Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:02:14 (5561): wrapper (7.7.26015): starting
02:02:14 (5561): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 02:02:14] Arguments: --nthreads 8
[2025-11-26 02:02:14] Threads: 8
[2025-11-26 02:02:14] Checking for CVMFS
[2025-11-26 02:02:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 02:02:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 02:02:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 02:02:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 02:02:15] 2.11.2.0 26867 284522 137992 153303 3 181 19709745 25165824 4151 130560 10 135662646 99.876 77689536 2846 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 02:02:15] CVMFS is ok
[2025-11-26 02:02:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 02:02:15] Checking for apptainer binary...
[2025-11-26 02:02:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 02:02:15] Running /usr/bin/apptainer --version
[2025-11-26 02:02:15] apptainer version 1.3.2-1.el7
[2025-11-26 02:02:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 02:02:16] cg-vwn435.simple-grid.lan
[2025-11-26 02:02:16] apptainer works
[2025-11-26 02:02:16] Set ATHENA_PROC_NUMBER=8
[2025-11-26 02:02:16] Set ATHENA_CORE_NUMBER=8
[2025-11-26 02:02:16] Starting ATLAS job with PandaID=6895338737
[2025-11-26 02:02:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:44:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:44:09] 2025-11-26 23:42:52,413 | INFO     | time since job start (81616s) is within the limit (172800.0s)
[2025-11-27 00:44:09] 2025-11-26 23:42:53,542 | INFO     | monitor loop #5438: job 0:6895338737 is in state 'finished'
[2025-11-27 00:44:09] 2025-11-26 23:42:53,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:44:09] 2025-11-26 23:42:54,420 | INFO     | time since job start (81618s) is within the limit (172800.0s)
[2025-11-27 00:44:09] 2025-11-26 23:42:56,047 | INFO     | monitor loop #5439: job 0:6895338737 is in state 'finished'
[2025-11-27 00:44:09] 2025-11-26 23:42:56,048 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:44:09] 2025-11-26 23:42:56,428 | INFO     | time since job start (81620s) is within the limit (172800.0s)
[2025-11-27 00:44:09] 2025-11-26 23:42:58,436 | INFO     | time since job start (81622s) is within the limit (172800.0s)
[2025-11-27 00:44:09] 2025-11-26 23:42:58,558 | INFO     | monitor loop #5440: job 0:6895338737 is in state 'finished'
[2025-11-27 00:44:09] 2025-11-26 23:42:58,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:44:09] 2025-11-26 23:43:00,443 | INFO     | time since job start (81624s) is within the limit (172800.0s)
[2025-11-27 00:44:09] 2025-11-26 23:43:01,065 | INFO     | monitor loop #5441: job 0:6895338737 is in state 'finished'
[2025-11-27 00:44:09] 2025-11-26 23:43:01,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:44:09] 2025-11-26 23:43:01,630 | INFO     | PID=9308 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 00:44:09] 2025-11-26 23:43:01,631 | INFO     | .. there are 9 such processes running
[2025-11-27 00:44:09] 2025-11-26 23:43:02,595 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 00:44:09] 2025-11-26 23:43:02,596 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 00:44:09] 2025-11-26 23:43:02,598 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6895338737/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:44:09] 2025-11-26 23:43:02,599 | INFO     | extracted standard info from prmon json
[2025-11-27 00:44:09] 2025-11-26 23:43:02,599 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:44:09] 2025-11-26 23:43:02,599 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:44:09] 2025-11-26 23:43:02,624 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:44:09] 2025-11-26 23:43:02,626 | INFO     | sum of square deviations: 737768777943.3181
[2025-11-27 00:44:09] 2025-11-26 23:43:02,633 | INFO     | time since job start (81626s) is within the limit (172800.0s)
[2025-11-27 00:44:09] 2025-11-26 23:43:02,688 | INFO     | sum of deviations: 2192587789548.854
[2025-11-27 00:44:09] 2025-11-26 23:43:02,689 | INFO     | mean x: 1764159747.104869
[2025-11-27 00:44:09] 2025-11-26 23:43:02,689 | INFO     | mean y: 2848011.22247191
[2025-11-27 00:44:09] 2025-11-26 23:43:02,689 | INFO     | intersect: -5240088849.156444
[2025-11-27 00:44:09] 2025-11-26 23:43:02,691 | INFO     | chi2: 15.295620510130878
[2025-11-27 00:44:09] 2025-11-26 23:43:02,693 | INFO     | sum of square deviations: 729510663664.6908
[2025-11-27 00:44:09] 2025-11-26 23:43:02,765 | INFO     | sum of deviations: 2633597459844.6616
[2025-11-27 00:44:09] 2025-11-26 23:43:02,766 | INFO     | mean x: 1764159594.6090226
[2025-11-27 00:44:09] 2025-11-26 23:43:02,766 | INFO     | mean y: 2856154.1781954886
[2025-11-27 00:44:09] 2025-11-26 23:43:02,766 | INFO     | intersect: -6365914665.131469
[2025-11-27 00:44:09] 2025-11-26 23:43:02,767 | INFO     | chi2: 12.064263311267997
[2025-11-27 00:44:09] 2025-11-26 23:43:02,768 | INFO     | current chi2=12.064263311267997 (change=21.1260288310803 %)
[2025-11-27 00:44:09] 2025-11-26 23:43:02,768 | INFO     | right removable region: 1329
[2025-11-27 00:44:09] 2025-11-26 23:43:02,769 | INFO     | sum of square deviations: 729509763914.6904
[2025-11-27 00:44:09] 2025-11-26 23:43:02,835 | INFO     | sum of deviations: 1764464862908.7834
[2025-11-27 00:44:09] 2025-11-26 23:43:02,835 | INFO     | mean x: 1764159899.6090226
[2025-11-27 00:44:09] 2025-11-26 23:43:02,835 | INFO     | mean y: 2855913.1187969926
[2025-11-27 00:44:09] 2025-11-26 23:43:02,835 | INFO     | intersect: -4264116661.3248
[2025-11-27 00:44:09] 2025-11-26 23:43:02,837 | INFO     | chi2: 12.598559546047607
[2025-11-27 00:44:09] 2025-11-26 23:43:02,837 | INFO     | current chi2=12.598559546047607 (change=17.632896699397733 %)
[2025-11-27 00:44:09] 2025-11-26 23:43:02,837 | INFO     | left removable region: 10
[2025-11-27 00:44:09] 2025-11-26 23:43:02,839 | INFO     | sum of square deviations: 711558922566.9412
[2025-11-27 00:44:09] 2025-11-26 23:43:02,889 | INFO     | sum of deviations: 2181271257691.6316
[2025-11-27 00:44:09] 2025-11-26 23:43:02,889 | INFO     | mean x: 1764159869.1137226
[2025-11-27 00:44:09] 2025-11-26 23:43:02,889 | INFO     | mean y: 2868243.2357846852
[2025-11-27 00:44:09] 2025-11-26 23:43:02,889 | INFO     | intersect: -5405132548.30622
[2025-11-27 00:44:09] 2025-11-26 23:43:02,891 | INFO     | chi2: 8.373240930384489
[2025-11-27 00:44:09] 2025-11-26 23:43:02,891 | INFO     | current memory leak: 3.07 B/s (using 1319 data points, chi2=8.37)
[2025-11-27 00:44:09] 2025-11-26 23:43:02,892 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | ..............................
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | . Timing measurements:
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | . get job = 0 s
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | . initial setup = 2 s
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | . payload setup = 28 s
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | . stage-in = 0 s
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | . payload execution = 81455 s
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | . stage-out = 5 s
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | . log creation = 1 s
[2025-11-27 00:44:09] 2025-11-26 23:43:02,893 | INFO     | ..............................
[2025-11-27 00:44:09] 2025-11-26 23:43:03,078 | INFO     | 
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | job summary report
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | --------------------------------------------------
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | PanDA job id: 6895338737
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | task id: 47556137
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | errors: (none)
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | pilot state: finished 
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | transexitcode: 0
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | exeerrorcode: 0
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | exeerrordiag: 
[2025-11-27 00:44:09] 2025-11-26 23:43:03,079 | INFO     | exitcode: 0
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | exitmsg: OK
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | cpuconsumptiontime: 309289 s
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | nevents: 1000
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | neventsw: 0
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | pid: 19851
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | pgrp: 19851
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | corecount: 8
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | event service: False
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | sizes: {0: 2284092, 1: 2284291, 2: 2284291, 11: 2284581, 12: 2284609, 81487: 2344521, 81494: 2353515, 81496: 2353571, 81596: 2353817}
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | --------------------------------------------------
[2025-11-27 00:44:09] 2025-11-26 23:43:03,080 | INFO     | 
[2025-11-27 00:44:09] 2025-11-26 23:43:03,081 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-27 00:44:09] 2025-11-26 23:43:03,586 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,586 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,586 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,586 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,586 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,586 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,586 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,587 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,588 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:44:09] 2025-11-26 23:43:03,588 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,588 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:44:09] 2025-11-26 23:43:03,588 | INFO     | job 6895338737 has completed (purged errors)
[2025-11-27 00:44:09] 2025-11-26 23:43:03,588 | INFO     | overall cleanup function is called
[2025-11-27 00:44:09] 2025-11-26 23:43:04,610 | INFO     | --- collectZombieJob: --- 10, [19851]
[2025-11-27 00:44:09] 2025-11-26 23:43:04,610 | INFO     | zombie collector waiting for pid 19851
[2025-11-27 00:44:09] 2025-11-26 23:43:04,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:44:09] 2025-11-26 23:43:04,611 | INFO     | collected zombie processes
[2025-11-27 00:44:09] 2025-11-26 23:43:04,611 | INFO     | will attempt to kill all subprocesses of pid=19851
[2025-11-27 00:44:09] 2025-11-26 23:43:04,727 | INFO     | process IDs to be killed: [19851] (in reverse order)
[2025-11-27 00:44:09] 2025-11-26 23:43:05,830 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:44:09] 2025-11-26 23:43:05,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:44:09] 2025-11-26 23:43:05,834 | INFO     | did not find any defunct processes belonging to 19851
[2025-11-27 00:44:09] 2025-11-26 23:43:05,836 | INFO     | did not find any defunct processes belonging to 19851
[2025-11-27 00:44:09] 2025-11-26 23:43:05,881 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:44:09] 2025-11-26 23:43:05,881 | INFO     | ready for new job
[2025-11-27 00:44:09] 2025-11-26 23:43:05,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:44:09] 2025-11-26 23:43:05,889 | INFO     | ***************************************
[2025-11-27 00:44:09] 2025-11-26 23:43:05,890 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:44:09] 2025-11-26 23:43:05,890 | INFO     | ***************************************
[2025-11-27 00:44:09] 2025-11-26 23:43:05,890 | INFO     | 
[2025-11-27 00:44:09] 2025-11-26 23:43:05,890 | INFO     | pilot is running in a VM
[2025-11-27 00:44:09] 2025-11-26 23:43:05,891 | INFO     | architecture information:
[2025-11-27 00:44:09] 2025-11-26 23:43:05,917 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:44:09] 2025-11-26 23:43:06,124 | INFO     | cat /etc/os-release:
[2025-11-27 00:44:09] NAME="CentOS Linux"
[2025-11-27 00:44:09] VERSION="7 (Core)"
[2025-11-27 00:44:09] ID="centos"
[2025-11-27 00:44:09] ID_LIKE="rhel fedora"
[2025-11-27 00:44:09] VERSION_ID="7"
[2025-11-27 00:44:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:44:09] ANSI_COLOR="0;31"
[2025-11-27 00:44:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:44:09] HOME_URL="https://www.centos.org/"
[2025-11-27 00:44:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:44:09] 
[2025-11-27 00:44:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:44:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:44:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:44:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:44:09] 
[2025-11-27 00:44:09] 2025-11-26 23:43:06,124 | INFO     | ***************************************
[2025-11-27 00:44:09] 2025-11-26 23:43:06,627 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-27 00:44:09] 2025-11-26 23:43:06,845 | INFO     | sufficient remaining disk space (495179530240 B)
[2025-11-27 00:44:09] 2025-11-26 23:43:06,846 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:44:09] 2025-11-26 23:43:06,846 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:44:09] 2025-11-26 23:43:06,846 | INFO     | update_server=False
[2025-11-27 00:44:09] 2025-11-26 23:43:06,846 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:44:09] 2025-11-26 23:43:06,847 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:44:09] 2025-11-26 23:43:06,890 | INFO     | all data control threads have been joined
[2025-11-27 00:44:09] 2025-11-26 23:43:07,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:44:09] 2025-11-26 23:43:07,084 | INFO     | aborting loop
[2025-11-27 00:44:09] 2025-11-26 23:43:07,241 | INFO     | all job control threads have been joined
[2025-11-27 00:44:09] 2025-11-26 23:43:07,853 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:07,896 | INFO     | [data] control thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:07,962 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:08,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:44:09] 2025-11-26 23:43:08,089 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:08,166 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:08,247 | INFO     | [job] control thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:08,256 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:44:09] 2025-11-26 23:43:08,351 | INFO     | all payload control threads have been joined
[2025-11-27 00:44:09] 2025-11-26 23:43:08,557 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:08,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:08,610 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:08,674 | INFO     | [job] validate thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:08,854 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:09,046 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:09,233 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:09,336 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:09,357 | INFO     | [payload] control thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:12,265 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:44:09] 2025-11-26 23:43:35,825 | INFO     | PID=9308 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 00:44:09] 2025-11-26 23:43:35,826 | INFO     | .. there are 9 such processes running
[2025-11-27 00:44:09] 2025-11-26 23:43:35,826 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:44:09] 2025-11-26 23:43:35,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:44:09] 2025-11-26 23:43:35,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:44:09] 2025-11-26 23:43:59,164 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:44:09] 2025-11-26 23:44:01,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139976551597888)>', '<ExcThread(monitor, started 139975953716992)>']
[2025-11-27 00:44:09] 2025-11-26 23:44:01,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:44:09] 2025-11-26 23:44:01,979 | INFO     | [monitor] control thread has ended
[2025-11-27 00:44:09] 2025-11-26 23:44:06,292 | INFO     | all workflow threads have been joined
[2025-11-27 00:44:09] 2025-11-26 23:44:06,293 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:44:09] 2025-11-26 23:44:06,293 | INFO     | traces error code: 0
[2025-11-27 00:44:09] 2025-11-26 23:44:06,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:44:09] 2025-11-26 23:44:06,460 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:44:09] 2025-11-26 23:44:06,464 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:44:09] 2025-11-26 23:44:06,558 [wrapper] pilotpid: 9308
[2025-11-27 00:44:09] 2025-11-26 23:44:06,573 [wrapper] Pilot exit status: 0
[2025-11-27 00:44:09] 2025-11-26 23:44:06,680 [wrapper] pandaids: 6895338737
[2025-11-27 00:44:09] 2025-11-26 23:44:06,778 [wrapper] cleanup supervisor_pilot  8682 9309
[2025-11-27 00:44:09] 2025-11-26 23:44:06,794 [wrapper] Test setup, not cleaning
[2025-11-27 00:44:09] 2025-11-26 23:44:06,881 [wrapper] apfmon messages muted
[2025-11-27 00:44:09] 2025-11-26 23:44:06,941 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:44:09] 2025-11-26 23:44:07,047 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:44:09]  *** Error codes and diagnostics ***
[2025-11-27 00:44:09]     "exeErrorCode": 0,
[2025-11-27 00:44:09]     "exeErrorDiag": "",
[2025-11-27 00:44:09]     "pilotErrorCode": 0,
[2025-11-27 00:44:09]     "pilotErrorDiag": "",
[2025-11-27 00:44:09]  *** Listing of results directory ***
[2025-11-27 00:44:09] total 1320040
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc    576529 Nov 22 10:55 pilot3.tar.gz
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc      5112 Nov 22 11:00 queuedata.json
[2025-11-27 00:44:09] -rwx------. 1 boinc boinc     36292 Nov 22 11:02 runpilot2-wrapper.sh
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc       100 Nov 26 02:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:44:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 02:02 run_atlas
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc       105 Nov 26 02:02 job.xml
[2025-11-27 00:44:09] -rw-r--r--. 2 boinc boinc 406210646 Nov 26 02:02 EVNT.47483658._000341.pool.root.1
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc      6391 Nov 26 02:02 init_data.xml
[2025-11-27 00:44:09] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:02 start_atlas.sh
[2025-11-27 00:44:09] drwxrwx--x. 2 boinc boinc        68 Nov 26 02:02 shared
[2025-11-27 00:44:09] -rw-r--r--. 2 boinc boinc    590105 Nov 26 02:02 input.tar.gz
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc         0 Nov 26 02:02 boinc_lockfile
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc      2784 Nov 26 02:02 pandaJob.out
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc    991877 Nov 26 02:02 agis_schedconf.cvmfs.json
[2025-11-27 00:44:09] drwx------. 5 boinc boinc      4096 Nov 26 02:02 pilot3
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc       533 Nov 27 00:18 boinc_task_state.xml
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc 915040402 Nov 27 00:39 HITS.47556137._003373.pool.root.1
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc      1032 Nov 27 00:41 memory_monitor_summary.json
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc   1516240 Nov 27 00:41 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc   2435137 Nov 27 00:41 log.47556137._003373.job.log.tgz.1
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc        95 Nov 27 00:42 pilot_heartbeat.json
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc      8622 Nov 27 00:43 heartbeat.json
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc      8192 Nov 27 00:43 boinc_mmap_file
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc        29 Nov 27 00:43 wrapper_checkpoint.txt
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc      4883 Nov 27 00:44 pilotlog.txt
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc  10850021 Nov 27 00:44 log.47556137._003373.job.log.1
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc       353 Nov 27 00:44 output.list
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc       620 Nov 27 00:44 runtime_log
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc  13301760 Nov 27 00:44 result.tar.gz
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc      8817 Nov 27 00:44 runtime_log.err
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc       662 Nov 27 00:44 PQtKDmbczg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd6JKDm4g1FPo.diag
[2025-11-27 00:44:09] -rw-r--r--. 1 boinc boinc     21467 Nov 27 00:44 stderr.txt
[2025-11-27 00:44:09] HITS file was successfully produced:
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc 915040402 Nov 27 00:39 shared/HITS.pool.root.1
[2025-11-27 00:44:09]  *** Contents of shared directory: ***
[2025-11-27 00:44:09] total 1303876
[2025-11-27 00:44:09] -rw-r--r--. 2 boinc boinc 406210646 Nov 26 02:02 ATLAS.root_0
[2025-11-27 00:44:09] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:02 start_atlas.sh
[2025-11-27 00:44:09] -rw-r--r--. 2 boinc boinc    590105 Nov 26 02:02 input.tar.gz
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc 915040402 Nov 27 00:39 HITS.pool.root.1
[2025-11-27 00:44:09] -rw-------. 1 boinc boinc  13301760 Nov 27 00:44 result.tar.gz
00:44:11 (5561): run_atlas exited; CPU time 309842.902387
00:44:11 (5561): called boinc_finish(0)

</stderr_txt>
]]>

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