Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:39:09 (25419): wrapper (7.7.26015): starting
03:39:09 (25419): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 03:39:09] Arguments: --nthreads 8
[2025-11-23 03:39:09] Threads: 8
[2025-11-23 03:39:09] Checking for CVMFS
[2025-11-23 03:39:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 03:39:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 03:39:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 03:39:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 03:39:09] 2.11.2.0 8539 113166 146292 153202 1 81 13855754 18432001 1885 130560 0 84727750 99.974 4717856 31501 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 03:39:09] CVMFS is ok
[2025-11-23 03:39:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 03:39:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 03:39:09] Further information can be found at the LHC@home message board.
[2025-11-23 03:39:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:39:09] Checking for apptainer binary...
[2025-11-23 03:39:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 03:39:09] Running /usr/bin/apptainer --version
[2025-11-23 03:39:09] apptainer version 1.3.2-1.el7
[2025-11-23 03:39:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:39:10] c-206-1.aglt2.org
[2025-11-23 03:39:10] apptainer works
[2025-11-23 03:39:10] Set ATHENA_PROC_NUMBER=8
[2025-11-23 03:39:10] Set ATHENA_CORE_NUMBER=8
[2025-11-23 03:39:10] Starting ATLAS job with PandaID=6895339081
[2025-11-23 03:39:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:39:45]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:39:45] 2025-11-24 03:39:11,885 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 22:39:45] 2025-11-24 03:39:11,888 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2450.2083333333335
[2025-11-23 22:39:45] 2025-11-24 03:39:11,891 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895339081/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 22:39:45] 2025-11-24 03:39:11,891 | INFO     | extracted standard info from prmon json
[2025-11-23 22:39:45] 2025-11-24 03:39:11,891 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 22:39:45] 2025-11-24 03:39:11,892 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 22:39:45] 2025-11-24 03:39:11,906 | INFO     | fitting pss+swap vs Time
[2025-11-23 22:39:45] 2025-11-24 03:39:11,907 | INFO     | sum of square deviations: 436815454160.562
[2025-11-23 22:39:45] 2025-11-24 03:39:11,930 | INFO     | sum of deviations: 1976906117899.266
[2025-11-23 22:39:45] 2025-11-24 03:39:11,930 | INFO     | mean x: 1763921349.5388045
[2025-11-23 22:39:45] 2025-11-24 03:39:11,930 | INFO     | mean y: 2872761.4995539696
[2025-11-23 22:39:45] 2025-11-24 03:39:11,930 | INFO     | intersect: -7980148155.417507
[2025-11-23 22:39:45] 2025-11-24 03:39:11,931 | INFO     | chi2: 5.516623571314843
[2025-11-23 22:39:45] 2025-11-24 03:39:11,932 | INFO     | sum of square deviations: 430996719974.10345
[2025-11-23 22:39:45] 2025-11-24 03:39:11,969 | INFO     | sum of deviations: 2320937498182.0156
[2025-11-23 22:39:45] 2025-11-24 03:39:11,970 | INFO     | mean x: 1763921197.0412185
[2025-11-23 22:39:45] 2025-11-24 03:39:11,970 | INFO     | mean y: 2881773.0215053763
[2025-11-23 22:39:45] 2025-11-24 03:39:11,970 | INFO     | intersect: -9495916385.574825
[2025-11-23 22:39:45] 2025-11-24 03:39:11,972 | INFO     | chi2: 2.7641084050314806
[2025-11-23 22:39:45] 2025-11-24 03:39:11,972 | INFO     | current chi2=2.7641084050314806 (change=49.894924507733315 %)
[2025-11-23 22:39:45] 2025-11-24 03:39:11,973 | INFO     | sum of square deviations: 425229893737.6324
[2025-11-23 22:39:45] 2025-11-24 03:39:12,002 | INFO     | sum of deviations: 2446706746402.5933
[2025-11-23 22:39:45] 2025-11-24 03:39:12,003 | INFO     | mean x: 1763921044.5436544
[2025-11-23 22:39:45] 2025-11-24 03:39:12,003 | INFO     | mean y: 2885094.7506750673
[2025-11-23 22:39:45] 2025-11-24 03:39:12,003 | INFO     | intersect: -10146442559.220245
[2025-11-23 22:39:45] 2025-11-24 03:39:12,005 | INFO     | chi2: 2.228736132372123
[2025-11-23 22:39:45] 2025-11-24 03:39:12,005 | INFO     | current chi2=2.228736132372123 (change=19.368714761144112 %)
[2025-11-23 22:39:45] 2025-11-24 03:39:12,005 | INFO     | right removable region: 1110
[2025-11-23 22:39:45] 2025-11-24 03:39:12,006 | INFO     | sum of square deviations: 430996351534.10406
[2025-11-23 22:39:45] 2025-11-24 03:39:12,036 | INFO     | sum of deviations: 1689012612276.8271
[2025-11-23 22:39:45] 2025-11-24 03:39:12,037 | INFO     | mean x: 1763921502.0412185
[2025-11-23 22:39:45] 2025-11-24 03:39:12,037 | INFO     | mean y: 2880297.568996416
[2025-11-23 22:39:45] 2025-11-24 03:39:12,037 | INFO     | intersect: -6909673958.190537
[2025-11-23 22:39:45] 2025-11-24 03:39:12,038 | INFO     | chi2: 3.5184711500910675
[2025-11-23 22:39:45] 2025-11-24 03:39:12,039 | INFO     | current chi2=3.5184711500910675 (change=36.22056853060814 %)
[2025-11-23 22:39:45] 2025-11-24 03:39:12,040 | INFO     | sum of square deviations: 425229225177.71844
[2025-11-23 22:39:45] 2025-11-24 03:39:12,070 | INFO     | sum of deviations: 1616976567648.3215
[2025-11-23 22:39:45] 2025-11-24 03:39:12,070 | INFO     | mean x: 1763921654.5427542
[2025-11-23 22:39:45] 2025-11-24 03:39:12,070 | INFO     | mean y: 2882202.077407741
[2025-11-23 22:39:45] 2025-11-24 03:39:12,070 | INFO     | intersect: -6704605932.989147
[2025-11-23 22:39:45] 2025-11-24 03:39:12,072 | INFO     | chi2: 3.467716759343482
[2025-11-23 22:39:45] 2025-11-24 03:39:12,072 | INFO     | current chi2=3.467716759343482 (change=1.4425126306996068 %)
[2025-11-23 22:39:45] 2025-11-24 03:39:12,072 | INFO     | left removable region: 20
[2025-11-23 22:39:45] 2025-11-24 03:39:12,074 | INFO     | sum of square deviations: 401569337836.0192
[2025-11-23 22:39:45] 2025-11-24 03:39:12,105 | INFO     | sum of deviations: 1995611154132.9746
[2025-11-23 22:39:45] 2025-11-24 03:39:12,106 | INFO     | mean x: 1763921624.0522935
[2025-11-23 22:39:45] 2025-11-24 03:39:12,106 | INFO     | mean y: 2897301.0706422017
[2025-11-23 22:39:45] 2025-11-24 03:39:12,106 | INFO     | intersect: -8762965368.983467
[2025-11-23 22:39:45] 2025-11-24 03:39:12,107 | INFO     | chi2: 0.14495893607223517
[2025-11-23 22:39:45] 2025-11-24 03:39:12,107 | INFO     | current memory leak: 4.97 B/s (using 1090 data points, chi2=0.14)
[2025-11-23 22:39:45] 2025-11-24 03:39:12,108 | INFO     | could have reported an average CPU frequency of 2628 MHz (41 samples)
[2025-11-23 22:39:45] 2025-11-24 03:39:12,108 | INFO     | ..............................
[2025-11-23 22:39:45] 2025-11-24 03:39:12,108 | INFO     | . Timing measurements:
[2025-11-23 22:39:45] 2025-11-24 03:39:12,108 | INFO     | . get job = 0 s
[2025-11-23 22:39:45] 2025-11-24 03:39:12,108 | INFO     | . initial setup = 2 s
[2025-11-23 22:39:45] 2025-11-24 03:39:12,108 | INFO     | . payload setup = 5 s
[2025-11-23 22:39:45] 2025-11-24 03:39:12,108 | INFO     | . stage-in = 0 s
[2025-11-23 22:39:45] 2025-11-24 03:39:12,109 | INFO     | . payload execution = 68355 s
[2025-11-23 22:39:45] 2025-11-24 03:39:12,109 | INFO     | . stage-out = 4 s
[2025-11-23 22:39:45] 2025-11-24 03:39:12,109 | INFO     | . log creation = 0 s
[2025-11-23 22:39:45] 2025-11-24 03:39:12,109 | INFO     | ..............................
[2025-11-23 22:39:45] 2025-11-24 03:39:12,349 | INFO     | 
[2025-11-23 22:39:45] 2025-11-24 03:39:12,349 | INFO     | job summary report
[2025-11-23 22:39:45] 2025-11-24 03:39:12,349 | INFO     | --------------------------------------------------
[2025-11-23 22:39:45] 2025-11-24 03:39:12,349 | INFO     | PanDA job id: 6895339081
[2025-11-23 22:39:45] 2025-11-24 03:39:12,349 | INFO     | task id: 47556149
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | errors: (none)
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | pilot state: finished 
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | transexitcode: 0
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | exeerrorcode: 0
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | exeerrordiag: 
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | exitcode: 0
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | exitmsg: OK
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | cpuconsumptiontime: 534186 s
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | nevents: 1000
[2025-11-23 22:39:45] 2025-11-24 03:39:12,350 | INFO     | neventsw: 0
[2025-11-23 22:39:45] 2025-11-24 03:39:12,351 | INFO     | pid: 3238
[2025-11-23 22:39:45] 2025-11-24 03:39:12,351 | INFO     | pgrp: 3238
[2025-11-23 22:39:45] 2025-11-24 03:39:12,351 | INFO     | corecount: 8
[2025-11-23 22:39:45] 2025-11-24 03:39:12,351 | INFO     | event service: False
[2025-11-23 22:39:45] 2025-11-24 03:39:12,351 | INFO     | sizes: {0: 2298633, 1: 2298832, 4: 2299094, 12: 2299122, 68364: 2355014, 68365: 2355013, 68369: 2364247, 68373: 2364533}
[2025-11-23 22:39:45] 2025-11-24 03:39:12,351 | INFO     | --------------------------------------------------
[2025-11-23 22:39:45] 2025-11-24 03:39:12,351 | INFO     | 
[2025-11-23 22:39:45] 2025-11-24 03:39:12,351 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-23 22:39:45] 2025-11-24 03:39:12,370 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,370 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,370 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,371 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,371 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,371 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,371 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,372 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,372 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,372 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,372 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,373 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,373 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,373 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 22:39:45] 2025-11-24 03:39:12,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,373 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 22:39:45] 2025-11-24 03:39:12,373 | INFO     | job 6895339081 has completed (purged errors)
[2025-11-23 22:39:45] 2025-11-24 03:39:12,374 | INFO     | overall cleanup function is called
[2025-11-23 22:39:45] 2025-11-24 03:39:12,678 | INFO     | PID=29130 has CPU usage=19.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 22:39:45] 2025-11-24 03:39:12,678 | INFO     | .. there are 3 such processes running
[2025-11-23 22:39:45] 2025-11-24 03:39:13,389 | INFO     | --- collectZombieJob: --- 10, [3238]
[2025-11-23 22:39:45] 2025-11-24 03:39:13,389 | INFO     | zombie collector waiting for pid 3238
[2025-11-23 22:39:45] 2025-11-24 03:39:13,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 22:39:45] 2025-11-24 03:39:13,397 | INFO     | collected zombie processes
[2025-11-23 22:39:45] 2025-11-24 03:39:13,398 | INFO     | will attempt to kill all subprocesses of pid=3238
[2025-11-23 22:39:45] 2025-11-24 03:39:13,554 | INFO     | process IDs to be killed: [3238] (in reverse order)
[2025-11-23 22:39:45] 2025-11-24 03:39:13,600 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 22:39:45] 2025-11-24 03:39:13,601 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 22:39:45] 2025-11-24 03:39:13,603 | INFO     | did not find any defunct processes belonging to 3238
[2025-11-23 22:39:45] 2025-11-24 03:39:13,606 | INFO     | did not find any defunct processes belonging to 3238
[2025-11-23 22:39:45] 2025-11-24 03:39:13,607 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 22:39:45] 2025-11-24 03:39:13,607 | INFO     | ready for new job
[2025-11-23 22:39:45] 2025-11-24 03:39:13,607 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 22:39:45] 2025-11-24 03:39:13,611 | INFO     | ***************************************
[2025-11-23 22:39:45] 2025-11-24 03:39:13,611 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 22:39:45] 2025-11-24 03:39:13,611 | INFO     | ***************************************
[2025-11-23 22:39:45] 2025-11-24 03:39:13,611 | INFO     | 
[2025-11-23 22:39:45] 2025-11-24 03:39:13,612 | INFO     | architecture information:
[2025-11-23 22:39:45] 2025-11-24 03:39:13,613 | INFO     | executing command: cat /etc/os-release
[2025-11-23 22:39:45] 2025-11-24 03:39:13,626 | INFO     | cat /etc/os-release:
[2025-11-23 22:39:45] NAME="CentOS Linux"
[2025-11-23 22:39:45] VERSION="7 (Core)"
[2025-11-23 22:39:45] ID="centos"
[2025-11-23 22:39:45] ID_LIKE="rhel fedora"
[2025-11-23 22:39:45] VERSION_ID="7"
[2025-11-23 22:39:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 22:39:45] ANSI_COLOR="0;31"
[2025-11-23 22:39:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 22:39:45] HOME_URL="https://www.centos.org/"
[2025-11-23 22:39:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 22:39:45] 
[2025-11-23 22:39:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 22:39:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 22:39:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 22:39:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 22:39:45] 
[2025-11-23 22:39:45] 2025-11-24 03:39:13,627 | INFO     | ***************************************
[2025-11-23 22:39:45] 2025-11-24 03:39:14,130 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-23 22:39:45] 2025-11-24 03:39:14,157 | INFO     | sufficient remaining disk space (24951914496 B)
[2025-11-23 22:39:45] 2025-11-24 03:39:14,157 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 22:39:45] 2025-11-24 03:39:14,158 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:39:45] 2025-11-24 03:39:14,158 | INFO     | update_server=False
[2025-11-23 22:39:45] 2025-11-24 03:39:14,158 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:39:45] 2025-11-24 03:39:14,158 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:39:45] 2025-11-24 03:39:14,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:39:45] 2025-11-24 03:39:14,159 | INFO     | aborting loop
[2025-11-23 22:39:45] 2025-11-24 03:39:14,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:39:45] 2025-11-24 03:39:14,265 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:39:45] 2025-11-24 03:39:14,990 | INFO     | all data control threads have been joined
[2025-11-23 22:39:45] 2025-11-24 03:39:14,996 | INFO     | all job control threads have been joined
[2025-11-23 22:39:45] 2025-11-24 03:39:15,160 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:15,160 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:15,161 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:15,166 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:15,376 | INFO     | all payload control threads have been joined
[2025-11-23 22:39:45] 2025-11-24 03:39:15,461 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:15,501 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:15,698 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:15,890 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:39:45] 2025-11-24 03:39:15,996 | INFO     | [data] control thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:16,002 | INFO     | [job] control thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:16,065 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:16,151 | INFO     | [job] validate thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:16,165 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:16,277 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:16,381 | INFO     | [payload] control thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:16,502 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:18,270 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:39:45] 2025-11-24 03:39:18,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708160481088)>', '<ExcThread(monitor, started 139707358897920)>']
[2025-11-23 22:39:45] 2025-11-24 03:39:23,968 | INFO     | all workflow threads have been joined
[2025-11-23 22:39:45] 2025-11-24 03:39:23,968 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:39:45] 2025-11-24 03:39:23,968 | INFO     | traces error code: 0
[2025-11-23 22:39:45] 2025-11-24 03:39:23,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:39:45] 2025-11-24 03:39:27,497 [wrapper] supervise_pilot (15 min periods counter: 77)
[2025-11-23 22:39:45] 2025-11-24 03:39:44,898 | INFO     | PID=29130 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 22:39:45] 2025-11-24 03:39:44,898 | INFO     | .. there are 3 such processes running
[2025-11-23 22:39:45] 2025-11-24 03:39:44,898 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:39:45] 2025-11-24 03:39:44,899 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:39:45] 2025-11-24 03:39:44,899 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:39:45] 2025-11-24 03:39:44,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:39:45] 2025-11-24 03:39:44,899 | INFO     | [monitor] control thread has ended
[2025-11-23 22:39:45] 2025-11-24 03:39:45,008 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:39:45] 2025-11-24 03:39:45,010 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:39:45] 2025-11-24 03:39:45,013 [wrapper] pilotpid: 29130
[2025-11-23 22:39:45] 2025-11-24 03:39:45,014 [wrapper] Pilot exit status: 0
[2025-11-23 22:39:45] 2025-11-24 03:39:45,024 [wrapper] pandaids: 6895339081
[2025-11-23 22:39:45] 2025-11-24 03:39:45,052 [wrapper] cleanup supervisor_pilot 12725 29131
[2025-11-23 22:39:45] 2025-11-24 03:39:45,055 [wrapper] Test setup, not cleaning
[2025-11-23 22:39:45] 2025-11-24 03:39:45,057 [wrapper] apfmon messages muted
[2025-11-23 22:39:45] 2025-11-24 03:39:45,060 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:39:45] 2025-11-24 03:39:45,062 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:39:45]  *** Error codes and diagnostics ***
[2025-11-23 22:39:45]     "exeErrorCode": 0,
[2025-11-23 22:39:45]     "exeErrorDiag": "",
[2025-11-23 22:39:45]     "pilotErrorCode": 0,
[2025-11-23 22:39:45]     "pilotErrorDiag": "",
[2025-11-23 22:39:45]  *** Listing of results directory ***
[2025-11-23 22:39:45] total 1334264
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 04:55 pilot3.tar.gz
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 05:07 queuedata.json
[2025-11-23 22:39:45] -rwx------ 1 boincer umatlas     36292 Nov 22 05:08 runpilot2-wrapper.sh
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas       100 Nov 23 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:39:45] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 03:39 run_atlas
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas       105 Nov 23 03:39 job.xml
[2025-11-23 22:39:45] -rw-r--r-- 2 boincer umatlas 411750002 Nov 23 03:39 EVNT.47483658._001083.pool.root.1
[2025-11-23 22:39:45] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 03:39 input.tar.gz
[2025-11-23 22:39:45] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 03:39 start_atlas.sh
[2025-11-23 22:39:45] drwxrwx--x 2 boincer umatlas      4096 Nov 23 03:39 shared
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas         0 Nov 23 03:39 boinc_lockfile
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 03:39 pandaJob.out
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas        57 Nov 23 03:39 setup.sh.local
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas    989784 Nov 23 03:39 agis_schedconf.cvmfs.json
[2025-11-23 22:39:45] drwx------ 5 boincer umatlas      4096 Nov 23 03:39 pilot3
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas       533 Nov 23 22:27 boinc_task_state.xml
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas      5953 Nov 23 22:36 init_data.xml
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas 927093697 Nov 23 22:38 HITS.47556149._000692.pool.root.1
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas        95 Nov 23 22:38 pilot_heartbeat.json
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas      1070 Nov 23 22:38 memory_monitor_summary.json
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas   1526164 Nov 23 22:39 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas   2298777 Nov 23 22:39 log.47556149._000692.job.log.tgz.1
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas      8661 Nov 23 22:39 heartbeat.json
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 22:39 boinc_mmap_file
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas        29 Nov 23 22:39 wrapper_checkpoint.txt
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas       820 Nov 23 22:39 pilotlog.txt
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas   9462764 Nov 23 22:39 log.47556149._000692.job.log.1
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas       353 Nov 23 22:39 output.list
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas       620 Nov 23 22:39 runtime_log
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas  11776000 Nov 23 22:39 result.tar.gz
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas      9338 Nov 23 22:39 runtime_log.err
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas       667 Nov 23 22:39 oi4MDmYizg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm26JKDm1Mnjen.diag
[2025-11-23 22:39:45] -rw-r--r-- 1 boincer umatlas     21348 Nov 23 22:39 stderr.txt
[2025-11-23 22:39:45] HITS file was successfully produced:
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas 927093697 Nov 23 22:38 shared/HITS.pool.root.1
[2025-11-23 22:39:45]  *** Contents of shared directory: ***
[2025-11-23 22:39:45] total 1319572
[2025-11-23 22:39:45] -rw-r--r-- 2 boincer umatlas 411750002 Nov 23 03:39 ATLAS.root_0
[2025-11-23 22:39:45] -rw-r--r-- 2 boincer umatlas    590099 Nov 23 03:39 input.tar.gz
[2025-11-23 22:39:45] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 03:39 start_atlas.sh
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas 927093697 Nov 23 22:38 HITS.pool.root.1
[2025-11-23 22:39:45] -rw------- 1 boincer umatlas  11776000 Nov 23 22:39 result.tar.gz
22:39:46 (25419): run_atlas exited; CPU time 533702.032968
22:39:46 (25419): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN