Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:34:37 (2090): wrapper (7.7.26015): starting
03:34:37 (2090): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 03:34:37] Arguments: --nthreads 8
[2025-11-23 03:34:37] Threads: 8
[2025-11-23 03:34:37] Checking for CVMFS
[2025-11-23 03:34:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 03:34:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 03:34:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 03:34:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 03:34:37] 2.11.2.0 2878 52943 81648 153202 0 81 12357507 20275200 1 130560 0 10551254 99.767 3246625 30838 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 03:34:37] CVMFS is ok
[2025-11-23 03:34:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 03:34:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 03:34:37] Further information can be found at the LHC@home message board.
[2025-11-23 03:34:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:34:37] Checking for apptainer binary...
[2025-11-23 03:34:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 03:34:37] Running /usr/bin/apptainer --version
[2025-11-23 03:34:37] apptainer version 1.3.2-1.el7
[2025-11-23 03:34:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:34:39] c-204-27.aglt2.org
[2025-11-23 03:34:39] apptainer works
[2025-11-23 03:34:39] Set ATHENA_PROC_NUMBER=8
[2025-11-23 03:34:39] Set ATHENA_CORE_NUMBER=8
[2025-11-23 03:34:39] Starting ATLAS job with PandaID=6895339124
[2025-11-23 03:34:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 16:12:23]  *** The last 200 lines of the pilot log: ***
[2025-11-23 16:12:23] 2025-11-23 21:11:51,126 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 16:12:23] 2025-11-23 21:11:51,130 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-23 16:12:23] 2025-11-23 21:11:51,132 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895339124/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,134 | INFO     | extracted standard info from prmon json
[2025-11-23 16:12:23] 2025-11-23 21:11:51,134 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 16:12:23] 2025-11-23 21:11:51,134 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 16:12:23] 2025-11-23 21:11:51,147 | INFO     | fitting pss+swap vs Time
[2025-11-23 16:12:23] 2025-11-23 21:11:51,148 | INFO     | sum of square deviations: 127701682438.43935
[2025-11-23 16:12:23] 2025-11-23 21:11:51,159 | INFO     | sum of deviations: 804989878595.7866
[2025-11-23 16:12:23] 2025-11-23 21:11:51,159 | INFO     | mean x: 1763909592.1491935
[2025-11-23 16:12:23] 2025-11-23 21:11:51,160 | INFO     | mean y: 3179349.560483871
[2025-11-23 16:12:23] 2025-11-23 21:11:51,160 | INFO     | intersect: -11115933111.018276
[2025-11-23 16:12:23] 2025-11-23 21:11:51,161 | INFO     | chi2: 5.816481223641993
[2025-11-23 16:12:23] 2025-11-23 21:11:51,161 | INFO     | sum of square deviations: 125144460871.3178
[2025-11-23 16:12:23] 2025-11-23 21:11:51,173 | INFO     | sum of deviations: 1061066775042.5731
[2025-11-23 16:12:23] 2025-11-23 21:11:51,173 | INFO     | mean x: 1763909439.653586
[2025-11-23 16:12:23] 2025-11-23 21:11:51,173 | INFO     | mean y: 3194614.7834912045
[2025-11-23 16:12:23] 2025-11-23 21:11:51,173 | INFO     | intersect: -14952526857.5789
[2025-11-23 16:12:23] 2025-11-23 21:11:51,174 | INFO     | chi2: 3.0475771806376755
[2025-11-23 16:12:23] 2025-11-23 21:11:51,174 | INFO     | current chi2=3.0475771806376755 (change=47.60445252964415 %)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,175 | INFO     | sum of square deviations: 122621612041.66742
[2025-11-23 16:12:23] 2025-11-23 21:11:51,182 | INFO     | monitor loop #3337: job 0:6895339124 is in state 'finished'
[2025-11-23 16:12:23] 2025-11-23 21:11:51,186 | INFO     | sum of deviations: 1168066798025.0398
[2025-11-23 16:12:23] 2025-11-23 21:11:51,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,187 | INFO     | mean x: 1763909287.1580381
[2025-11-23 16:12:23] 2025-11-23 21:11:51,188 | INFO     | mean y: 3201071.63760218
[2025-11-23 16:12:23] 2025-11-23 21:11:51,188 | INFO     | intersect: -16799415031.282316
[2025-11-23 16:12:23] 2025-11-23 21:11:51,189 | INFO     | chi2: 2.399879641383009
[2025-11-23 16:12:23] 2025-11-23 21:11:51,189 | INFO     | current chi2=2.399879641383009 (change=21.25286747025525 %)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,189 | INFO     | right removable region: 733
[2025-11-23 16:12:23] 2025-11-23 21:11:51,190 | INFO     | sum of square deviations: 125144166241.31778
[2025-11-23 16:12:23] 2025-11-23 21:11:51,202 | INFO     | sum of deviations: 577691345944.9344
[2025-11-23 16:12:23] 2025-11-23 21:11:51,202 | INFO     | mean x: 1763909744.653586
[2025-11-23 16:12:23] 2025-11-23 21:11:51,202 | INFO     | mean y: 3192882.062246279
[2025-11-23 16:12:23] 2025-11-23 21:11:51,202 | INFO     | intersect: -8139379201.9561825
[2025-11-23 16:12:23] 2025-11-23 21:11:51,203 | INFO     | chi2: 3.543589928459104
[2025-11-23 16:12:23] 2025-11-23 21:11:51,203 | INFO     | current chi2=3.543589928459104 (change=39.07674086429384 %)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,204 | INFO     | sum of square deviations: 122621022781.6673
[2025-11-23 16:12:23] 2025-11-23 21:11:51,215 | INFO     | sum of deviations: 534425093942.4091
[2025-11-23 16:12:23] 2025-11-23 21:11:51,215 | INFO     | mean x: 1763909897.1580381
[2025-11-23 16:12:23] 2025-11-23 21:11:51,215 | INFO     | mean y: 3195495.6171662128
[2025-11-23 16:12:23] 2025-11-23 21:11:51,215 | INFO     | intersect: -7684537742.207096
[2025-11-23 16:12:23] 2025-11-23 21:11:51,216 | INFO     | chi2: 3.5078298897437907
[2025-11-23 16:12:23] 2025-11-23 21:11:51,216 | INFO     | current chi2=3.5078298897437907 (change=1.009147204876026 %)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,216 | INFO     | left removable region: 20
[2025-11-23 16:12:23] 2025-11-23 21:11:51,217 | INFO     | sum of square deviations: 112394790960.2211
[2025-11-23 16:12:23] 2025-11-23 21:11:51,228 | INFO     | sum of deviations: 843428697966.7067
[2025-11-23 16:12:23] 2025-11-23 21:11:51,228 | INFO     | mean x: 1763909866.6676016
[2025-11-23 16:12:23] 2025-11-23 21:11:51,228 | INFO     | mean y: 3220728.9396914444
[2025-11-23 16:12:23] 2025-11-23 21:11:51,228 | INFO     | intersect: -13233444328.790808
[2025-11-23 16:12:23] 2025-11-23 21:11:51,229 | INFO     | chi2: 0.06279465594368659
[2025-11-23 16:12:23] 2025-11-23 21:11:51,229 | INFO     | current memory leak: 7.50 B/s (using 713 data points, chi2=0.06)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,229 | INFO     | could have reported an average CPU frequency of 2165 MHz (28 samples)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,230 | INFO     | ..............................
[2025-11-23 16:12:23] 2025-11-23 21:11:51,230 | INFO     | . Timing measurements:
[2025-11-23 16:12:23] 2025-11-23 21:11:51,230 | INFO     | . get job = 0 s
[2025-11-23 16:12:23] 2025-11-23 21:11:51,230 | INFO     | . initial setup = 2 s
[2025-11-23 16:12:23] 2025-11-23 21:11:51,230 | INFO     | . payload setup = 9 s
[2025-11-23 16:12:23] 2025-11-23 21:11:51,230 | INFO     | . stage-in = 0 s
[2025-11-23 16:12:23] 2025-11-23 21:11:51,230 | INFO     | . payload execution = 45373 s
[2025-11-23 16:12:23] 2025-11-23 21:11:51,230 | INFO     | . stage-out = 3 s
[2025-11-23 16:12:23] 2025-11-23 21:11:51,231 | INFO     | . log creation = 0 s
[2025-11-23 16:12:23] 2025-11-23 21:11:51,231 | INFO     | ..............................
[2025-11-23 16:12:23] 2025-11-23 21:11:51,527 | INFO     | 
[2025-11-23 16:12:23] 2025-11-23 21:11:51,527 | INFO     | job summary report
[2025-11-23 16:12:23] 2025-11-23 21:11:51,527 | INFO     | --------------------------------------------------
[2025-11-23 16:12:23] 2025-11-23 21:11:51,528 | INFO     | PanDA job id: 6895339124
[2025-11-23 16:12:23] 2025-11-23 21:11:51,528 | INFO     | task id: 47556137
[2025-11-23 16:12:23] 2025-11-23 21:11:51,528 | INFO     | errors: (none)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,528 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 16:12:23] 2025-11-23 21:11:51,528 | INFO     | pilot state: finished 
[2025-11-23 16:12:23] 2025-11-23 21:11:51,528 | INFO     | transexitcode: 0
[2025-11-23 16:12:23] 2025-11-23 21:11:51,529 | INFO     | exeerrorcode: 0
[2025-11-23 16:12:23] 2025-11-23 21:11:51,529 | INFO     | exeerrordiag: 
[2025-11-23 16:12:23] 2025-11-23 21:11:51,529 | INFO     | exitcode: 0
[2025-11-23 16:12:23] 2025-11-23 21:11:51,529 | INFO     | exitmsg: OK
[2025-11-23 16:12:23] 2025-11-23 21:11:51,529 | INFO     | cpuconsumptiontime: 351250 s
[2025-11-23 16:12:23] 2025-11-23 21:11:51,529 | INFO     | nevents: 1000
[2025-11-23 16:12:23] 2025-11-23 21:11:51,530 | INFO     | neventsw: 0
[2025-11-23 16:12:23] 2025-11-23 21:11:51,530 | INFO     | pid: 13394
[2025-11-23 16:12:23] 2025-11-23 21:11:51,530 | INFO     | pgrp: 13394
[2025-11-23 16:12:23] 2025-11-23 21:11:51,530 | INFO     | corecount: 8
[2025-11-23 16:12:23] 2025-11-23 21:11:51,530 | INFO     | event service: False
[2025-11-23 16:12:23] 2025-11-23 21:11:51,531 | INFO     | sizes: {0: 2298534, 1: 2298733, 7: 2298995, 11: 2299023, 45386: 2345117, 45390: 2354295, 45396: 2354485}
[2025-11-23 16:12:23] 2025-11-23 21:11:51,531 | INFO     | --------------------------------------------------
[2025-11-23 16:12:23] 2025-11-23 21:11:51,531 | INFO     | 
[2025-11-23 16:12:23] 2025-11-23 21:11:51,531 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 16:12:23] 2025-11-23 21:11:51,559 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,561 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,561 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,561 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,561 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,562 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,562 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,562 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,562 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,562 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,562 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,563 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,563 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,563 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 16:12:23] 2025-11-23 21:11:51,563 | INFO     | job 6895339124 has completed (purged errors)
[2025-11-23 16:12:23] 2025-11-23 21:11:51,564 | INFO     | overall cleanup function is called
[2025-11-23 16:12:23] 2025-11-23 21:11:52,580 | INFO     | --- collectZombieJob: --- 10, [13394]
[2025-11-23 16:12:23] 2025-11-23 21:11:52,580 | INFO     | zombie collector waiting for pid 13394
[2025-11-23 16:12:23] 2025-11-23 21:11:52,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 16:12:23] 2025-11-23 21:11:52,581 | INFO     | collected zombie processes
[2025-11-23 16:12:23] 2025-11-23 21:11:52,581 | INFO     | will attempt to kill all subprocesses of pid=13394
[2025-11-23 16:12:23] 2025-11-23 21:11:52,671 | INFO     | process IDs to be killed: [13394] (in reverse order)
[2025-11-23 16:12:23] 2025-11-23 21:11:52,727 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 16:12:23] 2025-11-23 21:11:52,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 16:12:23] 2025-11-23 21:11:52,731 | INFO     | did not find any defunct processes belonging to 13394
[2025-11-23 16:12:23] 2025-11-23 21:11:52,735 | INFO     | did not find any defunct processes belonging to 13394
[2025-11-23 16:12:23] 2025-11-23 21:11:52,737 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 16:12:23] 2025-11-23 21:11:52,738 | INFO     | ready for new job
[2025-11-23 16:12:23] 2025-11-23 21:11:52,738 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 16:12:23] 2025-11-23 21:11:52,741 | INFO     | ***************************************
[2025-11-23 16:12:23] 2025-11-23 21:11:52,741 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 16:12:23] 2025-11-23 21:11:52,741 | INFO     | ***************************************
[2025-11-23 16:12:23] 2025-11-23 21:11:52,741 | INFO     | 
[2025-11-23 16:12:23] 2025-11-23 21:11:52,742 | INFO     | architecture information:
[2025-11-23 16:12:23] 2025-11-23 21:11:52,743 | INFO     | executing command: cat /etc/os-release
[2025-11-23 16:12:23] 2025-11-23 21:11:52,761 | INFO     | cat /etc/os-release:
[2025-11-23 16:12:23] NAME="CentOS Linux"
[2025-11-23 16:12:23] VERSION="7 (Core)"
[2025-11-23 16:12:23] ID="centos"
[2025-11-23 16:12:23] ID_LIKE="rhel fedora"
[2025-11-23 16:12:23] VERSION_ID="7"
[2025-11-23 16:12:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 16:12:23] ANSI_COLOR="0;31"
[2025-11-23 16:12:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 16:12:23] HOME_URL="https://www.centos.org/"
[2025-11-23 16:12:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 16:12:23] 
[2025-11-23 16:12:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 16:12:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 16:12:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 16:12:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 16:12:23] 
[2025-11-23 16:12:23] 2025-11-23 21:11:52,762 | INFO     | ***************************************
[2025-11-23 16:12:23] 2025-11-23 21:11:53,264 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 16:12:23] 2025-11-23 21:11:53,285 | INFO     | sufficient remaining disk space (17419993088 B)
[2025-11-23 16:12:23] 2025-11-23 21:11:53,285 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 16:12:23] 2025-11-23 21:11:53,286 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 16:12:23] 2025-11-23 21:11:53,286 | INFO     | update_server=False
[2025-11-23 16:12:23] 2025-11-23 21:11:53,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 16:12:23] 2025-11-23 21:11:53,286 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:12:23] 2025-11-23 21:11:53,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 16:12:23] 2025-11-23 21:11:53,690 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 16:12:23] 2025-11-23 21:11:53,691 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 16:12:23] 2025-11-23 21:11:53,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:12:23] 2025-11-23 21:11:53,696 | INFO     | will abort loop
[2025-11-23 16:12:23] 2025-11-23 21:11:53,780 | INFO     | all data control threads have been joined
[2025-11-23 16:12:23] 2025-11-23 21:11:53,985 | INFO     | all payload control threads have been joined
[2025-11-23 16:12:23] 2025-11-23 21:11:54,290 | INFO     | [job] queue monitor thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:54,291 | INFO     | [job] retrieve thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:54,590 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:54,702 | INFO     | [job] job monitor thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:54,757 | INFO     | [payload] validate_post thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:54,759 | INFO     | [payload] failed_post thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:54,785 | INFO     | [data] control thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:54,817 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:54,893 | INFO     | all job control threads have been joined
[2025-11-23 16:12:23] 2025-11-23 21:11:54,988 | INFO     | [payload] control thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:55,293 | INFO     | [data] copytool_out thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:55,309 | INFO     | [data] copytool_in thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:55,350 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:55,408 | INFO     | [job] validate thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:55,647 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:55,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 16:12:23] 2025-11-23 21:11:55,898 | INFO     | [job] control thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:11:59,788 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 16:12:23] 2025-11-23 21:12:12,611 | INFO     | [monitor] cgroup control has ended
[2025-11-23 16:12:23] 2025-11-23 21:12:14,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215035057984)>', '<ExcThread(monitor, started 140214206969600)>']
[2025-11-23 16:12:23] 2025-11-23 21:12:19,708 | INFO     | all workflow threads have been joined
[2025-11-23 16:12:23] 2025-11-23 21:12:19,708 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 16:12:23] 2025-11-23 21:12:19,712 | INFO     | traces error code: 0
[2025-11-23 16:12:23] 2025-11-23 21:12:19,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 16:12:23] 2025-11-23 21:12:22,889 | INFO     | PID=5935 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 16:12:23] 2025-11-23 21:12:22,890 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 16:12:23] 2025-11-23 21:12:22,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 16:12:23] 2025-11-23 21:12:22,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 16:12:23] 2025-11-23 21:12:22,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 16:12:23] 2025-11-23 21:12:22,891 | INFO     | [monitor] control thread has ended
[2025-11-23 16:12:23] 2025-11-23 21:12:23,019 [wrapper] ==== pilot stdout END ====
[2025-11-23 16:12:23] 2025-11-23 21:12:23,023 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 16:12:23] 2025-11-23 21:12:23,028 [wrapper] pilotpid: 5935
[2025-11-23 16:12:23] 2025-11-23 21:12:23,033 [wrapper] Pilot exit status: 0
[2025-11-23 16:12:23] 2025-11-23 21:12:23,051 [wrapper] pandaids: 6895339124
[2025-11-23 16:12:23] 2025-11-23 21:12:23,096 [wrapper] cleanup supervisor_pilot 18089 5936
[2025-11-23 16:12:23] 2025-11-23 21:12:23,102 [wrapper] Test setup, not cleaning
[2025-11-23 16:12:23] 2025-11-23 21:12:23,107 [wrapper] apfmon messages muted
[2025-11-23 16:12:23] 2025-11-23 21:12:23,111 [wrapper] ==== wrapper stdout END ====
[2025-11-23 16:12:23] 2025-11-23 21:12:23,116 [wrapper] ==== wrapper stderr END ====
[2025-11-23 16:12:23]  *** Error codes and diagnostics ***
[2025-11-23 16:12:23]     "exeErrorCode": 0,
[2025-11-23 16:12:23]     "exeErrorDiag": "",
[2025-11-23 16:12:23]     "pilotErrorCode": 0,
[2025-11-23 16:12:23]     "pilotErrorDiag": "",
[2025-11-23 16:12:23]  *** Listing of results directory ***
[2025-11-23 16:12:23] total 1329288
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 04:55 pilot3.tar.gz
[2025-11-23 16:12:23] -rwx------ 1 boincer umatlas     36292 Nov 22 05:11 runpilot2-wrapper.sh
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 05:11 queuedata.json
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas       100 Nov 23 03:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 16:12:23] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 03:34 run_atlas
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas       105 Nov 23 03:34 job.xml
[2025-11-23 16:12:23] -rw-r--r-- 2 boincer umatlas 409857749 Nov 23 03:34 EVNT.47483658._000346.pool.root.1
[2025-11-23 16:12:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 03:34 start_atlas.sh
[2025-11-23 16:12:23] drwxrwx--x 2 boincer umatlas      4096 Nov 23 03:34 shared
[2025-11-23 16:12:23] -rw-r--r-- 2 boincer umatlas    590095 Nov 23 03:34 input.tar.gz
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas         0 Nov 23 03:34 boinc_lockfile
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 03:34 pandaJob.out
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas        57 Nov 23 03:34 setup.sh.local
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas    989784 Nov 23 03:34 agis_schedconf.cvmfs.json
[2025-11-23 16:12:23] drwx------ 5 boincer umatlas      4096 Nov 23 03:34 pilot3
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas       533 Nov 23 16:01 boinc_task_state.xml
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas      5912 Nov 23 16:10 init_data.xml
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas 930939519 Nov 23 16:11 HITS.47556137._003425.pool.root.1
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas      1062 Nov 23 16:11 memory_monitor_summary.json
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas   1526164 Nov 23 16:11 agis_ddmendpoints.agis.ALL.json
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas   1992463 Nov 23 16:11 log.47556137._003425.job.log.tgz.1
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas      8672 Nov 23 16:11 heartbeat.json
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas        29 Nov 23 16:12 wrapper_checkpoint.txt
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 16:12 boinc_mmap_file
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas        95 Nov 23 16:12 pilot_heartbeat.json
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas       744 Nov 23 16:12 pilotlog.txt
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas   6243443 Nov 23 16:12 log.47556137._003425.job.log.1
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas       353 Nov 23 16:12 output.list
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas       620 Nov 23 16:12 runtime_log
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas   8253440 Nov 23 16:12 result.tar.gz
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas       668 Nov 23 16:12 vCHMDmXlzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmE7JKDmw17AAo.diag
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas      9343 Nov 23 16:12 runtime_log.err
[2025-11-23 16:12:23] -rw-r--r-- 1 boincer umatlas     21279 Nov 23 16:12 stderr.txt
[2025-11-23 16:12:23] HITS file was successfully produced:
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas 930939519 Nov 23 16:11 shared/HITS.pool.root.1
[2025-11-23 16:12:23]  *** Contents of shared directory: ***
[2025-11-23 16:12:23] total 1318040
[2025-11-23 16:12:23] -rw-r--r-- 2 boincer umatlas 409857749 Nov 23 03:34 ATLAS.root_0
[2025-11-23 16:12:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 03:34 start_atlas.sh
[2025-11-23 16:12:23] -rw-r--r-- 2 boincer umatlas    590095 Nov 23 03:34 input.tar.gz
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas 930939519 Nov 23 16:11 HITS.pool.root.1
[2025-11-23 16:12:23] -rw------- 1 boincer umatlas   8253440 Nov 23 16:12 result.tar.gz
16:12:25 (2090): run_atlas exited; CPU time 348956.674169
16:12:25 (2090): called boinc_finish(0)

</stderr_txt>
]]>

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