Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:59:04 (1455071): wrapper (7.7.26015): starting
20:59:04 (1455071): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 20:59:04] Arguments: --nthreads 12
[2025-11-23 20:59:04] Threads: 12
[2025-11-23 20:59:04] Checking for CVMFS
[2025-11-23 20:59:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:59:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:59:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:59:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:59:05] 2.13.3.0 9008 23387 404188 153219 3 81 43929542 46080000 7301 130560 0 141470258 99.882 50412007 27386 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-23 20:59:05] CVMFS is ok
[2025-11-23 20:59:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:59:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:59:05] Further information can be found at the LHC@home message board.
[2025-11-23 20:59:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:59:05] Checking for apptainer binary...
[2025-11-23 20:59:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:59:05] Running /usr/bin/apptainer --version
[2025-11-23 20:59:05] apptainer version 1.4.3-1.el9
[2025-11-23 20:59:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:59:05] mff2103.farm.particle.cz
[2025-11-23 20:59:05] apptainer works
[2025-11-23 20:59:05] Set ATHENA_PROC_NUMBER=12
[2025-11-23 20:59:05] Set ATHENA_CORE_NUMBER=12
[2025-11-23 20:59:05] Starting ATLAS job with PandaID=6894291430
[2025-11-23 20:59:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:42:57]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:42:57] 2025-11-24 01:41:56,684 | INFO     | monitor loop #1424: job 0:6894291430 is in state 'finished'
[2025-11-24 02:42:57] 2025-11-24 01:41:56,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:42:57] 2025-11-24 01:41:56,856 | INFO     | time since job start (20559s) is within the limit (172800.0s)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,259 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 02:42:57] 2025-11-24 01:41:58,276 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2732.094458333333
[2025-11-24 02:42:57] 2025-11-24 01:41:58,294 | INFO     | using path: /scratch/.boinc/slots/5/PanDA_Pilot-6894291430/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,295 | INFO     | extracted standard info from prmon json
[2025-11-24 02:42:57] 2025-11-24 01:41:58,295 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:42:57] 2025-11-24 01:41:58,295 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:42:57] 2025-11-24 01:41:58,301 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:42:57] 2025-11-24 01:41:58,301 | INFO     | sum of square deviations: 11867538908.640915
[2025-11-24 02:42:57] 2025-11-24 01:41:58,304 | INFO     | sum of deviations: 222841258501.6588
[2025-11-24 02:42:57] 2025-11-24 01:41:58,305 | INFO     | mean x: 1763938236.967359
[2025-11-24 02:42:57] 2025-11-24 01:41:58,305 | INFO     | mean y: 3466167.6053412464
[2025-11-24 02:42:57] 2025-11-24 01:41:58,305 | INFO     | intersect: -33118668056.77019
[2025-11-24 02:42:57] 2025-11-24 01:41:58,305 | INFO     | chi2: 5.820853650264179
[2025-11-24 02:42:57] 2025-11-24 01:41:58,306 | INFO     | sum of square deviations: 11347200668.891563
[2025-11-24 02:42:57] 2025-11-24 01:41:58,309 | INFO     | sum of deviations: 355134088755.855
[2025-11-24 02:42:57] 2025-11-24 01:41:58,309 | INFO     | mean x: 1763938084.4819276
[2025-11-24 02:42:57] 2025-11-24 01:41:58,309 | INFO     | mean y: 3504886.4759036144
[2025-11-24 02:42:57] 2025-11-24 01:41:58,309 | INFO     | intersect: -55202581842.17539
[2025-11-24 02:42:57] 2025-11-24 01:41:58,310 | INFO     | chi2: 2.708920708331163
[2025-11-24 02:42:57] 2025-11-24 01:41:58,310 | INFO     | current chi2=2.708920708331163 (change=53.46179665231372 %)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,310 | INFO     | sum of square deviations: 10842264442.972422
[2025-11-24 02:42:57] 2025-11-24 01:41:58,313 | INFO     | sum of deviations: 391910208894.1651
[2025-11-24 02:42:57] 2025-11-24 01:41:58,313 | INFO     | mean x: 1763937931.9908257
[2025-11-24 02:42:57] 2025-11-24 01:41:58,313 | INFO     | mean y: 3515893.0550458715
[2025-11-24 02:42:57] 2025-11-24 01:41:58,314 | INFO     | intersect: -63756714918.41036
[2025-11-24 02:42:57] 2025-11-24 01:41:58,314 | INFO     | chi2: 2.128125969249269
[2025-11-24 02:42:57] 2025-11-24 01:41:58,314 | INFO     | current chi2=2.128125969249269 (change=21.440078969298952 %)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,314 | INFO     | right removable region: 326
[2025-11-24 02:42:57] 2025-11-24 01:41:58,315 | INFO     | sum of square deviations: 11347042558.807272
[2025-11-24 02:42:57] 2025-11-24 01:41:58,318 | INFO     | sum of deviations: 121043912964.63855
[2025-11-24 02:42:57] 2025-11-24 01:41:58,318 | INFO     | mean x: 1763938389.4759035
[2025-11-24 02:42:57] 2025-11-24 01:41:58,318 | INFO     | mean y: 3495860.204819277
[2025-11-24 02:42:57] 2025-11-24 01:41:58,318 | INFO     | intersect: -18813213761.191822
[2025-11-24 02:42:57] 2025-11-24 01:41:58,318 | INFO     | chi2: 3.813726544302116
[2025-11-24 02:42:57] 2025-11-24 01:41:58,319 | INFO     | current chi2=3.813726544302116 (change=34.48166242542396 %)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,319 | INFO     | sum of square deviations: 10842049483.804314
[2025-11-24 02:42:57] 2025-11-24 01:41:58,322 | INFO     | sum of deviations: 98519162252.367
[2025-11-24 02:42:57] 2025-11-24 01:41:58,322 | INFO     | mean x: 1763938541.9755352
[2025-11-24 02:42:57] 2025-11-24 01:41:58,322 | INFO     | mean y: 3502651.0458715595
[2025-11-24 02:42:57] 2025-11-24 01:41:58,322 | INFO     | intersect: -16024993407.719027
[2025-11-24 02:42:57] 2025-11-24 01:41:58,323 | INFO     | chi2: 3.7787285790346057
[2025-11-24 02:42:57] 2025-11-24 01:41:58,323 | INFO     | current chi2=3.7787285790346057 (change=0.9176841826742693 %)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,323 | INFO     | left removable region: 20
[2025-11-24 02:42:57] 2025-11-24 01:41:58,323 | INFO     | sum of square deviations: 8884603792.5
[2025-11-24 02:42:57] 2025-11-24 01:41:58,326 | INFO     | sum of deviations: 232391465058.5
[2025-11-24 02:42:57] 2025-11-24 01:41:58,326 | INFO     | mean x: 1763938511.5
[2025-11-24 02:42:57] 2025-11-24 01:41:58,326 | INFO     | mean y: 3565107.4215686275
[2025-11-24 02:42:57] 2025-11-24 01:41:58,326 | INFO     | intersect: -46135155823.120674
[2025-11-24 02:42:57] 2025-11-24 01:41:58,327 | INFO     | chi2: 0.02759236301075734
[2025-11-24 02:42:57] 2025-11-24 01:41:58,327 | INFO     | current memory leak: 26.16 B/s (using 306 data points, chi2=0.03)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,327 | INFO     | could have reported an average CPU frequency of 2721 MHz (15 samples)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | ..............................
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | . Timing measurements:
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | . get job = 0 s
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | . initial setup = 1 s
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | . payload setup = 7 s
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | . stage-in = 0 s
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | . payload execution = 20518 s
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | . stage-out = 4 s
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | . log creation = 0 s
[2025-11-24 02:42:57] 2025-11-24 01:41:58,328 | INFO     | ..............................
[2025-11-24 02:42:57] 2025-11-24 01:41:58,425 | INFO     | 
[2025-11-24 02:42:57] 2025-11-24 01:41:58,425 | INFO     | job summary report
[2025-11-24 02:42:57] 2025-11-24 01:41:58,425 | INFO     | --------------------------------------------------
[2025-11-24 02:42:57] 2025-11-24 01:41:58,425 | INFO     | PanDA job id: 6894291430
[2025-11-24 02:42:57] 2025-11-24 01:41:58,425 | INFO     | task id: 47533967
[2025-11-24 02:42:57] 2025-11-24 01:41:58,425 | INFO     | errors: (none)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,425 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:42:57] 2025-11-24 01:41:58,425 | INFO     | pilot state: finished 
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | transexitcode: 0
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | exeerrorcode: 0
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | exeerrordiag: 
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | exitcode: 0
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | exitmsg: OK
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | cpuconsumptiontime: 234762 s
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | nevents: 1000
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | neventsw: 0
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | pid: 1467094
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | pgrp: 1467094
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | corecount: 12
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | event service: False
[2025-11-24 02:42:57] 2025-11-24 01:41:58,426 | INFO     | sizes: {0: 2298643, 1: 2298785, 6: 2299047, 11: 2299075, 20529: 2333725, 20530: 2333724, 20534: 2342904, 20535: 2342960, 20544: 2343206}
[2025-11-24 02:42:57] 2025-11-24 01:41:58,427 | INFO     | --------------------------------------------------
[2025-11-24 02:42:57] 2025-11-24 01:41:58,427 | INFO     | 
[2025-11-24 02:42:57] 2025-11-24 01:41:58,427 | INFO     | executing command: ls -lF /scratch/.boinc/slots/5
[2025-11-24 02:42:57] 2025-11-24 01:41:58,453 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,454 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,454 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,454 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,454 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,454 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,454 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,454 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,454 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,455 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:42:57] 2025-11-24 01:41:58,456 | INFO     | job 6894291430 has completed (purged errors)
[2025-11-24 02:42:57] 2025-11-24 01:41:58,456 | INFO     | overall cleanup function is called
[2025-11-24 02:42:57] 2025-11-24 01:41:59,479 | INFO     | --- collectZombieJob: --- 10, [1467094]
[2025-11-24 02:42:57] 2025-11-24 01:41:59,480 | INFO     | zombie collector waiting for pid 1467094
[2025-11-24 02:42:57] 2025-11-24 01:41:59,480 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:42:57] 2025-11-24 01:41:59,480 | INFO     | collected zombie processes
[2025-11-24 02:42:57] 2025-11-24 01:41:59,480 | INFO     | will attempt to kill all subprocesses of pid=1467094
[2025-11-24 02:42:57] 2025-11-24 01:41:59,880 | INFO     | process IDs to be killed: [1467094] (in reverse order)
[2025-11-24 02:42:57] 2025-11-24 01:42:00,015 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:42:57] 2025-11-24 01:42:00,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:42:57] 2025-11-24 01:42:00,028 | INFO     | did not find any defunct processes belonging to 1467094
[2025-11-24 02:42:57] 2025-11-24 01:42:00,039 | INFO     | did not find any defunct processes belonging to 1467094
[2025-11-24 02:42:57] 2025-11-24 01:42:00,041 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:42:57] 2025-11-24 01:42:00,041 | INFO     | ready for new job
[2025-11-24 02:42:57] 2025-11-24 01:42:00,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:42:57] 2025-11-24 01:42:00,044 | INFO     | ***************************************
[2025-11-24 02:42:57] 2025-11-24 01:42:00,045 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:42:57] 2025-11-24 01:42:00,045 | INFO     | ***************************************
[2025-11-24 02:42:57] 2025-11-24 01:42:00,045 | INFO     | 
[2025-11-24 02:42:57] 2025-11-24 01:42:00,051 | INFO     | architecture information:
[2025-11-24 02:42:57] 2025-11-24 01:42:00,052 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:42:57] 2025-11-24 01:42:00,073 | INFO     | cat /etc/os-release:
[2025-11-24 02:42:57] NAME="CentOS Linux"
[2025-11-24 02:42:57] VERSION="7 (Core)"
[2025-11-24 02:42:57] ID="centos"
[2025-11-24 02:42:57] ID_LIKE="rhel fedora"
[2025-11-24 02:42:57] VERSION_ID="7"
[2025-11-24 02:42:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:42:57] ANSI_COLOR="0;31"
[2025-11-24 02:42:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:42:57] HOME_URL="https://www.centos.org/"
[2025-11-24 02:42:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:42:57] 
[2025-11-24 02:42:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:42:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:42:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:42:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:42:57] 
[2025-11-24 02:42:57] 2025-11-24 01:42:00,073 | INFO     | ***************************************
[2025-11-24 02:42:57] 2025-11-24 01:42:00,575 | INFO     | executing command: df -mP /scratch/.boinc/slots/5
[2025-11-24 02:42:57] 2025-11-24 01:42:00,601 | INFO     | sufficient remaining disk space (1668752080896 B)
[2025-11-24 02:42:57] 2025-11-24 01:42:00,601 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:42:57] 2025-11-24 01:42:00,601 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:42:57] 2025-11-24 01:42:00,601 | INFO     | update_server=False
[2025-11-24 02:42:57] 2025-11-24 01:42:00,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:42:57] 2025-11-24 01:42:00,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:42:57] 2025-11-24 01:42:00,602 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:42:57] 2025-11-24 01:42:00,602 | INFO     | aborting loop
[2025-11-24 02:42:57] 2025-11-24 01:42:01,463 | INFO     | all payload control threads have been joined
[2025-11-24 02:42:57] 2025-11-24 01:42:01,603 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:01,604 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:01,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:42:57] 2025-11-24 01:42:01,695 | INFO     | all data control threads have been joined
[2025-11-24 02:42:57] 2025-11-24 01:42:01,862 | INFO     | all job control threads have been joined
[2025-11-24 02:42:57] 2025-11-24 01:42:01,868 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:01,923 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:01,927 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:01,942 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:02,469 | INFO     | [payload] control thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:02,601 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:02,700 | INFO     | [data] control thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:02,818 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:02,868 | INFO     | [job] control thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:02,902 | INFO     | [job] validate thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:03,010 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:03,436 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:42:57] 2025-11-24 01:42:03,666 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:04,442 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:04,609 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:42:57] 2025-11-24 01:42:30,405 | INFO     | PID=1459131 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 02:42:57] 2025-11-24 01:42:30,405 | INFO     | .. there are 8 such processes running
[2025-11-24 02:42:57] 2025-11-24 01:42:30,406 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:42:57] 2025-11-24 01:42:30,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:42:57] 2025-11-24 01:42:30,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:42:57] 2025-11-24 01:42:51,390 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:42:57] 2025-11-24 01:42:52,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139628631635776)>', '<ExcThread(monitor, started 139628145260288)>']
[2025-11-24 02:42:57] 2025-11-24 01:42:52,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:42:57] 2025-11-24 01:42:52,516 | INFO     | [monitor] control thread has ended
[2025-11-24 02:42:57] 2025-11-24 01:42:57,429 | INFO     | all workflow threads have been joined
[2025-11-24 02:42:57] 2025-11-24 01:42:57,429 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:42:57] 2025-11-24 01:42:57,429 | INFO     | traces error code: 0
[2025-11-24 02:42:57] 2025-11-24 01:42:57,429 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:42:57] 2025-11-24 01:42:57,627 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:42:57] 2025-11-24 01:42:57,631 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:42:57] 2025-11-24 01:42:57,635 [wrapper] pilotpid: 1459131
[2025-11-24 02:42:57] 2025-11-24 01:42:57,639 [wrapper] Pilot exit status: 0
[2025-11-24 02:42:57] 2025-11-24 01:42:57,654 [wrapper] pandaids: 6894291430
[2025-11-24 02:42:57] 2025-11-24 01:42:57,754 [wrapper] cleanup supervisor_pilot 1945550 1459132
[2025-11-24 02:42:57] 2025-11-24 01:42:57,758 [wrapper] Test setup, not cleaning
[2025-11-24 02:42:57] 2025-11-24 01:42:57,762 [wrapper] apfmon messages muted
[2025-11-24 02:42:57] 2025-11-24 01:42:57,766 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:42:57] 2025-11-24 01:42:57,769 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:42:57]  *** Error codes and diagnostics ***
[2025-11-24 02:42:57]     "exeErrorCode": 0,
[2025-11-24 02:42:57]     "exeErrorDiag": "",
[2025-11-24 02:42:57]     "pilotErrorCode": 0,
[2025-11-24 02:42:57]     "pilotErrorDiag": "",
[2025-11-24 02:42:57]  *** Listing of results directory ***
[2025-11-24 02:42:57] total 1317304
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc    576529 Nov 21 13:04 pilot3.tar.gz
[2025-11-24 02:42:57] -rwx------ 1 boinc boinc     36292 Nov 21 13:19 runpilot2-wrapper.sh
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc      5112 Nov 21 13:19 queuedata.json
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc       100 Nov 23 20:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:42:57] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 20:59 run_atlas
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc       105 Nov 23 20:59 job.xml
[2025-11-24 02:42:57] -rw-r--r-- 2 boinc boinc 411981538 Nov 23 20:59 EVNT.47493127._002445.pool.root.1
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc      6665 Nov 23 20:59 init_data.xml
[2025-11-24 02:42:57] -rw-r--r-- 2 boinc boinc     15847 Nov 23 20:59 start_atlas.sh
[2025-11-24 02:42:57] drwxrwx--x 2 boinc boinc      4096 Nov 23 20:59 shared
[2025-11-24 02:42:57] -rw-r--r-- 2 boinc boinc    590107 Nov 23 20:59 input.tar.gz
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc         0 Nov 23 20:59 boinc_lockfile
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc      2785 Nov 23 20:59 pandaJob.out
[2025-11-24 02:42:57] -rw------- 1 boinc boinc    989786 Nov 23 20:59 agis_schedconf.cvmfs.json
[2025-11-24 02:42:57] drwx------ 5 boinc boinc      4096 Nov 23 20:59 pilot3
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc       533 Nov 24 02:33 boinc_task_state.xml
[2025-11-24 02:42:57] -rw------- 1 boinc boinc 923075329 Nov 24 02:41 HITS.47533967._004163.pool.root.1
[2025-11-24 02:42:57] -rw------- 1 boinc boinc      1034 Nov 24 02:41 memory_monitor_summary.json
[2025-11-24 02:42:57] -rw------- 1 boinc boinc   1526164 Nov 24 02:41 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:42:57] -rw------- 1 boinc boinc   2102069 Nov 24 02:41 log.47533967._004163.job.log.tgz.1
[2025-11-24 02:42:57] -rw------- 1 boinc boinc      8600 Nov 24 02:41 heartbeat.json
[2025-11-24 02:42:57] -rw------- 1 boinc boinc        95 Nov 24 02:42 pilot_heartbeat.json
[2025-11-24 02:42:57] -rw------- 1 boinc boinc      4827 Nov 24 02:42 pilotlog.txt
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc      8192 Nov 24 02:42 boinc_mmap_file
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc        29 Nov 24 02:42 wrapper_checkpoint.txt
[2025-11-24 02:42:57] -rw------- 1 boinc boinc   2866476 Nov 24 02:42 log.47533967._004163.job.log.1
[2025-11-24 02:42:57] -rw------- 1 boinc boinc       353 Nov 24 02:42 output.list
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc       620 Nov 24 02:42 runtime_log
[2025-11-24 02:42:57] -rw------- 1 boinc boinc   4986880 Nov 24 02:42 result.tar.gz
[2025-11-24 02:42:57] -rw------- 1 boinc boinc       671 Nov 24 02:42 USiMDmeHfg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcbHKDmVYIqUo.diag
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc      8881 Nov 24 02:42 runtime_log.err
[2025-11-24 02:42:57] -rw-r--r-- 1 boinc boinc     21362 Nov 24 02:42 stderr.txt
[2025-11-24 02:42:57] HITS file was successfully produced:
[2025-11-24 02:42:57] -rw------- 1 boinc boinc 923075329 Nov 24 02:41 shared/HITS.pool.root.1
[2025-11-24 02:42:57]  *** Contents of shared directory: ***
[2025-11-24 02:42:57] total 1309248
[2025-11-24 02:42:57] -rw-r--r-- 2 boinc boinc 411981538 Nov 23 20:59 ATLAS.root_0
[2025-11-24 02:42:57] -rw-r--r-- 2 boinc boinc     15847 Nov 23 20:59 start_atlas.sh
[2025-11-24 02:42:57] -rw-r--r-- 2 boinc boinc    590107 Nov 23 20:59 input.tar.gz
[2025-11-24 02:42:57] -rw------- 1 boinc boinc 923075329 Nov 24 02:41 HITS.pool.root.1
[2025-11-24 02:42:57] -rw------- 1 boinc boinc   4986880 Nov 24 02:42 result.tar.gz
02:42:59 (1455071): run_atlas exited; CPU time 234791.692108
02:42:59 (1455071): called boinc_finish(0)

</stderr_txt>
]]>

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