Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:10:21 (28175): wrapper (7.7.26015): starting
00:10:21 (28175): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:10:21] Arguments: --nthreads 8
[2025-11-26 00:10:21] Threads: 8
[2025-11-26 00:10:21] Checking for CVMFS
[2025-11-26 00:10:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:24] 2.11.2.0 17186 284576 140136 153301 3 246 18789314 25165825 3378 130560 14 141112634 99.887 75666639 2874 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 00:10:24] CVMFS is ok
[2025-11-26 00:10:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:24] Checking for apptainer binary...
[2025-11-26 00:10:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:24] Running /usr/bin/apptainer --version
[2025-11-26 00:10:24] apptainer version 1.3.2-1.el7
[2025-11-26 00:10:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:43] cg-vwn311.simple-grid.lan
[2025-11-26 00:10:43] apptainer works
[2025-11-26 00:10:43] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:10:43] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:10:43] Starting ATLAS job with PandaID=6895338715
[2025-11-26 00:10:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:37:16]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:37:16] 2025-11-26 23:36:08,385 | INFO     | monitor loop #5896: job 0:6895338715 is in state 'finished'
[2025-11-27 00:37:16] 2025-11-26 23:36:08,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:16] 2025-11-26 23:36:10,113 | INFO     | time since job start (87697s) is within the limit (172800.0s)
[2025-11-27 00:37:16] 2025-11-26 23:36:10,891 | INFO     | monitor loop #5897: job 0:6895338715 is in state 'finished'
[2025-11-27 00:37:16] 2025-11-26 23:36:10,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:16] 2025-11-26 23:36:12,121 | INFO     | time since job start (87699s) is within the limit (172800.0s)
[2025-11-27 00:37:16] 2025-11-26 23:36:13,395 | INFO     | monitor loop #5898: job 0:6895338715 is in state 'finished'
[2025-11-27 00:37:16] 2025-11-26 23:36:13,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:16] 2025-11-26 23:36:14,128 | INFO     | time since job start (87701s) is within the limit (172800.0s)
[2025-11-27 00:37:16] 2025-11-26 23:36:15,900 | INFO     | monitor loop #5899: job 0:6895338715 is in state 'finished'
[2025-11-27 00:37:16] 2025-11-26 23:36:15,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:16] 2025-11-26 23:36:16,134 | INFO     | time since job start (87703s) is within the limit (172800.0s)
[2025-11-27 00:37:16] 2025-11-26 23:36:18,144 | INFO     | time since job start (87705s) is within the limit (172800.0s)
[2025-11-27 00:37:16] 2025-11-26 23:36:18,407 | INFO     | monitor loop #5900: job 0:6895338715 is in state 'finished'
[2025-11-27 00:37:16] 2025-11-26 23:36:18,407 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:37:16] 2025-11-26 23:36:19,993 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 00:37:16] 2025-11-26 23:36:19,994 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 00:37:16] 2025-11-26 23:36:19,996 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6895338715/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:37:16] 2025-11-26 23:36:19,997 | INFO     | extracted standard info from prmon json
[2025-11-27 00:37:16] 2025-11-26 23:36:19,997 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:37:16] 2025-11-26 23:36:19,997 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:37:16] 2025-11-26 23:36:20,038 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:37:16] 2025-11-26 23:36:20,041 | INFO     | sum of square deviations: 902944076741.291
[2025-11-27 00:37:16] 2025-11-26 23:36:20,129 | INFO     | sum of deviations: 2233542397282.327
[2025-11-27 00:37:16] 2025-11-26 23:36:20,130 | INFO     | mean x: 1764156528.6288517
[2025-11-27 00:37:16] 2025-11-26 23:36:20,130 | INFO     | mean y: 2854276.8949579834
[2025-11-27 00:37:16] 2025-11-26 23:36:20,130 | INFO     | intersect: -4361002249.364667
[2025-11-27 00:37:16] 2025-11-26 23:36:20,132 | INFO     | chi2: 16.024442802289144
[2025-11-27 00:37:16] 2025-11-26 23:36:20,134 | INFO     | sum of square deviations: 893492986529.897
[2025-11-27 00:37:16] 2025-11-26 23:36:20,165 | INFO     | time since job start (87707s) is within the limit (172800.0s)
[2025-11-27 00:37:16] 2025-11-26 23:36:20,224 | INFO     | sum of deviations: 2701907532641.5947
[2025-11-27 00:37:16] 2025-11-26 23:36:20,225 | INFO     | mean x: 1764156376.132818
[2025-11-27 00:37:16] 2025-11-26 23:36:20,225 | INFO     | mean y: 2861833.171468728
[2025-11-27 00:37:16] 2025-11-26 23:36:20,225 | INFO     | intersect: -5331916920.876945
[2025-11-27 00:37:16] 2025-11-26 23:36:20,227 | INFO     | chi2: 12.85738703195762
[2025-11-27 00:37:16] 2025-11-26 23:36:20,227 | INFO     | current chi2=12.85738703195762 (change=19.763905737047534 %)
[2025-11-27 00:37:16] 2025-11-26 23:36:20,227 | INFO     | right removable region: 1422
[2025-11-27 00:37:16] 2025-11-26 23:36:20,229 | INFO     | sum of square deviations: 893492003209.8976
[2025-11-27 00:37:16] 2025-11-26 23:36:20,305 | INFO     | sum of deviations: 1759218901804.9182
[2025-11-27 00:37:16] 2025-11-26 23:36:20,305 | INFO     | mean x: 1764156681.132818
[2025-11-27 00:37:16] 2025-11-26 23:36:20,305 | INFO     | mean y: 2861926.333801827
[2025-11-27 00:37:16] 2025-11-26 23:36:20,305 | INFO     | intersect: -3470630581.7633386
[2025-11-27 00:37:16] 2025-11-26 23:36:20,307 | INFO     | chi2: 13.098107136354251
[2025-11-27 00:37:16] 2025-11-26 23:36:20,307 | INFO     | current chi2=13.098107136354251 (change=18.26169996698329 %)
[2025-11-27 00:37:16] 2025-11-26 23:36:20,307 | INFO     | left removable region: 10
[2025-11-27 00:37:16] 2025-11-26 23:36:20,309 | INFO     | sum of square deviations: 872931791488.3457
[2025-11-27 00:37:16] 2025-11-26 23:36:20,390 | INFO     | sum of deviations: 2231654245837.91
[2025-11-27 00:37:16] 2025-11-26 23:36:20,391 | INFO     | mean x: 1764156650.6373937
[2025-11-27 00:37:16] 2025-11-26 23:36:20,391 | INFO     | mean y: 2872909.1189801698
[2025-11-27 00:37:16] 2025-11-26 23:36:20,395 | INFO     | intersect: -4507201896.388534
[2025-11-27 00:37:16] 2025-11-26 23:36:20,397 | INFO     | chi2: 9.0694315332458
[2025-11-27 00:37:16] 2025-11-26 23:36:20,397 | INFO     | current memory leak: 2.56 B/s (using 1412 data points, chi2=9.07)
[2025-11-27 00:37:16] 2025-11-26 23:36:20,402 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 00:37:16] 2025-11-26 23:36:20,402 | INFO     | ..............................
[2025-11-27 00:37:16] 2025-11-26 23:36:20,402 | INFO     | . Timing measurements:
[2025-11-27 00:37:16] 2025-11-26 23:36:20,403 | INFO     | . get job = 0 s
[2025-11-27 00:37:16] 2025-11-26 23:36:20,403 | INFO     | . initial setup = 10 s
[2025-11-27 00:37:16] 2025-11-26 23:36:20,403 | INFO     | . payload setup = 169 s
[2025-11-27 00:37:16] 2025-11-26 23:36:20,403 | INFO     | . stage-in = 0 s
[2025-11-27 00:37:16] 2025-11-26 23:36:20,403 | INFO     | . payload execution = 87232 s
[2025-11-27 00:37:16] 2025-11-26 23:36:20,403 | INFO     | . stage-out = 5 s
[2025-11-27 00:37:16] 2025-11-26 23:36:20,403 | INFO     | . log creation = 1 s
[2025-11-27 00:37:16] 2025-11-26 23:36:20,403 | INFO     | ..............................
[2025-11-27 00:37:16] 2025-11-26 23:36:20,573 | INFO     | 
[2025-11-27 00:37:16] 2025-11-26 23:36:20,573 | INFO     | job summary report
[2025-11-27 00:37:16] 2025-11-26 23:36:20,573 | INFO     | --------------------------------------------------
[2025-11-27 00:37:16] 2025-11-26 23:36:20,573 | INFO     | PanDA job id: 6895338715
[2025-11-27 00:37:16] 2025-11-26 23:36:20,573 | INFO     | task id: 47556137
[2025-11-27 00:37:16] 2025-11-26 23:36:20,573 | INFO     | errors: (none)
[2025-11-27 00:37:16] 2025-11-26 23:36:20,573 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:37:16] 2025-11-26 23:36:20,573 | INFO     | pilot state: finished 
[2025-11-27 00:37:16] 2025-11-26 23:36:20,573 | INFO     | transexitcode: 0
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | exeerrorcode: 0
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | exeerrordiag: 
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | exitcode: 0
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | exitmsg: OK
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | cpuconsumptiontime: 329477 s
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | nevents: 1000
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | neventsw: 0
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | pid: 6142
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | pgrp: 6142
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | corecount: 8
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | event service: False
[2025-11-27 00:37:16] 2025-11-26 23:36:20,574 | INFO     | sizes: {0: 2284032, 1: 2284287, 12: 2284287, 23: 2284315, 34: 2284343, 44: 2284371, 55: 2284527, 66: 2284555, 77: 2284583, 87: 2284639, 98: 2284667, 105: 2285237, 
[2025-11-27 00:37:16] 2025-11-26 23:36:20,575 | INFO     | --------------------------------------------------
[2025-11-27 00:37:16] 2025-11-26 23:36:20,575 | INFO     | 
[2025-11-27 00:37:16] 2025-11-26 23:36:20,575 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-27 00:37:16] 2025-11-26 23:36:21,031 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,031 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,031 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,031 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,031 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,031 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,031 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,031 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,032 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:37:16] 2025-11-26 23:36:21,033 | INFO     | job 6895338715 has completed (purged errors)
[2025-11-27 00:37:16] 2025-11-26 23:36:21,033 | INFO     | overall cleanup function is called
[2025-11-27 00:37:16] 2025-11-26 23:36:22,050 | INFO     | --- collectZombieJob: --- 10, [6142]
[2025-11-27 00:37:16] 2025-11-26 23:36:22,050 | INFO     | zombie collector waiting for pid 6142
[2025-11-27 00:37:16] 2025-11-26 23:36:22,050 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:37:16] 2025-11-26 23:36:22,050 | INFO     | collected zombie processes
[2025-11-27 00:37:16] 2025-11-26 23:36:22,051 | INFO     | will attempt to kill all subprocesses of pid=6142
[2025-11-27 00:37:16] 2025-11-26 23:36:22,169 | INFO     | process IDs to be killed: [6142] (in reverse order)
[2025-11-27 00:37:16] 2025-11-26 23:36:23,096 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:37:16] 2025-11-26 23:36:23,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:37:16] 2025-11-26 23:36:23,105 | INFO     | did not find any defunct processes belonging to 6142
[2025-11-27 00:37:16] 2025-11-26 23:36:23,108 | INFO     | did not find any defunct processes belonging to 6142
[2025-11-27 00:37:16] 2025-11-26 23:36:23,152 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:37:16] 2025-11-26 23:36:23,153 | INFO     | ready for new job
[2025-11-27 00:37:16] 2025-11-26 23:36:23,153 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:37:16] 2025-11-26 23:36:23,158 | INFO     | ***************************************
[2025-11-27 00:37:16] 2025-11-26 23:36:23,159 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:37:16] 2025-11-26 23:36:23,159 | INFO     | ***************************************
[2025-11-27 00:37:16] 2025-11-26 23:36:23,159 | INFO     | 
[2025-11-27 00:37:16] 2025-11-26 23:36:23,160 | INFO     | pilot is running in a VM
[2025-11-27 00:37:16] 2025-11-26 23:36:23,160 | INFO     | architecture information:
[2025-11-27 00:37:16] 2025-11-26 23:36:23,172 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:37:16] 2025-11-26 23:36:23,415 | INFO     | cat /etc/os-release:
[2025-11-27 00:37:16] NAME="CentOS Linux"
[2025-11-27 00:37:16] VERSION="7 (Core)"
[2025-11-27 00:37:16] ID="centos"
[2025-11-27 00:37:16] ID_LIKE="rhel fedora"
[2025-11-27 00:37:16] VERSION_ID="7"
[2025-11-27 00:37:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:37:16] ANSI_COLOR="0;31"
[2025-11-27 00:37:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:37:16] HOME_URL="https://www.centos.org/"
[2025-11-27 00:37:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:37:16] 
[2025-11-27 00:37:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:37:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:37:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:37:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:37:16] 
[2025-11-27 00:37:16] 2025-11-26 23:36:23,415 | INFO     | ***************************************
[2025-11-27 00:37:16] 2025-11-26 23:36:23,919 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-27 00:37:16] 2025-11-26 23:36:24,175 | INFO     | sufficient remaining disk space (495344156672 B)
[2025-11-27 00:37:16] 2025-11-26 23:36:24,175 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:37:16] 2025-11-26 23:36:24,175 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:37:16] 2025-11-26 23:36:24,176 | INFO     | update_server=False
[2025-11-27 00:37:16] 2025-11-26 23:36:24,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:37:16] 2025-11-26 23:36:24,359 | INFO     | all data control threads have been joined
[2025-11-27 00:37:16] 2025-11-26 23:36:24,381 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:37:16] 2025-11-26 23:36:24,398 | INFO     | all payload control threads have been joined
[2025-11-27 00:37:16] 2025-11-26 23:36:24,435 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:37:16] 2025-11-26 23:36:24,435 | INFO     | aborting loop
[2025-11-27 00:37:16] 2025-11-26 23:36:24,617 | INFO     | all job control threads have been joined
[2025-11-27 00:37:16] 2025-11-26 23:36:24,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:37:16] 2025-11-26 23:36:25,181 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:25,303 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:25,364 | INFO     | [data] control thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:25,404 | INFO     | [payload] control thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:25,441 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:25,587 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:37:16] 2025-11-26 23:36:25,601 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:25,622 | INFO     | [job] control thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:25,723 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:25,845 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:25,918 | INFO     | [job] validate thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:26,236 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:26,290 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:26,388 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:26,451 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:26,593 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:28,698 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:37:16] 2025-11-26 23:36:53,384 | INFO     | PID=31991 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 00:37:16] 2025-11-26 23:36:53,384 | INFO     | .. there are 9 such processes running
[2025-11-27 00:37:16] 2025-11-26 23:36:53,385 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:37:16] 2025-11-26 23:36:53,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:37:16] 2025-11-26 23:36:53,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:37:16] 2025-11-26 23:37:06,518 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:37:16] 2025-11-26 23:37:06,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140129345812288)>', '<ExcThread(monitor, started 140129037428480)>']
[2025-11-27 00:37:16] 2025-11-26 23:37:07,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:37:16] 2025-11-26 23:37:07,468 | INFO     | [monitor] control thread has ended
[2025-11-27 00:37:16] 2025-11-26 23:37:11,786 | INFO     | all workflow threads have been joined
[2025-11-27 00:37:16] 2025-11-26 23:37:11,786 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:37:16] 2025-11-26 23:37:11,787 | INFO     | traces error code: 0
[2025-11-27 00:37:16] 2025-11-26 23:37:11,787 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:37:16] 2025-11-26 23:37:12,216 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:37:16] 2025-11-26 23:37:12,343 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:37:16] 2025-11-26 23:37:12,496 [wrapper] pilotpid: 31991
[2025-11-27 00:37:16] 2025-11-26 23:37:12,580 [wrapper] Pilot exit status: 0
[2025-11-27 00:37:16] 2025-11-26 23:37:12,928 [wrapper] pandaids: 6895338715
[2025-11-27 00:37:16] 2025-11-26 23:37:13,687 [wrapper] cleanup supervisor_pilot 26045 31992
[2025-11-27 00:37:16] 2025-11-26 23:37:13,759 [wrapper] Test setup, not cleaning
[2025-11-27 00:37:16] 2025-11-26 23:37:13,803 [wrapper] apfmon messages muted
[2025-11-27 00:37:16] 2025-11-26 23:37:13,860 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:37:16] 2025-11-26 23:37:13,941 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:37:16]  *** Error codes and diagnostics ***
[2025-11-27 00:37:16]     "exeErrorCode": 0,
[2025-11-27 00:37:16]     "exeErrorDiag": "",
[2025-11-27 00:37:16]     "pilotErrorCode": 0,
[2025-11-27 00:37:16]     "pilotErrorDiag": "",
[2025-11-27 00:37:16]  *** Listing of results directory ***
[2025-11-27 00:37:16] total 1330088
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc    576529 Nov 22 10:55 pilot3.tar.gz
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc      5112 Nov 22 10:57 queuedata.json
[2025-11-27 00:37:16] -rwx------. 1 boinc boinc     36292 Nov 22 10:57 runpilot2-wrapper.sh
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc       100 Nov 26 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:37:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 00:10 run_atlas
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc       105 Nov 26 00:10 job.xml
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc      6391 Nov 26 00:10 init_data.xml
[2025-11-27 00:37:16] -rw-r--r--. 2 boinc boinc 407236038 Nov 26 00:10 EVNT.47483658._000339.pool.root.1
[2025-11-27 00:37:16] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 00:37:16] drwxrwx--x. 2 boinc boinc        68 Nov 26 00:10 shared
[2025-11-27 00:37:16] -rw-r--r--. 2 boinc boinc    590102 Nov 26 00:10 input.tar.gz
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc         0 Nov 26 00:10 boinc_lockfile
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc      2782 Nov 26 00:10 pandaJob.out
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc    991877 Nov 26 00:14 agis_schedconf.cvmfs.json
[2025-11-27 00:37:16] drwx------. 5 boinc boinc      4096 Nov 26 00:14 pilot3
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc       533 Nov 27 00:11 boinc_task_state.xml
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc 922585511 Nov 27 00:33 HITS.47556137._003351.pool.root.1
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc      1031 Nov 27 00:34 memory_monitor_summary.json
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc   1516240 Nov 27 00:34 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc   2501945 Nov 27 00:34 log.47556137._003351.job.log.tgz.1
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc      7940 Nov 27 00:36 heartbeat.json
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc        95 Nov 27 00:36 pilot_heartbeat.json
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc      8192 Nov 27 00:37 boinc_mmap_file
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc        29 Nov 27 00:37 wrapper_checkpoint.txt
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc      4885 Nov 27 00:37 pilotlog.txt
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc  11645128 Nov 27 00:37 log.47556137._003351.job.log.1
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc       353 Nov 27 00:37 output.list
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc       620 Nov 27 00:37 runtime_log
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc  14161920 Nov 27 00:37 result.tar.gz
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc      8833 Nov 27 00:37 runtime_log.err
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc       662 Nov 27 00:37 nqqLDmUYzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmO6JKDm6ISExm.diag
[2025-11-27 00:37:16] -rw-r--r--. 1 boinc boinc     21433 Nov 27 00:37 stderr.txt
[2025-11-27 00:37:16] HITS file was successfully produced:
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc 922585511 Nov 27 00:33 shared/HITS.pool.root.1
[2025-11-27 00:37:16]  *** Contents of shared directory: ***
[2025-11-27 00:37:16] total 1313084
[2025-11-27 00:37:16] -rw-r--r--. 2 boinc boinc 407236038 Nov 26 00:10 ATLAS.root_0
[2025-11-27 00:37:16] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 00:37:16] -rw-r--r--. 2 boinc boinc    590102 Nov 26 00:10 input.tar.gz
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc 922585511 Nov 27 00:33 HITS.pool.root.1
[2025-11-27 00:37:16] -rw-------. 1 boinc boinc  14161920 Nov 27 00:37 result.tar.gz
00:37:18 (28175): run_atlas exited; CPU time 330125.302183
00:37:18 (28175): called boinc_finish(0)

</stderr_txt>
]]>

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