bin/apptainer --version
[2025-11-26 00:32:43] apptainer version 1.3.2-1.el7
[2025-11-26 00:32:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:32:59] cg-vwn354.simple-grid.lan
[2025-11-26 00:32:59] apptainer works
[2025-11-26 00:32:59] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:32:59] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:32:59] Starting ATLAS job with PandaID=6891571503
[2025-11-26 00:32:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:17:46]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:17:46] 2025-11-26 23:16:36,171 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:17:46] 2025-11-26 23:16:37,400 | INFO     | time since job start (85170s) is within the limit (172800.0s)
[2025-11-27 00:17:46] 2025-11-26 23:16:38,679 | INFO     | monitor loop #5731: job 0:6891571503 is in state 'finished'
[2025-11-27 00:17:46] 2025-11-26 23:16:38,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:17:46] 2025-11-26 23:16:39,407 | INFO     | time since job start (85172s) is within the limit (172800.0s)
[2025-11-27 00:17:46] 2025-11-26 23:16:41,184 | INFO     | monitor loop #5732: job 0:6891571503 is in state 'finished'
[2025-11-27 00:17:46] 2025-11-26 23:16:41,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:17:46] 2025-11-26 23:16:41,413 | INFO     | time since job start (85174s) is within the limit (172800.0s)
[2025-11-27 00:17:46] 2025-11-26 23:16:43,420 | INFO     | time since job start (85176s) is within the limit (172800.0s)
[2025-11-27 00:17:46] 2025-11-26 23:16:43,689 | INFO     | monitor loop #5733: job 0:6891571503 is in state 'finished'
[2025-11-27 00:17:46] 2025-11-26 23:16:43,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:17:46] 2025-11-26 23:16:45,429 | INFO     | time since job start (85178s) is within the limit (172800.0s)
[2025-11-27 00:17:46] 2025-11-26 23:16:46,194 | INFO     | monitor loop #5734: job 0:6891571503 is in state 'finished'
[2025-11-27 00:17:46] 2025-11-26 23:16:46,195 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:17:46] 2025-11-26 23:16:46,433 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 00:17:46] 2025-11-26 23:16:46,434 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 00:17:46] 2025-11-26 23:16:46,436 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891571503/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:17:46] 2025-11-26 23:16:46,437 | INFO     | extracted standard info from prmon json
[2025-11-27 00:17:46] 2025-11-26 23:16:46,437 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:17:46] 2025-11-26 23:16:46,437 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:17:46] 2025-11-26 23:16:46,463 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:17:46] 2025-11-26 23:16:46,465 | INFO     | sum of square deviations: 827382385043.0018
[2025-11-27 00:17:46] 2025-11-26 23:16:46,559 | INFO     | sum of deviations: 3495321539285.7354
[2025-11-27 00:17:46] 2025-11-26 23:16:46,560 | INFO     | mean x: 1764156618.0930064
[2025-11-27 00:17:46] 2025-11-26 23:16:46,560 | INFO     | mean y: 2838240.6532083633
[2025-11-27 00:17:46] 2025-11-26 23:16:46,560 | INFO     | intersect: -7449936603.681291
[2025-11-27 00:17:46] 2025-11-26 23:16:46,565 | INFO     | chi2: 23.009490181305402
[2025-11-27 00:17:46] 2025-11-26 23:16:46,567 | INFO     | sum of square deviations: 818467136064.5071
[2025-11-27 00:17:46] 2025-11-26 23:16:46,657 | INFO     | sum of deviations: 3957556911356.9136
[2025-11-27 00:17:46] 2025-11-26 23:16:46,657 | INFO     | mean x: 1764156465.596961
[2025-11-27 00:17:46] 2025-11-26 23:16:46,658 | INFO     | mean y: 2846145.933429812
[2025-11-27 00:17:46] 2025-11-26 23:16:46,658 | INFO     | intersect: -8527428687.957976
[2025-11-27 00:17:46] 2025-11-26 23:16:46,659 | INFO     | chi2: 19.754321083691536
[2025-11-27 00:17:46] 2025-11-26 23:16:46,660 | INFO     | current chi2=19.754321083691536 (change=14.147071803696912 %)
[2025-11-27 00:17:46] 2025-11-26 23:16:46,660 | INFO     | right removable region: 1381
[2025-11-27 00:17:46] 2025-11-26 23:16:46,661 | INFO     | sum of square deviations: 818466211304.5074
[2025-11-27 00:17:46] 2025-11-26 23:16:46,771 | INFO     | sum of deviations: 2904716426163.6255
[2025-11-27 00:17:46] 2025-11-26 23:16:46,772 | INFO     | mean x: 1764156770.596961
[2025-11-27 00:17:46] 2025-11-26 23:16:46,772 | INFO     | mean y: 2848342.0998552823
[2025-11-27 00:17:46] 2025-11-26 23:16:46,772 | INFO     | intersect: -6258100587.866737
[2025-11-27 00:17:46] 2025-11-26 23:16:46,774 | INFO     | chi2: 18.12864726434994
[2025-11-27 00:17:46] 2025-11-26 23:16:46,774 | INFO     | current chi2=18.12864726434994 (change=21.212303612537305 %)
[2025-11-27 00:17:46] 2025-11-26 23:16:46,774 | INFO     | left removable region: 10
[2025-11-27 00:17:46] 2025-11-26 23:16:46,776 | INFO     | sum of square deviations: 799077677911.6649
[2025-11-27 00:17:46] 2025-11-26 23:16:46,909 | INFO     | sum of deviations: 2953438079591.9385
[2025-11-27 00:17:46] 2025-11-26 23:16:46,910 | INFO     | mean x: 1764156740.1057622
[2025-11-27 00:17:46] 2025-11-26 23:16:46,910 | INFO     | mean y: 2866956.717724289
[2025-11-27 00:17:46] 2025-11-26 23:16:46,910 | INFO     | intersect: -6517560078.879083
[2025-11-27 00:17:46] 2025-11-26 23:16:46,911 | INFO     | chi2: 10.509163710172865
[2025-11-27 00:17:46] 2025-11-26 23:16:46,912 | INFO     | current memory leak: 3.70 B/s (using 1371 data points, chi2=10.51)
[2025-11-27 00:17:46] 2025-11-26 23:16:46,913 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 00:17:46] 2025-11-26 23:16:46,913 | INFO     | ..............................
[2025-11-27 00:17:46] 2025-11-26 23:16:46,913 | INFO     | . Timing measurements:
[2025-11-27 00:17:46] 2025-11-26 23:16:46,913 | INFO     | . get job = 0 s
[2025-11-27 00:17:46] 2025-11-26 23:16:46,913 | INFO     | . initial setup = 8 s
[2025-11-27 00:17:46] 2025-11-26 23:16:46,913 | INFO     | . payload setup = 153 s
[2025-11-27 00:17:46] 2025-11-26 23:16:46,913 | INFO     | . stage-in = 0 s
[2025-11-27 00:17:46] 2025-11-26 23:16:46,913 | INFO     | . payload execution = 84712 s
[2025-11-27 00:17:46] 2025-11-26 23:16:46,914 | INFO     | . stage-out = 4 s
[2025-11-27 00:17:46] 2025-11-26 23:16:46,914 | INFO     | . log creation = 2 s
[2025-11-27 00:17:46] 2025-11-26 23:16:46,914 | INFO     | ..............................
[2025-11-27 00:17:46] 2025-11-26 23:16:46,978 | INFO     | PID=5877 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 00:17:46] 2025-11-26 23:16:46,978 | INFO     | .. there are 9 such processes running
[2025-11-27 00:17:46] 2025-11-26 23:16:47,181 | INFO     | 
[2025-11-27 00:17:46] 2025-11-26 23:16:47,182 | INFO     | job summary report
[2025-11-27 00:17:46] 2025-11-26 23:16:47,182 | INFO     | --------------------------------------------------
[2025-11-27 00:17:46] 2025-11-26 23:16:47,182 | INFO     | PanDA job id: 6891571503
[2025-11-27 00:17:46] 2025-11-26 23:16:47,182 | INFO     | task id: 47493068
[2025-11-27 00:17:46] 2025-11-26 23:16:47,182 | INFO     | errors: (none)
[2025-11-27 00:17:46] 2025-11-26 23:16:47,182 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:17:46] 2025-11-26 23:16:47,182 | INFO     | pilot state: finished 
[2025-11-27 00:17:46] 2025-11-26 23:16:47,182 | INFO     | transexitcode: 0
[2025-11-27 00:17:46] 2025-11-26 23:16:47,183 | INFO     | exeerrorcode: 0
[2025-11-27 00:17:46] 2025-11-26 23:16:47,183 | INFO     | exeerrordiag: 
[2025-11-27 00:17:46] 2025-11-26 23:16:47,183 | INFO     | exitcode: 0
[2025-11-27 00:17:46] 2025-11-26 23:16:47,183 | INFO     | exitmsg: OK
[2025-11-27 00:17:46] 2025-11-26 23:16:47,183 | INFO     | cpuconsumptiontime: 320124 s
[2025-11-27 00:17:46] 2025-11-26 23:16:47,183 | INFO     | nevents: 1000
[2025-11-27 00:17:46] 2025-11-26 23:16:47,183 | INFO     | neventsw: 0
[2025-11-27 00:17:46] 2025-11-26 23:16:47,183 | INFO     | pid: 12380
[2025-11-27 00:17:46] 2025-11-26 23:16:47,184 | INFO     | pgrp: 12380
[2025-11-27 00:17:46] 2025-11-26 23:16:47,184 | INFO     | corecount: 8
[2025-11-27 00:17:46] 2025-11-26 23:16:47,184 | INFO     | event service: False
[2025-11-27 00:17:46] 2025-11-26 23:16:47,184 | INFO     | sizes: {0: 2284133, 1: 2284332, 12: 2284332, 23: 2284360, 34: 2284388, 44: 2284416, 55: 2284572, 66: 2284600, 77: 2284628, 87: 2284684, 98: 2284712, 104: 2285282, 
[2025-11-27 00:17:46] 2025-11-26 23:16:47,184 | INFO     | --------------------------------------------------
[2025-11-27 00:17:46] 2025-11-26 23:16:47,184 | INFO     | 
[2025-11-27 00:17:46] 2025-11-26 23:16:47,184 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-27 00:17:46] 2025-11-26 23:16:47,605 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,605 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,605 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,606 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,607 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,607 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,607 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:17:46] 2025-11-26 23:16:47,607 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,607 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:17:46] 2025-11-26 23:16:47,607 | INFO     | job 6891571503 has completed (purged errors)
[2025-11-27 00:17:46] 2025-11-26 23:16:47,607 | INFO     | overall cleanup function is called
[2025-11-27 00:17:46] 2025-11-26 23:16:48,623 | INFO     | --- collectZombieJob: --- 10, [12380]
[2025-11-27 00:17:46] 2025-11-26 23:16:48,624 | INFO     | zombie collector waiting for pid 12380
[2025-11-27 00:17:46] 2025-11-26 23:16:48,624 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:17:46] 2025-11-26 23:16:48,624 | INFO     | collected zombie processes
[2025-11-27 00:17:46] 2025-11-26 23:16:48,624 | INFO     | will attempt to kill all subprocesses of pid=12380
[2025-11-27 00:17:46] 2025-11-26 23:16:48,751 | INFO     | process IDs to be killed: [12380] (in reverse order)
[2025-11-27 00:17:46] 2025-11-26 23:16:49,307 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:17:46] 2025-11-26 23:16:49,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:17:46] 2025-11-26 23:16:49,310 | INFO     | did not find any defunct processes belonging to 12380
[2025-11-27 00:17:46] 2025-11-26 23:16:49,313 | INFO     | did not find any defunct processes belonging to 12380
[2025-11-27 00:17:46] 2025-11-26 23:16:49,337 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:17:46] 2025-11-26 23:16:49,338 | INFO     | ready for new job
[2025-11-27 00:17:46] 2025-11-26 23:16:49,338 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:17:46] 2025-11-26 23:16:49,343 | INFO     | ***************************************
[2025-11-27 00:17:46] 2025-11-26 23:16:49,343 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:17:46] 2025-11-26 23:16:49,343 | INFO     | ***************************************
[2025-11-27 00:17:46] 2025-11-26 23:16:49,343 | INFO     | 
[2025-11-27 00:17:46] 2025-11-26 23:16:49,344 | INFO     | pilot is running in a VM
[2025-11-27 00:17:46] 2025-11-26 23:16:49,344 | INFO     | architecture information:
[2025-11-27 00:17:46] 2025-11-26 23:16:49,349 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:17:46] 2025-11-26 23:16:49,671 | INFO     | cat /etc/os-release:
[2025-11-27 00:17:46] NAME="CentOS Linux"
[2025-11-27 00:17:46] VERSION="7 (Core)"
[2025-11-27 00:17:46] ID="centos"
[2025-11-27 00:17:46] ID_LIKE="rhel fedora"
[2025-11-27 00:17:46] VERSION_ID="7"
[2025-11-27 00:17:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:17:46] ANSI_COLOR="0;31"
[2025-11-27 00:17:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:17:46] HOME_URL="https://www.centos.org/"
[2025-11-27 00:17:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:17:46] 
[2025-11-27 00:17:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:17:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:17:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:17:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:17:46] 
[2025-11-27 00:17:46] 2025-11-26 23:16:49,671 | INFO     | ***************************************
[2025-11-27 00:17:46] 2025-11-26 23:16:50,174 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-27 00:17:46] 2025-11-26 23:16:50,471 | INFO     | sufficient remaining disk space (495160655872 B)
[2025-11-27 00:17:46] 2025-11-26 23:16:50,471 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:17:46] 2025-11-26 23:16:50,472 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:17:46] 2025-11-26 23:16:50,472 | INFO     | update_server=False
[2025-11-27 00:17:46] 2025-11-26 23:16:50,472 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:17:46] 2025-11-26 23:16:50,472 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:17:46] 2025-11-26 23:16:50,473 | INFO     | aborting loop
[2025-11-27 00:17:46] 2025-11-26 23:16:50,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:17:46] 2025-11-26 23:16:51,202 | INFO     | all payload control threads have been joined
[2025-11-27 00:17:46] 2025-11-26 23:16:51,313 | INFO     | all data control threads have been joined
[2025-11-27 00:17:46] 2025-11-26 23:16:51,435 | INFO     | all job control threads have been joined
[2025-11-27 00:17:46] 2025-11-26 23:16:51,477 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:51,478 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:51,821 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:51,921 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,082 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,090 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:17:46] 2025-11-26 23:16:52,208 | INFO     | [payload] control thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,235 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,242 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:17:46] 2025-11-26 23:16:52,243 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,319 | INFO     | [data] control thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,441 | INFO     | [job] control thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,491 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,624 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,813 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:52,859 | INFO     | [job] validate thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:53,096 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:16:56,251 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:17:46] 2025-11-26 23:17:19,112 | INFO     | PID=5877 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 00:17:46] 2025-11-26 23:17:19,112 | INFO     | .. there are 9 such processes running
[2025-11-27 00:17:46] 2025-11-26 23:17:19,112 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:17:46] 2025-11-26 23:17:19,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:17:46] 2025-11-26 23:17:19,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:17:46] 2025-11-26 23:17:35,598 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:17:46] 2025-11-26 23:17:37,570 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872124933952)>', '<ExcThread(monitor, started 139871314245376)>']
[2025-11-27 00:17:46] 2025-11-26 23:17:38,224 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:17:46] 2025-11-26 23:17:38,225 | INFO     | [monitor] control thread has ended
[2025-11-27 00:17:46] 2025-11-26 23:17:42,596 | INFO     | all workflow threads have been joined
[2025-11-27 00:17:46] 2025-11-26 23:17:42,597 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:17:46] 2025-11-26 23:17:42,597 | INFO     | traces error code: 0
[2025-11-27 00:17:46] 2025-11-26 23:17:42,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:17:46] 2025-11-26 23:17:42,960 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:17:46] 2025-11-26 23:17:43,051 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:17:46] 2025-11-26 23:17:43,091 [wrapper] pilotpid: 5877
[2025-11-27 00:17:46] 2025-11-26 23:17:43,134 [wrapper] Pilot exit status: 0
[2025-11-27 00:17:46] 2025-11-26 23:17:43,411 [wrapper] pandaids: 6891571503
[2025-11-27 00:17:46] 2025-11-26 23:17:44,127 [wrapper] cleanup supervisor_pilot  7449 5878
[2025-11-27 00:17:46] 2025-11-26 23:17:44,175 [wrapper] Test setup, not cleaning
[2025-11-27 00:17:46] 2025-11-26 23:17:44,237 [wrapper] apfmon messages muted
[2025-11-27 00:17:46] 2025-11-26 23:17:44,348 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:17:46] 2025-11-26 23:17:44,404 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:17:46]  *** Error codes and diagnostics ***
[2025-11-27 00:17:46]     "exeErrorCode": 0,
[2025-11-27 00:17:46]     "exeErrorDiag": "",
[2025-11-27 00:17:46]     "pilotErrorCode": 0,
[2025-11-27 00:17:46]     "pilotErrorDiag": "",
[2025-11-27 00:17:46]  *** Listing of results directory ***
[2025-11-27 00:17:46] total 1330356
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:50 queuedata.json
[2025-11-27 00:17:46] -rwx------. 1 boinc boinc     36292 Nov 18 16:51 runpilot2-wrapper.sh
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc       100 Nov 26 00:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:17:46] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 00:32 run_atlas
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc       105 Nov 26 00:32 job.xml
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc      6393 Nov 26 00:32 init_data.xml
[2025-11-27 00:17:46] -rw-r--r--. 2 boinc boinc 410748017 Nov 26 00:32 EVNT.47493065._000284.pool.root.1
[2025-11-27 00:17:46] drwxrwx--x. 2 boinc boinc        68 Nov 26 00:32 shared
[2025-11-27 00:17:46] -rw-r--r--. 2 boinc boinc    590102 Nov 26 00:32 input.tar.gz
[2025-11-27 00:17:46] -rw-r--r--. 2 boinc boinc     15120 Nov 26 00:32 start_atlas.sh
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc         0 Nov 26 00:32 boinc_lockfile
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc      2773 Nov 26 00:32 pandaJob.out
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc    991877 Nov 26 00:37 agis_schedconf.cvmfs.json
[2025-11-27 00:17:46] drwx------. 5 boinc boinc      4096 Nov 26 00:37 pilot3
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc       533 Nov 26 23:55 boinc_task_state.xml
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc 920020454 Nov 27 00:13 HITS.47493068._002833.pool.root.1
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc      1031 Nov 27 00:14 memory_monitor_summary.json
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc   1516240 Nov 27 00:15 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc   2479298 Nov 27 00:15 log.47493068._002833.job.log.tgz.1
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc        95 Nov 27 00:16 pilot_heartbeat.json
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc      7945 Nov 27 00:16 heartbeat.json
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc      8192 Nov 27 00:17 boinc_mmap_file
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc        29 Nov 27 00:17 wrapper_checkpoint.txt
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc      4883 Nov 27 00:17 pilotlog.txt
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc  11328910 Nov 27 00:17 log.47493068._002833.job.log.1
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc       353 Nov 27 00:17 output.list
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc       620 Nov 27 00:17 runtime_log
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc  13824000 Nov 27 00:17 result.tar.gz
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc      8703 Nov 27 00:17 runtime_log.err
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc       662 Nov 27 00:17 8pYKDmcAdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFhFKDmck2VMm.diag
[2025-11-27 00:17:46] -rw-r--r--. 1 boinc boinc     21518 Nov 27 00:17 stderr.txt
[2025-11-27 00:17:46] HITS file was successfully produced:
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc 920020454 Nov 27 00:13 shared/HITS.pool.root.1
[2025-11-27 00:17:46]  *** Contents of shared directory: ***
[2025-11-27 00:17:46] total 1313680
[2025-11-27 00:17:46] -rw-r--r--. 2 boinc boinc 410748017 Nov 26 00:32 ATLAS.root_0
[2025-11-27 00:17:46] -rw-r--r--. 2 boinc boinc    590102 Nov 26 00:32 input.tar.gz
[2025-11-27 00:17:46] -rw-r--r--. 2 boinc boinc     15120 Nov 26 00:32 start_atlas.sh
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc 920020454 Nov 27 00:13 HITS.pool.root.1
[2025-11-27 00:17:46] -rw-------. 1 boinc boinc  13824000 Nov 27 00:17 result.tar.gz
00:17:48 (2092): run_atlas exited; CPU time 320722.188727
00:17:48 (2092): called boinc_finish(0)

</stderr_txt>
]]>

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