Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:08:43 (30906): wrapper (7.7.26015): starting
23:08:43 (30906): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:08:43] Arguments: --nthreads 8
[2025-11-25 23:08:43] Threads: 8
[2025-11-25 23:08:43] Checking for CVMFS
[2025-11-25 23:08:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:08:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:08:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:08:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:08:46] 2.11.2.0 2048 171316 138952 153298 1 289 15832103 25165825 4214 130560 10 57208073 99.874 31512271 2216 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 23:08:46] CVMFS is ok
[2025-11-25 23:08:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:08:46] Checking for apptainer binary...
[2025-11-25 23:08:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:08:46] Running /usr/bin/apptainer --version
[2025-11-25 23:08:46] apptainer version 1.3.2-1.el7
[2025-11-25 23:08:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:08:59] cg-vwn398.simple-grid.lan
[2025-11-25 23:08:59] apptainer works
[2025-11-25 23:08:59] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:08:59] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:08:59] Starting ATLAS job with PandaID=6895338707
[2025-11-25 23:08:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:17:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:17:25] 2025-11-26 20:16:11,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:25] 2025-11-26 20:16:13,331 | INFO     | time since job start (79396s) is within the limit (172800.0s)
[2025-11-26 21:17:25] 2025-11-26 20:16:14,007 | INFO     | monitor loop #5360: job 0:6895338707 is in state 'finished'
[2025-11-26 21:17:25] 2025-11-26 20:16:14,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:25] 2025-11-26 20:16:15,338 | INFO     | time since job start (79398s) is within the limit (172800.0s)
[2025-11-26 21:17:25] 2025-11-26 20:16:16,511 | INFO     | monitor loop #5361: job 0:6895338707 is in state 'finished'
[2025-11-26 21:17:25] 2025-11-26 20:16:16,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:25] 2025-11-26 20:16:17,348 | INFO     | time since job start (79400s) is within the limit (172800.0s)
[2025-11-26 21:17:25] 2025-11-26 20:16:19,020 | INFO     | monitor loop #5362: job 0:6895338707 is in state 'finished'
[2025-11-26 21:17:25] 2025-11-26 20:16:19,020 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:25] 2025-11-26 20:16:19,356 | INFO     | time since job start (79402s) is within the limit (172800.0s)
[2025-11-26 21:17:25] 2025-11-26 20:16:20,550 | INFO     | PID=2358 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 21:17:25] 2025-11-26 20:16:20,550 | INFO     | .. there are 9 such processes running
[2025-11-26 21:17:25] 2025-11-26 20:16:21,531 | INFO     | monitor loop #5363: job 0:6895338707 is in state 'finished'
[2025-11-26 21:17:25] 2025-11-26 20:16:21,531 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:25] 2025-11-26 20:16:21,532 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 21:17:25] 2025-11-26 20:16:21,532 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 21:17:25] 2025-11-26 20:16:21,534 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895338707/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:17:25] 2025-11-26 20:16:21,535 | INFO     | extracted standard info from prmon json
[2025-11-26 21:17:25] 2025-11-26 20:16:21,535 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:17:25] 2025-11-26 20:16:21,535 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:17:25] 2025-11-26 20:16:21,558 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:17:25] 2025-11-26 20:16:21,560 | INFO     | sum of square deviations: 667194948685.9396
[2025-11-26 21:17:25] 2025-11-26 20:16:21,589 | INFO     | time since job start (79404s) is within the limit (172800.0s)
[2025-11-26 21:17:25] 2025-11-26 20:16:21,615 | INFO     | sum of deviations: 3600738558769.419
[2025-11-26 21:17:25] 2025-11-26 20:16:21,615 | INFO     | mean x: 1764148666.02866
[2025-11-26 21:17:25] 2025-11-26 20:16:21,615 | INFO     | mean y: 2819226.1239349344
[2025-11-26 21:17:25] 2025-11-26 20:16:21,616 | INFO     | intersect: -9517993450.41379
[2025-11-26 21:17:25] 2025-11-26 20:16:21,617 | INFO     | chi2: 22.662309294018044
[2025-11-26 21:17:25] 2025-11-26 20:16:21,619 | INFO     | sum of square deviations: 659473190328.1279
[2025-11-26 21:17:25] 2025-11-26 20:16:21,663 | INFO     | sum of deviations: 4039037883182.824
[2025-11-26 21:17:25] 2025-11-26 20:16:21,664 | INFO     | mean x: 1764148513.5326593
[2025-11-26 21:17:25] 2025-11-26 20:16:21,664 | INFO     | mean y: 2827881.7185069984
[2025-11-26 21:17:25] 2025-11-26 20:16:21,664 | INFO     | intersect: -10801952027.793398
[2025-11-26 21:17:25] 2025-11-26 20:16:21,665 | INFO     | chi2: 19.310686689853576
[2025-11-26 21:17:25] 2025-11-26 20:16:21,666 | INFO     | current chi2=19.310686689853576 (change=14.789413385374475 %)
[2025-11-26 21:17:25] 2025-11-26 20:16:21,666 | INFO     | right removable region: 1285
[2025-11-26 21:17:25] 2025-11-26 20:16:21,667 | INFO     | sum of square deviations: 659472380248.1284
[2025-11-26 21:17:25] 2025-11-26 20:16:21,722 | INFO     | sum of deviations: 3058105853655.607
[2025-11-26 21:17:25] 2025-11-26 20:16:21,723 | INFO     | mean x: 1764148818.5326593
[2025-11-26 21:17:25] 2025-11-26 20:16:21,723 | INFO     | mean y: 2829941.3903576983
[2025-11-26 21:17:25] 2025-11-26 20:16:21,723 | INFO     | intersect: -8177882382.974889
[2025-11-26 21:17:25] 2025-11-26 20:16:21,725 | INFO     | chi2: 17.74351294535583
[2025-11-26 21:17:25] 2025-11-26 20:16:21,725 | INFO     | current chi2=17.74351294535583 (change=21.70474458205627 %)
[2025-11-26 21:17:25] 2025-11-26 20:16:21,725 | INFO     | left removable region: 10
[2025-11-26 21:17:25] 2025-11-26 20:16:21,730 | INFO     | sum of square deviations: 642693923396.7968
[2025-11-26 21:17:25] 2025-11-26 20:16:21,779 | INFO     | sum of deviations: 3105321980202.1523
[2025-11-26 21:17:25] 2025-11-26 20:16:21,779 | INFO     | mean x: 1764148788.0415685
[2025-11-26 21:17:25] 2025-11-26 20:16:21,779 | INFO     | mean y: 2850647.242352941
[2025-11-26 21:17:25] 2025-11-26 20:16:21,779 | INFO     | intersect: -8521035775.860205
[2025-11-26 21:17:25] 2025-11-26 20:16:21,781 | INFO     | chi2: 9.489436987486
[2025-11-26 21:17:25] 2025-11-26 20:16:21,781 | INFO     | current memory leak: 4.83 B/s (using 1275 data points, chi2=9.49)
[2025-11-26 21:17:25] 2025-11-26 20:16:21,782 | INFO     | could have reported an average CPU frequency of 1999 MHz (44 samples)
[2025-11-26 21:17:25] 2025-11-26 20:16:21,782 | INFO     | ..............................
[2025-11-26 21:17:25] 2025-11-26 20:16:21,782 | INFO     | . Timing measurements:
[2025-11-26 21:17:25] 2025-11-26 20:16:21,782 | INFO     | . get job = 0 s
[2025-11-26 21:17:25] 2025-11-26 20:16:21,783 | INFO     | . initial setup = 6 s
[2025-11-26 21:17:25] 2025-11-26 20:16:21,783 | INFO     | . payload setup = 174 s
[2025-11-26 21:17:25] 2025-11-26 20:16:21,783 | INFO     | . stage-in = 0 s
[2025-11-26 21:17:25] 2025-11-26 20:16:21,783 | INFO     | . payload execution = 78914 s
[2025-11-26 21:17:25] 2025-11-26 20:16:21,783 | INFO     | . stage-out = 5 s
[2025-11-26 21:17:25] 2025-11-26 20:16:21,783 | INFO     | . log creation = 2 s
[2025-11-26 21:17:25] 2025-11-26 20:16:21,783 | INFO     | ..............................
[2025-11-26 21:17:25] 2025-11-26 20:16:21,887 | INFO     | 
[2025-11-26 21:17:25] 2025-11-26 20:16:21,887 | INFO     | job summary report
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | --------------------------------------------------
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | PanDA job id: 6895338707
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | task id: 47556137
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | errors: (none)
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | pilot state: finished 
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | transexitcode: 0
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | exeerrorcode: 0
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | exeerrordiag: 
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | exitcode: 0
[2025-11-26 21:17:25] 2025-11-26 20:16:21,888 | INFO     | exitmsg: OK
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | cpuconsumptiontime: 324598 s
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | nevents: 1000
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | neventsw: 0
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | pid: 8912
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | pgrp: 8912
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | corecount: 8
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | event service: False
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | sizes: {0: 2283435, 1: 2284292, 2: 2284320, 13: 2284320, 23: 2284376, 34: 2284404, 45: 2284560, 56: 2284588, 67: 2284616, 77: 2284644, 88: 2284700, 99: 2285270, 11
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | --------------------------------------------------
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | 
[2025-11-26 21:17:25] 2025-11-26 20:16:21,889 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-26 21:17:25] 2025-11-26 20:16:22,418 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,419 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,419 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,419 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,419 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,419 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,419 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,419 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,420 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,420 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,420 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,420 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,420 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,420 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,420 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,421 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,421 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:17:25] 2025-11-26 20:16:22,421 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,421 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:17:25] 2025-11-26 20:16:22,421 | INFO     | job 6895338707 has completed (purged errors)
[2025-11-26 21:17:25] 2025-11-26 20:16:22,421 | INFO     | overall cleanup function is called
[2025-11-26 21:17:25] 2025-11-26 20:16:23,439 | INFO     | --- collectZombieJob: --- 10, [8912]
[2025-11-26 21:17:25] 2025-11-26 20:16:23,439 | INFO     | zombie collector waiting for pid 8912
[2025-11-26 21:17:25] 2025-11-26 20:16:23,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:17:25] 2025-11-26 20:16:23,439 | INFO     | collected zombie processes
[2025-11-26 21:17:25] 2025-11-26 20:16:23,439 | INFO     | will attempt to kill all subprocesses of pid=8912
[2025-11-26 21:17:25] 2025-11-26 20:16:23,555 | INFO     | process IDs to be killed: [8912] (in reverse order)
[2025-11-26 21:17:25] 2025-11-26 20:16:24,700 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:17:25] 2025-11-26 20:16:24,700 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:17:25] 2025-11-26 20:16:24,703 | INFO     | did not find any defunct processes belonging to 8912
[2025-11-26 21:17:25] 2025-11-26 20:16:24,705 | INFO     | did not find any defunct processes belonging to 8912
[2025-11-26 21:17:25] 2025-11-26 20:16:24,750 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:17:25] 2025-11-26 20:16:24,751 | INFO     | ready for new job
[2025-11-26 21:17:25] 2025-11-26 20:16:24,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:17:25] 2025-11-26 20:16:24,756 | INFO     | ***************************************
[2025-11-26 21:17:25] 2025-11-26 20:16:24,756 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:17:25] 2025-11-26 20:16:24,756 | INFO     | ***************************************
[2025-11-26 21:17:25] 2025-11-26 20:16:24,756 | INFO     | 
[2025-11-26 21:17:25] 2025-11-26 20:16:24,757 | INFO     | pilot is running in a VM
[2025-11-26 21:17:25] 2025-11-26 20:16:24,757 | INFO     | architecture information:
[2025-11-26 21:17:25] 2025-11-26 20:16:24,762 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:17:25] 2025-11-26 20:16:24,956 | INFO     | cat /etc/os-release:
[2025-11-26 21:17:25] NAME="CentOS Linux"
[2025-11-26 21:17:25] VERSION="7 (Core)"
[2025-11-26 21:17:25] ID="centos"
[2025-11-26 21:17:25] ID_LIKE="rhel fedora"
[2025-11-26 21:17:25] VERSION_ID="7"
[2025-11-26 21:17:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:17:25] ANSI_COLOR="0;31"
[2025-11-26 21:17:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:17:25] HOME_URL="https://www.centos.org/"
[2025-11-26 21:17:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:17:25] 
[2025-11-26 21:17:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:17:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:17:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:17:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:17:25] 
[2025-11-26 21:17:25] 2025-11-26 20:16:24,957 | INFO     | ***************************************
[2025-11-26 21:17:25] 2025-11-26 20:16:25,460 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-26 21:17:25] 2025-11-26 20:16:25,710 | INFO     | sufficient remaining disk space (496034119680 B)
[2025-11-26 21:17:25] 2025-11-26 20:16:25,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:17:25] 2025-11-26 20:16:25,710 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:17:25] 2025-11-26 20:16:25,710 | INFO     | update_server=False
[2025-11-26 21:17:25] 2025-11-26 20:16:25,710 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:17:25] 2025-11-26 20:16:25,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:17:25] 2025-11-26 20:16:25,711 | INFO     | aborting loop
[2025-11-26 21:17:25] 2025-11-26 20:16:25,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:17:25] 2025-11-26 20:16:25,869 | INFO     | all payload control threads have been joined
[2025-11-26 21:17:25] 2025-11-26 20:16:26,452 | INFO     | all job control threads have been joined
[2025-11-26 21:17:25] 2025-11-26 20:16:26,631 | INFO     | all data control threads have been joined
[2025-11-26 21:17:25] 2025-11-26 20:16:26,716 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:26,717 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:26,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:17:25] 2025-11-26 20:16:26,774 | INFO     | [job] validate thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:26,875 | INFO     | [payload] control thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:26,902 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:17:25] 2025-11-26 20:16:26,962 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:27,041 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:27,279 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:27,446 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:27,458 | INFO     | [job] control thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:27,637 | INFO     | [data] control thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:27,724 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:27,865 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:27,908 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:27,949 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:28,089 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:30,775 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:17:25] 2025-11-26 20:16:54,761 | INFO     | PID=2358 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 21:17:25] 2025-11-26 20:16:54,761 | INFO     | .. there are 9 such processes running
[2025-11-26 21:17:25] 2025-11-26 20:16:54,761 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:17:25] 2025-11-26 20:16:54,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:17:25] 2025-11-26 20:16:54,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:17:25] 2025-11-26 20:17:14,887 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:17:25] 2025-11-26 20:17:15,686 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140121845573440)>', '<ExcThread(monitor, started 140121403803392)>']
[2025-11-26 21:17:25] 2025-11-26 20:17:15,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:17:25] 2025-11-26 20:17:15,886 | INFO     | [monitor] control thread has ended
[2025-11-26 21:17:25] 2025-11-26 20:17:20,712 | INFO     | all workflow threads have been joined
[2025-11-26 21:17:25] 2025-11-26 20:17:20,712 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:17:25] 2025-11-26 20:17:20,713 | INFO     | traces error code: 0
[2025-11-26 21:17:25] 2025-11-26 20:17:20,713 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:17:25] 2025-11-26 20:17:21,068 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:17:25] 2025-11-26 20:17:21,171 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:17:25] 2025-11-26 20:17:21,288 [wrapper] pilotpid: 2358
[2025-11-26 21:17:25] 2025-11-26 20:17:21,350 [wrapper] Pilot exit status: 0
[2025-11-26 21:17:25] 2025-11-26 20:17:21,664 [wrapper] pandaids: 6895338707
[2025-11-26 21:17:25] 2025-11-26 20:17:22,289 [wrapper] cleanup supervisor_pilot 22939 2359
[2025-11-26 21:17:25] 2025-11-26 20:17:22,357 [wrapper] Test setup, not cleaning
[2025-11-26 21:17:25] 2025-11-26 20:17:22,489 [wrapper] apfmon messages muted
[2025-11-26 21:17:25] 2025-11-26 20:17:22,603 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:17:25] 2025-11-26 20:17:22,669 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:17:25]  *** Error codes and diagnostics ***
[2025-11-26 21:17:25]     "exeErrorCode": 0,
[2025-11-26 21:17:25]     "exeErrorDiag": "",
[2025-11-26 21:17:25]     "pilotErrorCode": 0,
[2025-11-26 21:17:25]     "pilotErrorDiag": "",
[2025-11-26 21:17:25]  *** Listing of results directory ***
[2025-11-26 21:17:25] total 1334016
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc    576529 Nov 22 10:55 pilot3.tar.gz
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc      5112 Nov 22 10:57 queuedata.json
[2025-11-26 21:17:25] -rwx------. 1 boinc boinc     36292 Nov 22 10:57 runpilot2-wrapper.sh
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc       100 Nov 25 23:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:17:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 23:08 run_atlas
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc       105 Nov 25 23:08 job.xml
[2025-11-26 21:17:25] -rw-r--r--. 2 boinc boinc 410005264 Nov 25 23:08 EVNT.47483658._000338.pool.root.1
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc      6392 Nov 25 23:08 init_data.xml
[2025-11-26 21:17:25] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:08 start_atlas.sh
[2025-11-26 21:17:25] drwxrwx--x. 2 boinc boinc        68 Nov 25 23:08 shared
[2025-11-26 21:17:25] -rw-r--r--. 2 boinc boinc    590100 Nov 25 23:08 input.tar.gz
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc         0 Nov 25 23:08 boinc_lockfile
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc      2784 Nov 25 23:08 pandaJob.out
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc    991893 Nov 25 23:12 agis_schedconf.cvmfs.json
[2025-11-26 21:17:25] drwx------. 5 boinc boinc      4096 Nov 25 23:12 pilot3
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc       533 Nov 26 20:55 boinc_task_state.xml
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc 926117822 Nov 26 21:13 HITS.47556137._003343.pool.root.1
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc      1031 Nov 26 21:14 memory_monitor_summary.json
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc   1516240 Nov 26 21:14 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc   2408634 Nov 26 21:14 log.47556137._003343.job.log.tgz.1
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc        95 Nov 26 21:16 pilot_heartbeat.json
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc      7943 Nov 26 21:16 heartbeat.json
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc      8192 Nov 26 21:17 boinc_mmap_file
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc        29 Nov 26 21:17 wrapper_checkpoint.txt
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc      4884 Nov 26 21:17 pilotlog.txt
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc  10593214 Nov 26 21:17 log.47556137._003343.job.log.1
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc       353 Nov 26 21:17 output.list
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc       620 Nov 26 21:17 runtime_log
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc  13025280 Nov 26 21:17 result.tar.gz
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc      8833 Nov 26 21:17 runtime_log.err
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc       662 Nov 26 21:17 nAgLDmUYzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG6JKDmHmumfm.diag
[2025-11-26 21:17:25] -rw-r--r--. 1 boinc boinc     21509 Nov 26 21:17 stderr.txt
[2025-11-26 21:17:25] HITS file was successfully produced:
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc 926117822 Nov 26 21:13 shared/HITS.pool.root.1
[2025-11-26 21:17:25]  *** Contents of shared directory: ***
[2025-11-26 21:17:25] total 1318124
[2025-11-26 21:17:25] -rw-r--r--. 2 boinc boinc 410005264 Nov 25 23:08 ATLAS.root_0
[2025-11-26 21:17:25] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:08 start_atlas.sh
[2025-11-26 21:17:25] -rw-r--r--. 2 boinc boinc    590100 Nov 25 23:08 input.tar.gz
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc 926117822 Nov 26 21:13 HITS.pool.root.1
[2025-11-26 21:17:25] -rw-------. 1 boinc boinc  13025280 Nov 26 21:17 result.tar.gz
21:17:26 (30906): run_atlas exited; CPU time 325121.859280
21:17:26 (30906): called boinc_finish(0)

</stderr_txt>
]]>

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