Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:01:53 (2082): wrapper (7.7.26015): starting
23:01:54 (2082): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:01:54] Arguments: --nthreads 8
[2025-11-25 23:01:54] Threads: 8
[2025-11-25 23:01:54] Checking for CVMFS
[2025-11-25 23:01:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:01:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:01:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:01:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:01:56] 2.11.2.0 3881 221719 141112 153298 2 85 23450759 25165825 4632 130560 12 116864933 99.920 40372732 2659 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 23:01:56] CVMFS is ok
[2025-11-25 23:01:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:01:56] Checking for apptainer binary...
[2025-11-25 23:01:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:01:56] Running /usr/bin/apptainer --version
[2025-11-25 23:01:56] apptainer version 1.3.2-1.el7
[2025-11-25 23:01:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:02:08] cg-vwn428.simple-grid.lan
[2025-11-25 23:02:08] apptainer works
[2025-11-25 23:02:09] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:02:09] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:02:09] Starting ATLAS job with PandaID=6895338708
[2025-11-25 23:02:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:44:44]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:44:44] 2025-11-26 21:43:29,928 | INFO     | monitor loop #5723: job 0:6895338708 is in state 'finished'
[2025-11-26 22:44:44] 2025-11-26 21:43:29,928 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:44:44] 2025-11-26 21:43:30,962 | INFO     | time since job start (85044s) is within the limit (172800.0s)
[2025-11-26 22:44:44] 2025-11-26 21:43:32,450 | INFO     | monitor loop #5724: job 0:6895338708 is in state 'finished'
[2025-11-26 22:44:44] 2025-11-26 21:43:32,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:44:44] 2025-11-26 21:43:32,973 | INFO     | time since job start (85046s) is within the limit (172800.0s)
[2025-11-26 22:44:44] 2025-11-26 21:43:34,954 | INFO     | monitor loop #5725: job 0:6895338708 is in state 'finished'
[2025-11-26 22:44:44] 2025-11-26 21:43:34,954 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:44:44] 2025-11-26 21:43:34,991 | INFO     | time since job start (85048s) is within the limit (172800.0s)
[2025-11-26 22:44:44] 2025-11-26 21:43:37,003 | INFO     | time since job start (85051s) is within the limit (172800.0s)
[2025-11-26 22:44:44] 2025-11-26 21:43:37,465 | INFO     | monitor loop #5726: job 0:6895338708 is in state 'finished'
[2025-11-26 22:44:44] 2025-11-26 21:43:37,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:44:44] 2025-11-26 21:43:39,014 | INFO     | time since job start (85053s) is within the limit (172800.0s)
[2025-11-26 22:44:44] 2025-11-26 21:43:39,970 | INFO     | monitor loop #5727: job 0:6895338708 is in state 'finished'
[2025-11-26 22:44:44] 2025-11-26 21:43:39,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:44:44] 2025-11-26 21:43:41,023 | INFO     | time since job start (85055s) is within the limit (172800.0s)
[2025-11-26 22:44:44] 2025-11-26 21:43:41,514 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 22:44:44] 2025-11-26 21:43:41,515 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 22:44:44] 2025-11-26 21:43:41,517 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895338708/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:44:44] 2025-11-26 21:43:41,518 | INFO     | extracted standard info from prmon json
[2025-11-26 22:44:44] 2025-11-26 21:43:41,518 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:44:44] 2025-11-26 21:43:41,518 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:44:44] 2025-11-26 21:43:41,544 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:44:44] 2025-11-26 21:43:41,547 | INFO     | sum of square deviations: 822024732373.5034
[2025-11-26 22:44:44] 2025-11-26 21:43:41,615 | INFO     | sum of deviations: 3261695453458.7715
[2025-11-26 22:44:44] 2025-11-26 21:43:41,615 | INFO     | mean x: 1764151085.615607
[2025-11-26 22:44:44] 2025-11-26 21:43:41,615 | INFO     | mean y: 2834431.723265896
[2025-11-26 22:44:44] 2025-11-26 21:43:41,615 | INFO     | intersect: -6997105288.523837
[2025-11-26 22:44:44] 2025-11-26 21:43:41,617 | INFO     | chi2: 22.76585297458745
[2025-11-26 22:44:44] 2025-11-26 21:43:41,619 | INFO     | sum of square deviations: 813148088007.2579
[2025-11-26 22:44:44] 2025-11-26 21:43:41,679 | INFO     | sum of deviations: 3724833612573.7183
[2025-11-26 22:44:44] 2025-11-26 21:43:41,679 | INFO     | mean x: 1764150933.119652
[2025-11-26 22:44:44] 2025-11-26 21:43:41,679 | INFO     | mean y: 2842387.7411167515
[2025-11-26 22:44:44] 2025-11-26 21:43:41,680 | INFO     | intersect: -8078303949.872502
[2025-11-26 22:44:44] 2025-11-26 21:43:41,681 | INFO     | chi2: 19.488558711892892
[2025-11-26 22:44:44] 2025-11-26 21:43:41,681 | INFO     | current chi2=19.488558711892892 (change=14.39565768237571 %)
[2025-11-26 22:44:44] 2025-11-26 21:43:41,681 | INFO     | right removable region: 1378
[2025-11-26 22:44:44] 2025-11-26 21:43:41,683 | INFO     | sum of square deviations: 813147146167.2577
[2025-11-26 22:44:44] 2025-11-26 21:43:41,743 | INFO     | sum of deviations: 2675161639147.2886
[2025-11-26 22:44:44] 2025-11-26 21:43:41,744 | INFO     | mean x: 1764151238.119652
[2025-11-26 22:44:44] 2025-11-26 21:43:41,744 | INFO     | mean y: 2844507.107324148
[2025-11-26 22:44:44] 2025-11-26 21:43:41,744 | INFO     | intersect: -5801012445.61836
[2025-11-26 22:44:44] 2025-11-26 21:43:41,746 | INFO     | chi2: 17.920242236163094
[2025-11-26 22:44:44] 2025-11-26 21:43:41,746 | INFO     | current chi2=17.920242236163094 (change=21.284556057852537 %)
[2025-11-26 22:44:44] 2025-11-26 21:43:41,746 | INFO     | left removable region: 10
[2025-11-26 22:44:44] 2025-11-26 21:43:41,748 | INFO     | sum of square deviations: 793843034669.3564
[2025-11-26 22:44:44] 2025-11-26 21:43:41,801 | INFO     | sum of deviations: 2730748469201.564
[2025-11-26 22:44:44] 2025-11-26 21:43:41,802 | INFO     | mean x: 1764151207.628655
[2025-11-26 22:44:44] 2025-11-26 21:43:41,802 | INFO     | mean y: 2863406.812134503
[2025-11-26 22:44:44] 2025-11-26 21:43:41,802 | INFO     | intersect: -6065657697.839942
[2025-11-26 22:44:44] 2025-11-26 21:43:41,804 | INFO     | chi2: 10.079397992391472
[2025-11-26 22:44:44] 2025-11-26 21:43:41,804 | INFO     | current memory leak: 3.44 B/s (using 1368 data points, chi2=10.08)
[2025-11-26 22:44:44] 2025-11-26 21:43:41,805 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-26 22:44:44] 2025-11-26 21:43:41,805 | INFO     | ..............................
[2025-11-26 22:44:44] 2025-11-26 21:43:41,805 | INFO     | . Timing measurements:
[2025-11-26 22:44:44] 2025-11-26 21:43:41,805 | INFO     | . get job = 0 s
[2025-11-26 22:44:44] 2025-11-26 21:43:41,805 | INFO     | . initial setup = 19 s
[2025-11-26 22:44:44] 2025-11-26 21:43:41,805 | INFO     | . payload setup = 174 s
[2025-11-26 22:44:44] 2025-11-26 21:43:41,805 | INFO     | . stage-in = 0 s
[2025-11-26 22:44:44] 2025-11-26 21:43:41,805 | INFO     | . payload execution = 84580 s
[2025-11-26 22:44:44] 2025-11-26 21:43:41,806 | INFO     | . stage-out = 5 s
[2025-11-26 22:44:44] 2025-11-26 21:43:41,806 | INFO     | . log creation = 2 s
[2025-11-26 22:44:44] 2025-11-26 21:43:41,806 | INFO     | ..............................
[2025-11-26 22:44:44] 2025-11-26 21:43:41,933 | INFO     | 
[2025-11-26 22:44:44] 2025-11-26 21:43:41,933 | INFO     | job summary report
[2025-11-26 22:44:44] 2025-11-26 21:43:41,933 | INFO     | --------------------------------------------------
[2025-11-26 22:44:44] 2025-11-26 21:43:41,933 | INFO     | PanDA job id: 6895338708
[2025-11-26 22:44:44] 2025-11-26 21:43:41,933 | INFO     | task id: 47556137
[2025-11-26 22:44:44] 2025-11-26 21:43:41,934 | INFO     | errors: (none)
[2025-11-26 22:44:44] 2025-11-26 21:43:41,934 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:44:44] 2025-11-26 21:43:41,934 | INFO     | pilot state: finished 
[2025-11-26 22:44:44] 2025-11-26 21:43:41,934 | INFO     | transexitcode: 0
[2025-11-26 22:44:44] 2025-11-26 21:43:41,934 | INFO     | exeerrorcode: 0
[2025-11-26 22:44:44] 2025-11-26 21:43:41,934 | INFO     | exeerrordiag: 
[2025-11-26 22:44:44] 2025-11-26 21:43:41,934 | INFO     | exitcode: 0
[2025-11-26 22:44:44] 2025-11-26 21:43:41,934 | INFO     | exitmsg: OK
[2025-11-26 22:44:44] 2025-11-26 21:43:41,934 | INFO     | cpuconsumptiontime: 317935 s
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | nevents: 1000
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | neventsw: 0
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | pid: 12472
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | pgrp: 12472
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | corecount: 8
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | event service: False
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | sizes: {0: 2284036, 1: 2284291, 12: 2284291, 23: 2284319, 34: 2284347, 45: 2284375, 55: 2284531, 66: 2284559, 77: 2284587, 88: 2284643, 97: 2284933, 98: 2285241, 8
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | --------------------------------------------------
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | 
[2025-11-26 22:44:44] 2025-11-26 21:43:41,935 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-26 22:44:44] 2025-11-26 21:43:42,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,314 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,314 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,314 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,315 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,315 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,315 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,315 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,315 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,315 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,315 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,315 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,316 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,316 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,316 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:44:44] 2025-11-26 21:43:42,316 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,316 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:44:44] 2025-11-26 21:43:42,316 | INFO     | job 6895338708 has completed (purged errors)
[2025-11-26 22:44:44] 2025-11-26 21:43:42,316 | INFO     | overall cleanup function is called
[2025-11-26 22:44:44] 2025-11-26 21:43:43,340 | INFO     | --- collectZombieJob: --- 10, [12472]
[2025-11-26 22:44:44] 2025-11-26 21:43:43,340 | INFO     | zombie collector waiting for pid 12472
[2025-11-26 22:44:44] 2025-11-26 21:43:43,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:44:44] 2025-11-26 21:43:43,340 | INFO     | collected zombie processes
[2025-11-26 22:44:44] 2025-11-26 21:43:43,340 | INFO     | will attempt to kill all subprocesses of pid=12472
[2025-11-26 22:44:44] 2025-11-26 21:43:43,456 | INFO     | process IDs to be killed: [12472] (in reverse order)
[2025-11-26 22:44:44] 2025-11-26 21:43:44,325 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:44:44] 2025-11-26 21:43:44,326 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:44:44] 2025-11-26 21:43:44,329 | INFO     | did not find any defunct processes belonging to 12472
[2025-11-26 22:44:44] 2025-11-26 21:43:44,332 | INFO     | did not find any defunct processes belonging to 12472
[2025-11-26 22:44:44] 2025-11-26 21:43:44,401 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:44:44] 2025-11-26 21:43:44,401 | INFO     | ready for new job
[2025-11-26 22:44:44] 2025-11-26 21:43:44,402 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:44:44] 2025-11-26 21:43:44,407 | INFO     | ***************************************
[2025-11-26 22:44:44] 2025-11-26 21:43:44,407 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:44:44] 2025-11-26 21:43:44,407 | INFO     | ***************************************
[2025-11-26 22:44:44] 2025-11-26 21:43:44,407 | INFO     | 
[2025-11-26 22:44:44] 2025-11-26 21:43:44,408 | INFO     | pilot is running in a VM
[2025-11-26 22:44:44] 2025-11-26 21:43:44,408 | INFO     | architecture information:
[2025-11-26 22:44:44] 2025-11-26 21:43:44,424 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:44:44] 2025-11-26 21:43:44,732 | INFO     | cat /etc/os-release:
[2025-11-26 22:44:44] NAME="CentOS Linux"
[2025-11-26 22:44:44] VERSION="7 (Core)"
[2025-11-26 22:44:44] ID="centos"
[2025-11-26 22:44:44] ID_LIKE="rhel fedora"
[2025-11-26 22:44:44] VERSION_ID="7"
[2025-11-26 22:44:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:44:44] ANSI_COLOR="0;31"
[2025-11-26 22:44:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:44:44] HOME_URL="https://www.centos.org/"
[2025-11-26 22:44:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:44:44] 
[2025-11-26 22:44:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:44:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:44:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:44:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:44:44] 
[2025-11-26 22:44:44] 2025-11-26 21:43:44,732 | INFO     | ***************************************
[2025-11-26 22:44:44] 2025-11-26 21:43:45,236 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-26 22:44:44] 2025-11-26 21:43:45,488 | INFO     | sufficient remaining disk space (495259222016 B)
[2025-11-26 22:44:44] 2025-11-26 21:43:45,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:44:44] 2025-11-26 21:43:45,488 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:44:44] 2025-11-26 21:43:45,488 | INFO     | update_server=False
[2025-11-26 22:44:44] 2025-11-26 21:43:45,488 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:44:44] 2025-11-26 21:43:45,516 | INFO     | all data control threads have been joined
[2025-11-26 22:44:44] 2025-11-26 21:43:45,859 | INFO     | all payload control threads have been joined
[2025-11-26 22:44:44] 2025-11-26 21:43:45,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:44:44] 2025-11-26 21:43:45,994 | INFO     | aborting loop
[2025-11-26 22:44:44] 2025-11-26 21:43:46,084 | INFO     | all job control threads have been joined
[2025-11-26 22:44:44] 2025-11-26 21:43:46,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:44:44] 2025-11-26 21:43:46,495 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:46,525 | INFO     | [data] control thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:46,532 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:46,573 | INFO     | [job] validate thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:46,795 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:46,865 | INFO     | [payload] control thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:46,949 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:44:44] 2025-11-26 21:43:47,000 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:47,089 | INFO     | [job] control thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:47,149 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:47,525 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:47,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:47,863 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:47,955 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:47,962 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:48,450 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:43:48,960 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:44:44] 2025-11-26 21:43:52,969 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:44:44] 2025-11-26 21:44:14,198 | INFO     | PID=5894 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 22:44:44] 2025-11-26 21:44:14,199 | INFO     | .. there are 9 such processes running
[2025-11-26 22:44:44] 2025-11-26 21:44:14,200 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:44:44] 2025-11-26 21:44:14,200 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:44:44] 2025-11-26 21:44:14,200 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:44:44] 2025-11-26 21:44:34,615 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:44:44] 2025-11-26 21:44:35,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665483794240)>', '<ExcThread(monitor, started 140665027532544)>']
[2025-11-26 22:44:44] 2025-11-26 21:44:35,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:44:44] 2025-11-26 21:44:35,324 | INFO     | [monitor] control thread has ended
[2025-11-26 22:44:44] 2025-11-26 21:44:40,255 | INFO     | all workflow threads have been joined
[2025-11-26 22:44:44] 2025-11-26 21:44:40,255 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:44:44] 2025-11-26 21:44:40,255 | INFO     | traces error code: 0
[2025-11-26 22:44:44] 2025-11-26 21:44:40,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:44:44] 2025-11-26 21:44:40,544 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:44:44] 2025-11-26 21:44:40,643 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:44:44] 2025-11-26 21:44:40,695 [wrapper] pilotpid: 5894
[2025-11-26 22:44:44] 2025-11-26 21:44:40,757 [wrapper] Pilot exit status: 0
[2025-11-26 22:44:44] 2025-11-26 21:44:40,987 [wrapper] pandaids: 6895338708
[2025-11-26 22:44:44] 2025-11-26 21:44:42,047 [wrapper] cleanup supervisor_pilot 10275 5895
[2025-11-26 22:44:44] 2025-11-26 21:44:42,126 [wrapper] Test setup, not cleaning
[2025-11-26 22:44:44] 2025-11-26 21:44:42,159 [wrapper] apfmon messages muted
[2025-11-26 22:44:44] 2025-11-26 21:44:42,193 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:44:44] 2025-11-26 21:44:42,296 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:44:44]  *** Error codes and diagnostics ***
[2025-11-26 22:44:44]     "exeErrorCode": 0,
[2025-11-26 22:44:44]     "exeErrorDiag": "",
[2025-11-26 22:44:44]     "pilotErrorCode": 0,
[2025-11-26 22:44:44]     "pilotErrorDiag": "",
[2025-11-26 22:44:44]  *** Listing of results directory ***
[2025-11-26 22:44:44] total 1327256
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc    576529 Nov 22 10:55 pilot3.tar.gz
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc      5112 Nov 22 10:57 queuedata.json
[2025-11-26 22:44:44] -rwx------. 1 boinc boinc     36292 Nov 22 10:57 runpilot2-wrapper.sh
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc       100 Nov 25 23:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:44:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 23:01 run_atlas
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc       105 Nov 25 23:01 job.xml
[2025-11-26 22:44:44] -rw-r--r--. 2 boinc boinc 410005264 Nov 25 23:01 EVNT.47483658._000338.pool.root.1
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc      6392 Nov 25 23:01 init_data.xml
[2025-11-26 22:44:44] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:01 start_atlas.sh
[2025-11-26 22:44:44] drwxrwx--x. 2 boinc boinc        68 Nov 25 23:01 shared
[2025-11-26 22:44:44] -rw-r--r--. 2 boinc boinc    590100 Nov 25 23:01 input.tar.gz
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc         0 Nov 25 23:01 boinc_lockfile
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc      2784 Nov 25 23:02 pandaJob.out
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc    991893 Nov 25 23:05 agis_schedconf.cvmfs.json
[2025-11-26 22:44:44] drwx------. 5 boinc boinc      4096 Nov 25 23:06 pilot3
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc       533 Nov 26 22:21 boinc_task_state.xml
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc 917614262 Nov 26 22:40 HITS.47556137._003344.pool.root.1
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc      1031 Nov 26 22:41 memory_monitor_summary.json
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc   1516240 Nov 26 22:42 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc   2471854 Nov 26 22:42 log.47556137._003344.job.log.tgz.1
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc      8625 Nov 26 22:43 heartbeat.json
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc        95 Nov 26 22:44 pilot_heartbeat.json
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc        29 Nov 26 22:44 wrapper_checkpoint.txt
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc      8192 Nov 26 22:44 boinc_mmap_file
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc      4883 Nov 26 22:44 pilotlog.txt
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc  11319387 Nov 26 22:44 log.47556137._003344.job.log.1
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc       353 Nov 26 22:44 output.list
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc       620 Nov 26 22:44 runtime_log
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc  13813760 Nov 26 22:44 result.tar.gz
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc      8817 Nov 26 22:44 runtime_log.err
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc       662 Nov 26 22:44 chhLDmUYzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmH6JKDmFv3kLm.diag
[2025-11-26 22:44:44] -rw-r--r--. 1 boinc boinc     21435 Nov 26 22:44 stderr.txt
[2025-11-26 22:44:44] HITS file was successfully produced:
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc 917614262 Nov 26 22:40 shared/HITS.pool.root.1
[2025-11-26 22:44:44]  *** Contents of shared directory: ***
[2025-11-26 22:44:44] total 1310592
[2025-11-26 22:44:44] -rw-r--r--. 2 boinc boinc 410005264 Nov 25 23:01 ATLAS.root_0
[2025-11-26 22:44:44] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:01 start_atlas.sh
[2025-11-26 22:44:44] -rw-r--r--. 2 boinc boinc    590100 Nov 25 23:01 input.tar.gz
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc 917614262 Nov 26 22:40 HITS.pool.root.1
[2025-11-26 22:44:44] -rw-------. 1 boinc boinc  13813760 Nov 26 22:44 result.tar.gz
22:44:45 (2082): run_atlas exited; CPU time 318469.008108
22:44:45 (2082): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN