Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:12:20 (27030): wrapper (7.7.26015): starting
03:12:20 (27030): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 03:12:20] Arguments: --nthreads 8
[2025-11-26 03:12:20] Threads: 8
[2025-11-26 03:12:20] Checking for CVMFS
[2025-11-26 03:12:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:12:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:12:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:12:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:12:22] 2.11.2.0 11478 284704 141840 153304 0 271 21925923 25165824 1288 130560 9 141167919 99.878 81106113 3034 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 03:12:22] CVMFS is ok
[2025-11-26 03:12:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:12:22] Checking for apptainer binary...
[2025-11-26 03:12:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:12:22] Running /usr/bin/apptainer --version
[2025-11-26 03:12:22] apptainer version 1.3.2-1.el7
[2025-11-26 03:12:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:12:36] cg-vwn355.simple-grid.lan
[2025-11-26 03:12:36] apptainer works
[2025-11-26 03:12:36] Set ATHENA_PROC_NUMBER=8
[2025-11-26 03:12:36] Set ATHENA_CORE_NUMBER=8
[2025-11-26 03:12:36] Starting ATLAS job with PandaID=6895338733
[2025-11-26 03:12:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:35:25]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:35:25] 2025-11-27 01:34:37,714 | INFO     | monitor loop #5644: job 0:6895338733 is in state 'finished'
[2025-11-27 02:35:25] 2025-11-27 01:34:37,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:35:25] 2025-11-27 01:34:37,915 | INFO     | time since job start (83871s) is within the limit (172800.0s)
[2025-11-27 02:35:25] 2025-11-27 01:34:39,922 | INFO     | time since job start (83873s) is within the limit (172800.0s)
[2025-11-27 02:35:25] 2025-11-27 01:34:40,226 | INFO     | monitor loop #5645: job 0:6895338733 is in state 'finished'
[2025-11-27 02:35:25] 2025-11-27 01:34:40,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:35:25] 2025-11-27 01:34:41,172 | INFO     | PID=30812 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:35:25] 2025-11-27 01:34:41,173 | INFO     | .. there are 9 such processes running
[2025-11-27 02:35:25] 2025-11-27 01:34:42,181 | INFO     | time since job start (83876s) is within the limit (172800.0s)
[2025-11-27 02:35:25] 2025-11-27 01:34:42,732 | INFO     | monitor loop #5646: job 0:6895338733 is in state 'finished'
[2025-11-27 02:35:25] 2025-11-27 01:34:42,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:35:25] 2025-11-27 01:34:44,188 | INFO     | time since job start (83878s) is within the limit (172800.0s)
[2025-11-27 02:35:25] 2025-11-27 01:34:45,241 | INFO     | monitor loop #5647: job 0:6895338733 is in state 'finished'
[2025-11-27 02:35:25] 2025-11-27 01:34:45,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:35:25] 2025-11-27 01:34:46,195 | INFO     | time since job start (83880s) is within the limit (172800.0s)
[2025-11-27 02:35:25] 2025-11-27 01:34:47,259 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:35:25] 2025-11-27 01:34:47,260 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 02:35:25] 2025-11-27 01:34:47,262 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6895338733/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:35:25] 2025-11-27 01:34:47,262 | INFO     | extracted standard info from prmon json
[2025-11-27 02:35:25] 2025-11-27 01:34:47,263 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:35:25] 2025-11-27 01:34:47,263 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:35:25] 2025-11-27 01:34:47,304 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:35:25] 2025-11-27 01:34:47,307 | INFO     | sum of square deviations: 788634846580.3273
[2025-11-27 02:35:25] 2025-11-27 01:34:47,379 | INFO     | sum of deviations: 3335164069563.8765
[2025-11-27 02:35:25] 2025-11-27 01:34:47,379 | INFO     | mean x: 1764165534.0644689
[2025-11-27 02:35:25] 2025-11-27 01:34:47,379 | INFO     | mean y: 2828722.137728938
[2025-11-27 02:35:25] 2025-11-27 01:34:47,380 | INFO     | intersect: -7457888398.704693
[2025-11-27 02:35:25] 2025-11-27 01:34:47,381 | INFO     | chi2: 25.739751816739698
[2025-11-27 02:35:25] 2025-11-27 01:34:47,383 | INFO     | sum of square deviations: 780000672029.6309
[2025-11-27 02:35:25] 2025-11-27 01:34:47,446 | INFO     | sum of deviations: 3790796928725.4443
[2025-11-27 02:35:25] 2025-11-27 01:34:47,447 | INFO     | mean x: 1764165381.5683823
[2025-11-27 02:35:25] 2025-11-27 01:34:47,447 | INFO     | mean y: 2836768.8985294118
[2025-11-27 02:35:25] 2025-11-27 01:34:47,447 | INFO     | intersect: -8570992652.057566
[2025-11-27 02:35:25] 2025-11-27 01:34:47,449 | INFO     | chi2: 22.46364619152086
[2025-11-27 02:35:25] 2025-11-27 01:34:47,449 | INFO     | current chi2=22.46364619152086 (change=12.72780580226202 %)
[2025-11-27 02:35:25] 2025-11-27 01:34:47,449 | INFO     | right removable region: 1359
[2025-11-27 02:35:25] 2025-11-27 01:34:47,451 | INFO     | sum of square deviations: 779999785699.632
[2025-11-27 02:35:25] 2025-11-27 01:34:47,510 | INFO     | sum of deviations: 2751094890669.455
[2025-11-27 02:35:25] 2025-11-27 01:34:47,510 | INFO     | mean x: 1764165686.5683823
[2025-11-27 02:35:25] 2025-11-27 01:34:47,511 | INFO     | mean y: 2839037.247794118
[2025-11-27 02:35:25] 2025-11-27 01:34:47,511 | INFO     | intersect: -6219453962.819293
[2025-11-27 02:35:25] 2025-11-27 01:34:47,512 | INFO     | chi2: 20.724636471508212
[2025-11-27 02:35:25] 2025-11-27 01:34:47,513 | INFO     | current chi2=20.724636471508212 (change=19.48393046264702 %)
[2025-11-27 02:35:25] 2025-11-27 01:34:47,513 | INFO     | left removable region: 10
[2025-11-27 02:35:25] 2025-11-27 01:34:47,515 | INFO     | sum of square deviations: 761226052549.9835
[2025-11-27 02:35:25] 2025-11-27 01:34:47,577 | INFO     | sum of deviations: 2781172207353.5884
[2025-11-27 02:35:25] 2025-11-27 01:34:47,577 | INFO     | mean x: 1764165656.077094
[2025-11-27 02:35:25] 2025-11-27 01:34:47,577 | INFO     | mean y: 2858313.465530022
[2025-11-27 02:35:25] 2025-11-27 01:34:47,578 | INFO     | intersect: -6442596982.518518
[2025-11-27 02:35:25] 2025-11-27 01:34:47,579 | INFO     | chi2: 12.723362108229379
[2025-11-27 02:35:25] 2025-11-27 01:34:47,580 | INFO     | current memory leak: 3.65 B/s (using 1349 data points, chi2=12.72)
[2025-11-27 02:35:25] 2025-11-27 01:34:47,581 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 02:35:25] 2025-11-27 01:34:47,581 | INFO     | ..............................
[2025-11-27 02:35:25] 2025-11-27 01:34:47,581 | INFO     | . Timing measurements:
[2025-11-27 02:35:25] 2025-11-27 01:34:47,581 | INFO     | . get job = 0 s
[2025-11-27 02:35:25] 2025-11-27 01:34:47,581 | INFO     | . initial setup = 5 s
[2025-11-27 02:35:25] 2025-11-27 01:34:47,581 | INFO     | . payload setup = 168 s
[2025-11-27 02:35:25] 2025-11-27 01:34:47,582 | INFO     | . stage-in = 0 s
[2025-11-27 02:35:25] 2025-11-27 01:34:47,582 | INFO     | . payload execution = 83407 s
[2025-11-27 02:35:25] 2025-11-27 01:34:47,582 | INFO     | . stage-out = 5 s
[2025-11-27 02:35:25] 2025-11-27 01:34:47,582 | INFO     | . log creation = 2 s
[2025-11-27 02:35:25] 2025-11-27 01:34:47,582 | INFO     | ..............................
[2025-11-27 02:35:25] 2025-11-27 01:34:47,702 | INFO     | 
[2025-11-27 02:35:25] 2025-11-27 01:34:47,702 | INFO     | job summary report
[2025-11-27 02:35:25] 2025-11-27 01:34:47,703 | INFO     | --------------------------------------------------
[2025-11-27 02:35:25] 2025-11-27 01:34:47,703 | INFO     | PanDA job id: 6895338733
[2025-11-27 02:35:25] 2025-11-27 01:34:47,703 | INFO     | task id: 47556137
[2025-11-27 02:35:25] 2025-11-27 01:34:47,703 | INFO     | errors: (none)
[2025-11-27 02:35:25] 2025-11-27 01:34:47,703 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:35:25] 2025-11-27 01:34:47,703 | INFO     | pilot state: finished 
[2025-11-27 02:35:25] 2025-11-27 01:34:47,703 | INFO     | transexitcode: 0
[2025-11-27 02:35:25] 2025-11-27 01:34:47,704 | INFO     | exeerrorcode: 0
[2025-11-27 02:35:25] 2025-11-27 01:34:47,704 | INFO     | exeerrordiag: 
[2025-11-27 02:35:25] 2025-11-27 01:34:47,704 | INFO     | exitcode: 0
[2025-11-27 02:35:25] 2025-11-27 01:34:47,704 | INFO     | exitmsg: OK
[2025-11-27 02:35:25] 2025-11-27 01:34:47,704 | INFO     | cpuconsumptiontime: 313343 s
[2025-11-27 02:35:25] 2025-11-27 01:34:47,704 | INFO     | nevents: 1000
[2025-11-27 02:35:25] 2025-11-27 01:34:47,704 | INFO     | neventsw: 0
[2025-11-27 02:35:25] 2025-11-27 01:34:47,704 | INFO     | pid: 5003
[2025-11-27 02:35:25] 2025-11-27 01:34:47,704 | INFO     | pgrp: 5003
[2025-11-27 02:35:25] 2025-11-27 01:34:47,705 | INFO     | corecount: 8
[2025-11-27 02:35:25] 2025-11-27 01:34:47,705 | INFO     | event service: False
[2025-11-27 02:35:25] 2025-11-27 01:34:47,705 | INFO     | sizes: {0: 2283435, 1: 2284291, 2: 2284319, 12: 2284319, 23: 2284347, 34: 2284375, 45: 2284531, 55: 2284559, 66: 2284587, 77: 2284615, 88: 2284671, 98: 2284979, 10
[2025-11-27 02:35:25] 2025-11-27 01:34:47,705 | INFO     | --------------------------------------------------
[2025-11-27 02:35:25] 2025-11-27 01:34:47,705 | INFO     | 
[2025-11-27 02:35:25] 2025-11-27 01:34:47,705 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-27 02:35:25] 2025-11-27 01:34:48,202 | INFO     | time since job start (83882s) is within the limit (172800.0s)
[2025-11-27 02:35:25] 2025-11-27 01:34:48,233 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,233 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,233 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,233 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,233 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,233 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,234 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,234 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,234 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,234 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,234 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,234 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,234 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,235 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,235 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,235 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:35:25] 2025-11-27 01:34:48,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,235 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:35:25] 2025-11-27 01:34:48,236 | INFO     | job 6895338733 has completed (purged errors)
[2025-11-27 02:35:25] 2025-11-27 01:34:48,236 | INFO     | overall cleanup function is called
[2025-11-27 02:35:25] 2025-11-27 01:34:49,258 | INFO     | --- collectZombieJob: --- 10, [5003]
[2025-11-27 02:35:25] 2025-11-27 01:34:49,258 | INFO     | zombie collector waiting for pid 5003
[2025-11-27 02:35:25] 2025-11-27 01:34:49,259 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:35:25] 2025-11-27 01:34:49,259 | INFO     | collected zombie processes
[2025-11-27 02:35:25] 2025-11-27 01:34:49,259 | INFO     | will attempt to kill all subprocesses of pid=5003
[2025-11-27 02:35:25] 2025-11-27 01:34:49,393 | INFO     | process IDs to be killed: [5003] (in reverse order)
[2025-11-27 02:35:25] 2025-11-27 01:34:50,285 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:35:25] 2025-11-27 01:34:50,286 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:35:25] 2025-11-27 01:34:50,289 | INFO     | did not find any defunct processes belonging to 5003
[2025-11-27 02:35:25] 2025-11-27 01:34:50,291 | INFO     | did not find any defunct processes belonging to 5003
[2025-11-27 02:35:25] 2025-11-27 01:34:50,308 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:35:25] 2025-11-27 01:34:50,309 | INFO     | ready for new job
[2025-11-27 02:35:25] 2025-11-27 01:34:50,309 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:35:25] 2025-11-27 01:34:50,314 | INFO     | ***************************************
[2025-11-27 02:35:25] 2025-11-27 01:34:50,314 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:35:25] 2025-11-27 01:34:50,314 | INFO     | ***************************************
[2025-11-27 02:35:25] 2025-11-27 01:34:50,315 | INFO     | 
[2025-11-27 02:35:25] 2025-11-27 01:34:50,315 | INFO     | pilot is running in a VM
[2025-11-27 02:35:25] 2025-11-27 01:34:50,315 | INFO     | architecture information:
[2025-11-27 02:35:25] 2025-11-27 01:34:50,319 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:35:25] 2025-11-27 01:34:50,506 | INFO     | cat /etc/os-release:
[2025-11-27 02:35:25] NAME="CentOS Linux"
[2025-11-27 02:35:25] VERSION="7 (Core)"
[2025-11-27 02:35:25] ID="centos"
[2025-11-27 02:35:25] ID_LIKE="rhel fedora"
[2025-11-27 02:35:25] VERSION_ID="7"
[2025-11-27 02:35:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:35:25] ANSI_COLOR="0;31"
[2025-11-27 02:35:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:35:25] HOME_URL="https://www.centos.org/"
[2025-11-27 02:35:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:35:25] 
[2025-11-27 02:35:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:35:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:35:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:35:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:35:25] 
[2025-11-27 02:35:25] 2025-11-27 01:34:50,506 | INFO     | ***************************************
[2025-11-27 02:35:25] 2025-11-27 01:34:51,009 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-27 02:35:25] 2025-11-27 01:34:51,321 | INFO     | sufficient remaining disk space (495177433088 B)
[2025-11-27 02:35:25] 2025-11-27 01:34:51,321 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:35:25] 2025-11-27 01:34:51,321 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:35:25] 2025-11-27 01:34:51,321 | INFO     | update_server=False
[2025-11-27 02:35:25] 2025-11-27 01:34:51,321 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:35:25] 2025-11-27 01:34:51,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:35:25] 2025-11-27 01:34:51,322 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:35:25] 2025-11-27 01:34:51,322 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:35:25] 2025-11-27 01:34:51,323 | INFO     | aborting loop
[2025-11-27 02:35:25] 2025-11-27 01:34:51,518 | INFO     | all job control threads have been joined
[2025-11-27 02:35:25] 2025-11-27 01:34:51,947 | INFO     | all data control threads have been joined
[2025-11-27 02:35:25] 2025-11-27 01:34:52,118 | INFO     | all payload control threads have been joined
[2025-11-27 02:35:25] 2025-11-27 01:34:52,327 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,328 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,524 | INFO     | [job] control thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,638 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,662 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:35:25] 2025-11-27 01:34:52,810 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,845 | INFO     | [job] validate thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,953 | INFO     | [data] control thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,981 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,986 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:52,995 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:53,124 | INFO     | [payload] control thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:53,328 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:53,416 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:53,725 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:34:55,331 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:35:25] 2025-11-27 01:35:12,432 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:35:25] 2025-11-27 01:35:14,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139841229309760)>', '<ExcThread(monitor, started 139840561600256)>']
[2025-11-27 02:35:25] 2025-11-27 01:35:19,189 | INFO     | all workflow threads have been joined
[2025-11-27 02:35:25] 2025-11-27 01:35:19,189 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:35:25] 2025-11-27 01:35:19,190 | INFO     | traces error code: 0
[2025-11-27 02:35:25] 2025-11-27 01:35:19,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:35:25] 2025-11-27 01:35:21,380 | INFO     | PID=30812 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:35:25] 2025-11-27 01:35:21,381 | INFO     | .. there are 9 such processes running
[2025-11-27 02:35:25] 2025-11-27 01:35:21,382 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:35:25] 2025-11-27 01:35:21,382 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:35:25] 2025-11-27 01:35:21,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:35:25] 2025-11-27 01:35:21,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:35:25] 2025-11-27 01:35:21,383 | INFO     | [monitor] control thread has ended
[2025-11-27 02:35:25] 2025-11-27 01:35:21,679 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:35:25] 2025-11-27 01:35:21,752 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:35:25] 2025-11-27 01:35:21,811 [wrapper] pilotpid: 30812
[2025-11-27 02:35:25] 2025-11-27 01:35:21,825 [wrapper] Pilot exit status: 0
[2025-11-27 02:35:25] 2025-11-27 01:35:22,161 [wrapper] pandaids: 6895338733
[2025-11-27 02:35:25] 2025-11-27 01:35:23,224 [wrapper] cleanup supervisor_pilot  8031 30813
[2025-11-27 02:35:25] 2025-11-27 01:35:23,257 [wrapper] Test setup, not cleaning
[2025-11-27 02:35:25] 2025-11-27 01:35:23,290 [wrapper] apfmon messages muted
[2025-11-27 02:35:25] 2025-11-27 01:35:23,315 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:35:25] 2025-11-27 01:35:23,341 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:35:25]  *** Error codes and diagnostics ***
[2025-11-27 02:35:25]     "exeErrorCode": 0,
[2025-11-27 02:35:25]     "exeErrorDiag": "",
[2025-11-27 02:35:25]     "pilotErrorCode": 0,
[2025-11-27 02:35:25]     "pilotErrorDiag": "",
[2025-11-27 02:35:25]  *** Listing of results directory ***
[2025-11-27 02:35:25] total 1316876
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc    576529 Nov 22 10:55 pilot3.tar.gz
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc      5112 Nov 22 10:57 queuedata.json
[2025-11-27 02:35:25] -rwx------. 1 boinc boinc     36292 Nov 22 10:58 runpilot2-wrapper.sh
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc       100 Nov 26 03:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:35:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 03:12 run_atlas
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc       105 Nov 26 03:12 job.xml
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc      6392 Nov 26 03:12 init_data.xml
[2025-11-27 02:35:25] -rw-r--r--. 2 boinc boinc 408908609 Nov 26 03:12 EVNT.47483658._000340.pool.root.1
[2025-11-27 02:35:25] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:12 start_atlas.sh
[2025-11-27 02:35:25] drwxrwx--x. 2 boinc boinc        68 Nov 26 03:12 shared
[2025-11-27 02:35:25] -rw-r--r--. 2 boinc boinc    590103 Nov 26 03:12 input.tar.gz
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc         0 Nov 26 03:12 boinc_lockfile
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc      2784 Nov 26 03:12 pandaJob.out
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc    991877 Nov 26 03:16 agis_schedconf.cvmfs.json
[2025-11-27 02:35:25] drwx------. 5 boinc boinc      4096 Nov 26 03:16 pilot3
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc       533 Nov 27 02:07 boinc_task_state.xml
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc 908430821 Nov 27 02:31 HITS.47556137._003369.pool.root.1
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc      1029 Nov 27 02:32 memory_monitor_summary.json
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc   1516240 Nov 27 02:33 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc   2450891 Nov 27 02:33 log.47556137._003369.job.log.tgz.1
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc      8625 Nov 27 02:34 heartbeat.json
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc        95 Nov 27 02:35 pilot_heartbeat.json
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc       820 Nov 27 02:35 pilotlog.txt
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc  11168565 Nov 27 02:35 log.47556137._003369.job.log.1
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc      8192 Nov 27 02:35 boinc_mmap_file
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc        29 Nov 27 02:35 wrapper_checkpoint.txt
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc       353 Nov 27 02:35 output.list
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc       620 Nov 27 02:35 runtime_log
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc  13639680 Nov 27 02:35 result.tar.gz
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc      8817 Nov 27 02:35 runtime_log.err
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc       662 Nov 27 02:35 C5LODmaZzg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmC4HKDmB5Qiwn.diag
[2025-11-27 02:35:25] -rw-r--r--. 1 boinc boinc     21494 Nov 27 02:35 stderr.txt
[2025-11-27 02:35:25] HITS file was successfully produced:
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc 908430821 Nov 27 02:31 shared/HITS.pool.root.1
[2025-11-27 02:35:25]  *** Contents of shared directory: ***
[2025-11-27 02:35:25] total 1300384
[2025-11-27 02:35:25] -rw-r--r--. 2 boinc boinc 408908609 Nov 26 03:12 ATLAS.root_0
[2025-11-27 02:35:25] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:12 start_atlas.sh
[2025-11-27 02:35:25] -rw-r--r--. 2 boinc boinc    590103 Nov 26 03:12 input.tar.gz
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc 908430821 Nov 27 02:31 HITS.pool.root.1
[2025-11-27 02:35:25] -rw-------. 1 boinc boinc  13639680 Nov 27 02:35 result.tar.gz
02:35:26 (27030): run_atlas exited; CPU time 313919.347712
02:35:26 (27030): called boinc_finish(0)

</stderr_txt>
]]>

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